CmaCh04G008240 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G008240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein L23 family protein
Location	Cma_Chr04 : 4219898 .. 4220230 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTAAGAAGAAGAAGCGCGGAGGGCTTTTGATTGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTCTATCCCATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAAGAGGGAGAGGCCAAGAGGAATTGGCTGCATGAAAAGGAAGCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGCTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCCGGTAGGTAG

mRNA sequence

ATGGAAGGTAAGAAGAAGAAGCGCGGAGGGCTTTTGATTGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTCTATCCCATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAAGAGGGAGAGGCCAAGAGGAATTGGCTGCATGAAAAGGAAGCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGCTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCCGGTAGGTAG

Coding sequence (CDS)

ATGGAAGGTAAGAAGAAGAAGCGCGGAGGGCTTTTGATTGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTCTATCCCATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAAGAGGGAGAGGCCAAGAGGAATTGGCTGCATGAAAAGGAAGCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGCTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCCGGTAGGTAG

Protein sequence

MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR

Homology

[Close]

BLAST of CmaCh04G008240 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.5e-50
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIVEEG
Sbjct: 64  MEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR 111
           EAK++WLHEKE VG+KTYKGFADRGRRR  GGAE VEPSTKFPWSSMRSGR
Sbjct: 124 EAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of CmaCh04G008240 vs. TrEMBL
Match: A5BVA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.2e-33
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIVEEG
Sbjct: 373 MEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEG 432

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 111
           EAK +WL  K+    +  K  A+RGR   GGA A   + KFPWS MR+ R
Sbjct: 433 EAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA--AAKFPWSGMRASR 480

[Close]

BLAST of CmaCh04G008240 vs. TrEMBL
Match: D7T5V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIVEEG
Sbjct: 64  MEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 111
           EAK +WL  K+    +  K  A+RGR   GGA A   + KFPWS MR+ R
Sbjct: 124 EAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

[Close]

BLAST of CmaCh04G008240 vs. TrEMBL
Match: A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.3e-29
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGG+L+AKPDYKKAYVTLRNPLS+SPD+YP+RIIEE+K  MNKQ +SSIVE+G
Sbjct: 64  MEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIVEDG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS 109
           E K++WL  K+   + + KG   R R R G  +    + KFPWSSMRS
Sbjct: 124 EGKKHWLDGKKEERVGSEKG---RRRDRGGVGDFTVENAKFPWSSMRS 168

[Close]

BLAST of CmaCh04G008240 vs. TrEMBL
Match: A0A059AL68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-28
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGGLL+AKPDYKKAYVTLR+PLS+SPD++PIR++EED+R+ NK+  SS+VEEG
Sbjct: 64  MEGKKKKRGGLLVAKPDYKKAYVTLRSPLSVSPDLFPIRVVEEDRRSANKKGGSSMVEEG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 111
           E KR+WL  +E    K  K F +R R   GG+ A     KFPWS M+SGR
Sbjct: 124 ERKRHWLDGEERERRKREKEFGERVR---GGSGA-----KFPWSFMKSGR 165

[Close]

BLAST of CmaCh04G008240 vs. TAIR10
Match: AT4G39880.1 (AT4G39880.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           M+GKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P++ IEED+++  K S S + EE 
Sbjct: 64  MDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVEEED 123

Query: 61  EAKRNWLHEKEAVGLKTY-KGFADRGRRRIG----GAEAVEPSTKFPWSSMR 108
           + K +WL  KE   +  Y KG   RG  R      G  A   + KFPWS+MR
Sbjct: 124 DKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

[Close]

BLAST of CmaCh04G008240 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 9.4e-50
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIVEEG
Sbjct: 64  MEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIVEEG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR 111
           EAKR+WLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRSGR
Sbjct: 124 EAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of CmaCh04G008240 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIVEEG
Sbjct: 64  MEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR 111
           EAK++WLHEKE VG+KTYKGFADRGRRR  GGAE VEPSTKFPWSSMRSGR
Sbjct: 124 EAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of CmaCh04G008240 vs. NCBI nr
Match: gi|147784232|emb|CAN63891.1| (hypothetical protein VITISV_012657 [Vitis vinifera])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIVEEG
Sbjct: 373 MEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEG 432

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 111
           EAK +WL  K+    +  K  A+RGR   GGA A   + KFPWS MR+ R
Sbjct: 433 EAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA--AAKFPWSGMRASR 480

[Close]

BLAST of CmaCh04G008240 vs. NCBI nr
Match: gi|731438556|ref|XP_010647317.1| (PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera])

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIVEEG
Sbjct: 64  MEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 111
           EAK +WL  K+    +  K  A+RGR   GGA A   + KFPWS MR+ R
Sbjct: 124 EAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

[Close]

BLAST of CmaCh04G008240 vs. NCBI nr
Match: gi|731438554|ref|XP_002270942.3| (PREDICTED: uncharacterized protein LOC100245960 isoform X1 [Vitis vinifera])

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-32
Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 1


Query: 1   MEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEG 60
           MEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIVEEG
Sbjct: 64  MEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEG 123

Query: 61  EAKRNWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRS 109
           EAK +WL  K+    +  K  A+RGR   GGA A   + KFPWS MR+
Sbjct: 124 EAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAA---AAKFPWSGMRA 168

The following BLAST results are available for this feature:

BLAST of CmaCh04G008240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G008240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0J2_CUCSA	8.5e-50	91.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1	[more]
A5BVA7_VITVI	7.2e-33	69.09	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1	[more]
D7T5V5_VITVI	1.2e-32	69.09	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=...	[more]
A0A067LED8_JATCU	8.3e-29	63.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1	[more]
A0A059AL68_EUCGR	9.2e-28	62.73	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1	[more]

BLAST of CmaCh04G008240 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39880.1	1.0e-22	53.57	Ribosomal protein L23/L15e family protein	[more]

BLAST of CmaCh04G008240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111130\|ref\|XP_008455593.1\|	9.4e-50	92.79	PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo]	[more]
gi\|449438835\|ref\|XP_004137193.1\|	1.2e-49	91.89	PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus]	[more]
gi\|147784232\|emb\|CAN63891.1\|	1.0e-32	69.09	hypothetical protein VITISV_012657 [Vitis vinifera]	[more]
gi\|731438556\|ref\|XP_010647317.1\|	1.8e-32	69.09	PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera]	[more]
gi\|731438554\|ref\|XP_002270942.3\|	5.2e-32	69.44	PREDICTED: uncharacterized protein LOC100245960 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034654	nucleobase-containing compound biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0044699	single-organism process
biological_process	GO:0006412	translation
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0015992	proton transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005351	sugar:proton symporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G008240.1	CmaCh04G008240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 2..31 score: 5.
None	No IPR available	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 1..108 score: 1.7
None	No IPR available	PANTHER	PTHR12059:SF5	39S RIBOSOMAL PROTEIN L23, MITOCHONDRIAL	coord: 1..108 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G008240	Cucsa.273070	Cucumber (Gy14) v1	cgycmaB0767
CmaCh04G008240	Cla004827	Watermelon (97103) v1	cmawmB654
CmaCh04G008240	Csa4G095560	Cucumber (Chinese Long) v2	cmacuB711
CmaCh04G008240	MELO3C018951	Melon (DHL92) v3.5.1	cmameB698
CmaCh04G008240	ClCG10G009000	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G008240	CSPI04G08650	Wild cucumber (PI 183967)	cmacpiB717
CmaCh04G008240	CmoCh04G008810	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G008240	CmoCh16G007660	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G008240	Cp4.1LG14g01280	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G008240	MELO3C018951.2	Melon (DHL92) v3.6.1	cmamedB788
CmaCh04G008240	CsaV3_4G008860	Cucumber (Chinese Long) v3	cmacucB0845
CmaCh04G008240	Cla97C10G192200	Watermelon (97103) v2	cmawmbB718
CmaCh04G008240	Bhi11G000833	Wax gourd	cmawgoB0822
CmaCh04G008240	CsGy4G008480	Cucumber (Gy14) v2	cgybcmaB544
CmaCh04G008240	Carg05824	Silver-seed gourd	carcmaB1414
CmaCh04G008240	Carg14224	Silver-seed gourd	carcmaB1288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G008240	Melon (DHL92) v3.6.1	cmamedB804
CmaCh04G008240	Cucumber (Chinese Long) v3	cmacucB0917
CmaCh04G008240	Watermelon (97103) v2	cmawmbB712
CmaCh04G008240	Wax gourd	cmawgoB0883
CmaCh04G008240	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh04G008240	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh04G008240	Cucurbita moschata (Rifu)	cmacmoB727
CmaCh04G008240	Wild cucumber (PI 183967)	cmacpiB785
CmaCh04G008240	Melon (DHL92) v3.5.1	cmameB710
CmaCh04G008240	Watermelon (Charleston Gray)	cmawcgB639
CmaCh04G008240	Watermelon (97103) v1	cmawmB715
CmaCh04G008240	Cucurbita pepo (Zucchini)	cmacpeB702
CmaCh04G008240	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G008240	Cucurbita pepo (Zucchini)	cmacpeB741
CmaCh04G008240	Bottle gourd (USVL1VR-Ls)	cmalsiB639
CmaCh04G008240	Bottle gourd (USVL1VR-Ls)	cmalsiB664