CsGy4G008480 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G008480
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein L23
Location	Chr4 : 6480243 .. 6483036 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATCTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGGTAGTGTGAAGAAACGTATCCAGTTACTTCCTAATTGTCATATTTTGGATTTTGTTATCCTCAAAATGATAACAGTGCAATAGGTTGGTGATGGCTTTGAGCTTACTGATAGATGTTTTATTTTTTAACTATGAAATGAACTTCTTGGCCCTCTTATGGGATGTTTTGCTGGAGGAAGTTCTGTTTTGTTGCTTGAATCAATAAATAAATTAGAGTTGCATTTGTATTATTCCCCTCGTATTATGTGAATTTACTTAGATCATTTCAGTATGTGGTGTAGGTTCACTATCAAATATTCAATGGCAATATTGTGGTTATAGTGAATTTTCACATGCAACCACATGCACTATGAAAAACTTAATGCATAGAGATTTATATATTTTATCAAATAATTTTTCGTTTTCTTACTGCAAAGGGTGTTTGTAGCTATTGTCGTTTGTCTTCCTTAGGACTTTTCAGGCAAAAAAGAAACAAAACCCATTTTTCTAAATGTTTTTAGCTGGTGAAAGATAATCTCTTGGAAATGAAAAGTATATAGTCTGCATTCTGCAAGATGAACGATACAAAAGACTTGGAGTTGTAACCCTATACACCTACGAGACAATCATGCACAAGTGAAGTAGAATAGTAAGTTCTTTGAATCCTTTATCTTTTTGAGGAATCTGATATTCCAATACTTCAGGTCATTGATAATCTACGTCTTAAGCTTATTCGAGAACTAGTCCGACTGTGTCTCTGATGGGCAGGTTCATCTCCATCAATTCTTGTGTGAAAGGAATTTTTTATCTTCTTCCAACCAAATCCCCAACCTGCTATATTCTTTTGCTTGTTGCTTATTTTTTCATACTCTTGTTGTAGCTCTGAGTAGTCACTCTGCAACTCTGCCATCTGTGCCTTCACGCTCTCAAGTTCTGTCTTGAGGTTTTTAATTTCTCTGTCTGTTGATAAATGGTTTCCATCATGATCTGAGTCACTACTAGGTGCTTTCTCCTTTTCTTGCATCGCTGACCTCATCTTCACTTGCTCTGAGAACAGAACCTGCATATTCACTCAGAAATATTGTGATTACCACTCGGAACTGTTGACTCACTGCTTCTATAAAGTAAAAGATACGTAGAAATATAATATTGTAGTCTTCTTATATCTCTCGTTCCTTCTTGGTTCTGACTGCCAACTATATAAGTAGTGAAGGCATTGTTTCTCGTGTCGTTATTACTACGATGGAACGTTAATATGACTTTTTTACTATTGTATCAGAAGGAGAATACATAAAAGCATTATTATAATATTGATAATATATGAGGAGTTGGGAATGGGACTCGGAAGATGCTTCTACAATCTGCTTTTTGTTGATTTTTTTTATGAGAAGCTATTTATTTTGTATTTAACCTTGTTTCAAGATTTGTTATGGTGTATTTAGTATTCATGACCGATCATTTGTCTGTGGAGAAATAAGGGCAGCTGGTTTTAATAAGCCAAAATCCTTTTTGTCTACAACATTTGAGAGCCTATCTATATGTTCTGATTATTGTATCTGTTGAATGGTTTTTTTTTTAAAAAAAATTTGTTGAATGTCTGGGTTCAAGTTCAACCTCATATTTTTTTCTGTATGTGGCACATTCAGATATGCAACTATTCTTTGATCATGAGTATATGTTATGGCATTATAAATTTACAACTTCTTATCCTTTCTTGCTCATTTAGTTACATTCTATACTGCACTAGTTACGTTCTACAATCTAGATATATTGCTGGAATTTTGAACTACAGGGTTATATAATATCACCTGAACTATGGTTCTCAAGGGCAGTCGATCATTTTGGGCAGCATGCACACACGCATCAAGCGATAGTTTCTCGCAGTTCATGATTTTGCATAGCTTTCTTCGATCATGCTCAGATAGTAAAGGGTGAGTCTGTAGAGGAGAATAGTTTGTAAGTCGCTATAGTGAAATTTCTGCTATACTTCCAAGCATGTATAATTTGCTGCAGAAAATTATTAAGAACAAGATAATCTAGATGCAACCTTGAGATAGGTGTCAATGGCTCTGTATAATCCATCATGACAATGCCTTGCATTTTCTGACAGTGAGTTGGCTAAAGTTTGAAATTTGGTAATCGAGAGATTTGGATCTCTTGCAAGTTCAGCTAGGTAATTGTCTATGAGTTTACATACATTAGAATTCCCAATTCTATGTTGCTGCTGTTGCTGTTCAAACAGTGAGTAGTATTCAAGGAGCCTTTGCACTACTTCTATGTCATGCATAG

mRNA sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATCTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGCTCTGAGTAGTCACTCTGCAACTCTGCCATCTGTGCCTTCACGCTCTCAAGGTTATATAATATCACCTGAACTATGGTTCTCAAGGGCAGTCGATCATTTTGGGCAGCATGCACACACGCATCAAGCGATAAATTCCCAATTCTATGTTGCTGCTGTTGCTGTTCAAACAGTGAGTAGTATTCAAGGAGCCTTTGCACTACTTCTATGTCATGCATAG

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATCTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGCTCTGAGTAGTCACTCTGCAACTCTGCCATCTGTGCCTTCACGCTCTCAAGGTTATATAATATCACCTGAACTATGGTTCTCAAGGGCAGTCGATCATTTTGGGCAGCATGCACACACGCATCAAGCGATAAATTCCCAATTCTATGTTGCTGCTGTTGCTGTTCAAACAGTGAGTAGTATTCAAGGAGCCTTTGCACTACTTCTATGTCATGCATAG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSALSSHSATLPSVPSRSQGYIISPELWFSRAVDHFGQHAHTHQAINSQFYVAAVAVQTVSSIQGAFALLLCHA

Homology

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BLAST of CsGy4G008480 vs. NCBI nr
Match: XP_004137193.1 (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical protein Csa_4G095560 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 1.8e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 172

[Close]

BLAST of CsGy4G008480 vs. NCBI nr
Match: XP_008455593.1 (PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRS 172

[Close]

BLAST of CsGy4G008480 vs. NCBI nr
Match: XP_016901794.1 (PREDICTED: uncharacterized protein LOC103495731 isoform X2 [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRS 172

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BLAST of CsGy4G008480 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.4 bits (812), Expect = 4.3e-83
Identity = 162/172 (94.19%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAK+HWLHEKE VG+KTYKGFADRGRRR  GGAE VEPSTKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS 171

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BLAST of CsGy4G008480 vs. NCBI nr
Match: XP_022943267.1 (uncharacterized protein LOC111448049 [Cucurbita moschata])

HSP 1 Score: 313.9 bits (803), Expect = 4.7e-82
Identity = 161/172 (93.60%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAK+HWLHEKE VG+KTYKGFADRGRRR  GGAE VEPSTKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRS 171

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BLAST of CsGy4G008480 vs. TAIR10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein)

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-53
Identity = 114/175 (65.14%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAK DYKKAYVTLR+PLSIS D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKKHWLHEKEPVGIKTY-KGFADRGRRRSGG---GAETVEPSTKFPWSSMR 172
           EE + K HWL  KE   I  Y KG   RG  R+     G      + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

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BLAST of CsGy4G008480 vs. Swiss-Prot
Match: sp|Q605B4|RL23_METCA (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-06
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD V+ LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

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BLAST of CsGy4G008480 vs. Swiss-Prot
Match: sp|Q0I161|RL23_HAES1 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-06
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD V+T+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

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BLAST of CsGy4G008480 vs. Swiss-Prot
Match: sp|A0KF23|RL23_AERHH (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.4e-06
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

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BLAST of CsGy4G008480 vs. Swiss-Prot
Match: sp|A4ST04|RL23_AERS4 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rplW PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of CsGy4G008480 vs. Swiss-Prot
Match: sp|Q0ABH3|RL23_ALKEH (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  V+T+ M+GK+K+ G +   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

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BLAST of CsGy4G008480 vs. TrEMBL
Match: tr|A0A0A0L0J2|A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.2e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 172

[Close]

BLAST of CsGy4G008480 vs. TrEMBL
Match: tr|A0A1S3C191|A0A1S3C191_CUCME (uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 7.2e-87
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRS 172

[Close]

BLAST of CsGy4G008480 vs. TrEMBL
Match: tr|A0A1S4E0P8|A0A1S4E0P8_CUCME (uncharacterized protein LOC103495731 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 7.2e-87
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRS 172

[Close]

BLAST of CsGy4G008480 vs. TrEMBL
Match: tr|A0A2I4GE82|A0A2I4GE82_9ROSI (uncharacterized protein LOC108989236 OS=Juglans regia OX=51240 GN=LOC109007104 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64
Identity = 137/176 (77.84%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVH ANLPIKLLMP++FTNI EIALKTIPSASKIEIKRVLESLYGFEV+KV+
Sbjct: 1   MGSRLGRRVVHMANLPIKLLMPSTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISP+MYPIRIIEEDKR MN+QSKSS+V
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPEMYPIRIIEEDKRQMNRQSKSSVV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSALSS 177
           EEGE K+HWL EK     K  + F +RGR    G         KFPWSSMRSA SS
Sbjct: 121 EEGEGKRHWLDEKARAE-KAGERFGNRGRTGQRGDV------AKFPWSSMRSAASS 169

[Close]

BLAST of CsGy4G008480 vs. TrEMBL
Match: tr|A0A067LED8|A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64
Identity = 136/173 (78.61%), Postives = 150/173 (86.71%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVV+FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGIL+AKPDYKKAYVTLRNPLS+SPD+YP+RIIEE+K  MNKQ +SSIV
Sbjct: 61  TLNMEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSA 174
           E+GE KKHWL  K+   + + KG   R R R G G  TVE + KFPWSSMRSA
Sbjct: 121 EDGEGKKHWLDGKKEERVGSEKG---RRRDRGGVGDFTVE-NAKFPWSSMRSA 169

The following BLAST results are available for this feature:

BLAST of CsGy4G008480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137193.1	1.8e-89	100.00	PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hy...	[more]
XP_008455593.1	1.1e-86	97.09	PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo]	[more]
XP_016901794.1	1.1e-86	97.09	PREDICTED: uncharacterized protein LOC103495731 isoform X2 [Cucumis melo]	[more]
XP_023531609.1	4.3e-83	94.19	uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]	[more]
XP_022943267.1	4.7e-82	93.60	uncharacterized protein LOC111448049 [Cucurbita moschata]	[more]

BLAST of CsGy4G008480 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39880.1	2.5e-53	65.14	Ribosomal protein L23/L15e family protein	[more]

BLAST of CsGy4G008480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q605B4\|RL23_METCA	2.9e-06	40.00	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
sp\|Q0I161\|RL23_HAES1	6.4e-06	41.10	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
sp\|A0KF23\|RL23_AERHH	8.4e-06	44.07	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
sp\|A4ST04\|RL23_AERS4	1.1e-05	44.07	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rp...	[more]
sp\|Q0ABH3\|RL23_ALKEH	1.1e-05	42.37	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]

BLAST of CsGy4G008480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0J2\|A0A0A0L0J2_CUCSA	1.2e-89	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=4 SV=1	[more]
tr\|A0A1S3C191\|A0A1S3C191_CUCME	7.2e-87	97.09	uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E0P8\|A0A1S4E0P8_CUCME	7.2e-87	97.09	uncharacterized protein LOC103495731 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4GE82\|A0A2I4GE82_9ROSI	2.2e-64	77.84	uncharacterized protein LOC108989236 OS=Juglans regia OX=51240 GN=LOC109007104 P...	[more]
tr\|A0A067LED8\|A0A067LED8_JATCU	2.2e-64	78.61	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24040 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR013025	Ribosomal_L25/23

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G008480.1	CsGy4G008480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 30..90 e-value: 3.0E-15 score: 56.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..135 e-value: 3.4E-20 score: 74.6
None	No IPR available	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 6..134
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 26..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G008480	Cla004827	Watermelon (97103) v1	cgybwmB271
CsGy4G008480	Csa4G095560	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G008480	MELO3C018951	Melon (DHL92) v3.5.1	cgybmeB259
CsGy4G008480	ClCG10G009000	Watermelon (Charleston Gray)	cgybwcgB255
CsGy4G008480	CSPI04G08650	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G008480	CmaCh04G008240	Cucurbita maxima (Rimu)	cgybcmaB544
CsGy4G008480	CmoCh04G008810	Cucurbita moschata (Rifu)	cgybcmoB519
CsGy4G008480	CmoCh16G007660	Cucurbita moschata (Rifu)	cgybcmoB466
CsGy4G008480	Cp4.1LG14g01280	Cucurbita pepo (Zucchini)	cgybcpeB486
CsGy4G008480	MELO3C018951.2	Melon (DHL92) v3.6.1	cgybmedB257
CsGy4G008480	CsaV3_4G008860	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G008480	Cla97C10G192200	Watermelon (97103) v2	cgybwmbB263
CsGy4G008480	Bhi11G000833	Wax gourd	cgybwgoB346
CsGy4G008480	Carg05824	Silver-seed gourd	carcgybB1004
CsGy4G008480	Carg14224	Silver-seed gourd	carcgybB0929

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G008480	Cucurbita maxima (Rimu)	cgybcmaB496
CsGy4G008480	Cucurbita pepo (Zucchini)	cgybcpeB506
CsGy4G008480	Bottle gourd (USVL1VR-Ls)	cgyblsiB261