Cp4.1LG14g01280 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g01280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal protein L23
LocationCp4.1LG14 : 3854483 .. 3855131 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGTGAAGAAACGTATCCCAGTTACTTCTTAATTGTGATCTGTTTTGGATTTTCTTCTTCTTCTAAACGATAATAGTGTAATAGGTTGATGAGCTTAATGATAAATGTTTGATTTTCTAATTATGAAATGAACTTGTTGGCCCTCTTATGGGTTGTTTTGCAGGAGGAAGTTCTGTTCTGTTGCTTGA

mRNA sequence

ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGAGGAAGTTCTGTTCTGTTGCTTGA

Coding sequence (CDS)

ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGAGGAAGTTCTGTTCTGTTGCTTGA

Protein sequence

MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKSYKGFANRGRRQTGSAETIEPSTKFPWSSMRSGRRKFCSVA
Homology
[Close]
BLAST of Cp4.1LG14g01280 vs. Swiss-Prot
Match: RL23_METCA (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1 

Query: 10 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 69
          +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]
BLAST of Cp4.1LG14g01280 vs. Swiss-Prot
Match: RL23_AERHH (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 11 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 70
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]
BLAST of Cp4.1LG14g01280 vs. Swiss-Prot
Match: RL23_HAES1 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 6  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDY 65
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 66 KKAYVTLRNPLSI 75
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]
BLAST of Cp4.1LG14g01280 vs. Swiss-Prot
Match: RL23_AERS4 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 11 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 70
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]
BLAST of Cp4.1LG14g01280 vs. Swiss-Prot
Match: RL23_ALKEH (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 10 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL 69
          E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]
BLAST of Cp4.1LG14g01280 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.0e-71
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSK SIVEEGEAK+HWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQT-GSAETIEPSTKFPWSSMRSGR 154
           YKGFA+RGRR++ G AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]
BLAST of Cp4.1LG14g01280 vs. TrEMBL
Match: A5BVA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.7e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 330 MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 389

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 390 YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 449

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 450 EKSSAERGRGGRGGAAA--AAAKFPWSGMRASR 480

[Close]
BLAST of Cp4.1LG14g01280 vs. TrEMBL
Match: D7T5V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.9e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 21  MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 81  YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 141 EKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

[Close]
BLAST of Cp4.1LG14g01280 vs. TrEMBL
Match: A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.9e-52
Identity = 110/154 (71.43%), Postives = 125/154 (81.17%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGG+L+AKPD
Sbjct: 21  MPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGILLAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLS+SPD+YP+RIIEE+K  MNKQ + SIVE+GE K+HWL  K+     S
Sbjct: 81  YKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIVEDGEGKKHWLDGKKEERVGS 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGRR 155
            KG   R R + G  +    + KFPWSSMRS  R
Sbjct: 141 EKG---RRRDRGGVGDFTVENAKFPWSSMRSASR 171

[Close]
BLAST of Cp4.1LG14g01280 vs. TrEMBL
Match: A0A059AL68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-51
Identity = 109/153 (71.24%), Postives = 125/153 (81.70%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLR+PLS+SPD++PIR++EED+R+ NK+   S+VEEGE KRHWL  +E    K 
Sbjct: 81  YKKAYVTLRSPLSVSPDLFPIRVVEEDRRSANKKGGSSMVEEGERKRHWLDGEERERRKR 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K F  R R  +G+        KFPWS M+SGR
Sbjct: 141 EKEFGERVRGGSGA--------KFPWSFMKSGR 165

[Close]
BLAST of Cp4.1LG14g01280 vs. TAIR10
Match: AT4G39880.1 (AT4G39880.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-43
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNMDGKKKKRGGLLIAK D
Sbjct: 21  MPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKRGGLLIAKAD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLR+PLSIS D++P++ IEED+++  K S F + EE + K HWL  KE  E   
Sbjct: 81  YKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGSSF-VEEEDDKKSHWLDRKEKREIGG 140

Query: 121 Y-KGFANRGRRQTGS----AETIEPSTKFPWSSMR 151
           Y KG   RG  +  S          + KFPWS+MR
Sbjct: 141 YGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

[Close]
BLAST of Cp4.1LG14g01280 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 2.8e-71
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSK SIVEEGEAK+HWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQT-GSAETIEPSTKFPWSSMRSGR 154
           YKGFA+RGRR++ G AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]
BLAST of Cp4.1LG14g01280 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-70
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQT-GSAETIEPSTKFPWSSMRSGR 154
           YKGFA+RGRR+  G AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]
BLAST of Cp4.1LG14g01280 vs. NCBI nr
Match: gi|1009145987|ref|XP_015890638.1| (PREDICTED: uncharacterized protein LOC107425195 [Ziziphus jujuba])

HSP 1 Score: 224.6 bits (571), Expect = 1.3e-55
Identity = 119/153 (77.78%), Postives = 123/153 (80.39%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP SFTNITEIALKTIPSASKIEIKRVLESLYGFEV+KVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPNSFTNITEIALKTIPSASKIEIKRVLESLYGFEVEKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTL+NPLSISPD+YPIRIIEEDKR MNKQ K S+VEEGE KRHWL  KE   FK 
Sbjct: 81  YKKAYVTLKNPLSISPDLYPIRIIEEDKRQMNKQPKSSMVEEGEVKRHWLDGKESQRFKP 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            KG  NR           E   KFPWSSMR  R
Sbjct: 141 EKGSGNRA----------ESGAKFPWSSMRPAR 163

[Close]
BLAST of Cp4.1LG14g01280 vs. NCBI nr
Match: gi|147784232|emb|CAN63891.1| (hypothetical protein VITISV_012657 [Vitis vinifera])

HSP 1 Score: 219.2 bits (557), Expect = 5.3e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 330 MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 389

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 390 YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 449

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 450 EKSSAERGRGGRGGAAA--AAAKFPWSGMRASR 480

[Close]
BLAST of Cp4.1LG14g01280 vs. NCBI nr
Match: gi|731438556|ref|XP_010647317.1| (PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera])

HSP 1 Score: 218.8 bits (556), Expect = 7.0e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 21  MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 81  YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 141 EKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g01280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL23_METCA1.1e-0641.6750S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB... [more]
RL23_AERHH1.9e-0645.7650S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC... [more]
RL23_HAES11.9e-0642.4750S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1[more]
RL23_AERS42.4e-0645.7650S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV... [more]
RL23_ALKEH2.4e-0645.7650S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D... [more]
BLAST of Cp4.1LG14g01280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0J2_CUCSA2.0e-7190.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1[more]
A5BVA7_VITVI3.7e-5473.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1[more]
D7T5V5_VITVI4.9e-5473.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=... [more]
A0A067LED8_JATCU5.9e-5271.43Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1[more]
A0A059AL68_EUCGR2.9e-5171.24Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1[more]
BLAST of Cp4.1LG14g01280 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39880.11.2e-4361.94 Ribosomal protein L23/L15e family protein[more]
BLAST of Cp4.1LG14g01280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438835|ref|XP_004137193.1|2.8e-7190.26PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus][more]
gi|659111130|ref|XP_008455593.1|1.4e-7090.26PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo][more]
gi|1009145987|ref|XP_015890638.1|1.3e-5577.78PREDICTED: uncharacterized protein LOC107425195 [Ziziphus jujuba][more]
gi|147784232|emb|CAN63891.1|5.3e-5473.86hypothetical protein VITISV_012657 [Vitis vinifera][more]
gi|731438556|ref|XP_010647317.1|7.0e-5473.86PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR013025Ribosomal_L25/23
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR012677Nucleotide-bd_a/b_plait_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0015992 proton transport
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0034654 nucleobase-containing compound biosynthetic process
biological_process GO:0044699 single-organism process
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005351 sugar:proton symporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g01280.1Cp4.1LG14g01280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 11..74
score: 2.8
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 11..74
score: 2.05
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 10..70
score: 1.8
NoneNo IPR availablePANTHERPTHR12059RIBOSOMAL PROTEIN L23-RELATEDcoord: 1..155
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g01280Cucsa.273070Cucumber (Gy14) v1cgycpeB0716
Cp4.1LG14g01280CmaCh04G008240Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g01280CmoCh04G008810Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g01280CmoCh16G007660Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g01280Cla004827Watermelon (97103) v1cpewmB206
Cp4.1LG14g01280Csa4G095560Cucumber (Chinese Long) v2cpecuB220
Cp4.1LG14g01280ClCG10G009000Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g01280CSPI04G08650Wild cucumber (PI 183967)cpecpiB222
Cp4.1LG14g01280CsaV3_4G008860Cucumber (Chinese Long) v3cpecucB0264
Cp4.1LG14g01280Bhi11G000833Wax gourdcpewgoB0281
Cp4.1LG14g01280CsGy4G008480Cucumber (Gy14) v2cgybcpeB486
Cp4.1LG14g01280Carg05824Silver-seed gourdcarcpeB1414
Cp4.1LG14g01280Carg14224Silver-seed gourdcarcpeB1301
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g01280Cp4.1LG01g09280Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g01280Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG14g01280Cucumber (Gy14) v1cgycpeB0216
Cp4.1LG14g01280Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g01280Wild cucumber (PI 183967)cpecpiB232
Cp4.1LG14g01280Bottle gourd (USVL1VR-Ls)cpelsiB164
Cp4.1LG14g01280Bottle gourd (USVL1VR-Ls)cpelsiB170
Cp4.1LG14g01280Watermelon (Charleston Gray)cpewcgB204
Cp4.1LG14g01280Watermelon (97103) v1cpewmB232
Cp4.1LG14g01280Melon (DHL92) v3.5.1cpemeB199
Cp4.1LG14g01280Melon (DHL92) v3.5.1cpemeB205
Cp4.1LG14g01280Melon (DHL92) v3.5.1cpemeB209
Cp4.1LG14g01280Melon (DHL92) v3.6.1cpemedB251
Cp4.1LG14g01280Silver-seed gourdcarcpeB0557
Cp4.1LG14g01280Cucumber (Chinese Long) v3cpecucB0284
Cp4.1LG14g01280Wax gourdcpewgoB0305