CU097441 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU097441
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 6253804 .. 6254453 (-)
Sequence length	557

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCCTCGCCCTCCTCAACAATGCTGGACTTAGACTGCTTGTTTCATATTCCTCTTATCCTCCTCTATAATGCGGATCGGGGTACATGTCCGGAGATATTGACAAGGGGATTTCTGAGAGTAACATAGGCCTTCTTGTAATCAGGCTTTGCGATCAAGATCCCTCCACGCTTCTTTTTCTTCCCCTCCAATAGTTAAGAGTTTGAACTTTATCGACCTCAAAGCCGTAAAGGCTCTCAAGGACGCGCTTGATTTCAATTTTGGAAGCAGAAGGAATGGTTTTAAGAGCAATTTCAGTGATGTTGGTAAAAGAGGTAGGCATAAGAAGCTTGATTGGAAGATTTGCGAAGTGAACAACTCTTCTCCCGAGTCTGCTTCCCATGTTCCTGGATTTCTTGGCTTCCGCGTCTATGAACAGCAGGTGAAGAGATCCTGTGGATTGTAGATTTGTACTCGCAAGCTTTCAGCGAACTGAAGGGATTTGGGACCGAACGGCGAGGTGCACTGCTGGGACTATTAGGCCTTCTGCTGGGATAATAGCGGTCGTAGACCCCCGGCCG

Library


Library category	ESTs
fruit (8DPP) library	4
gynoecious flower library	1
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU097441 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.6e-30
Identity = 76/101 (75.25%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLSISPDMYP
Sbjct: 61  TLN-MEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = -1


Query: 3   ILIAKPDYKKAYVTLRNPLVNISGHVPRSAL*RRIRGI*NKQSKSSIVEEGE 62
           ILIAKPDYKKAYVTLRNPL       P   +    R + NKQSKSSIVEEGE
Sbjct: 74  ILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNM-NKQSKSSIVEEGE 124

Query: 63   122
           
Sbjct: 134  124

Query: 123  159
           
Sbjct: 194  124

HSP 2 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLS+SPD++P
Sbjct: 61  TLN-MEGKKKKRGGLLVAKPDYKKAYVTLRSPLSVSPDLFP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. TrEMBL
Match: A0A059AL68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.8e-02
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = -1


Query: 3   ILIAKPDYKKAYVTLRNPLVNISGHVPRSAL*RRIRGI*NKQSKSSIVEEGE 62
           +L+AKPDYKKAYVTLR+PL ++S  +    +    R   NK+  SS+VEEGE
Sbjct: 74  LLVAKPDYKKAYVTLRSPL-SVSPDLFPIRVVEEDRRSANKKGGSSMVEEGE 124

Query: 63   122
           
Sbjct: 134  124

Query: 123  159
           
Sbjct: 194  124

HSP 2 Score: 129.0 bits (323), Expect = 5.9e-27
Identity = 70/101 (69.31%), Postives = 80/101 (79.21%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVV+FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLS+SPD+YP
Sbjct: 61  TLN-MEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. TrEMBL
Match: A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-03
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = -1


Query: 3   ILIAKPDYKKAYVTLRNPLVNISGHVPRSAL*RRIRGI*NKQSKSSIVEEGE 62
           IL+AKPDYKKAYVTLRNPL ++S  +    +    +   NKQ +SSIVE+GE
Sbjct: 74  ILLAKPDYKKAYVTLRNPL-SVSPDLYPLRIIEEEKERMNKQRRSSIVEDGE 124

Query: 63   122
           
Sbjct: 134  124

Query: 123  159
           
Sbjct: 194  124

HSP 2 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVV+FAN+PIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVD+V+
Sbjct: 1   MGSRLGRRVVNFANIPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDEVR 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLSISPD+YP
Sbjct: 61  TLN-MDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDLYP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. TrEMBL
Match: A0A124SC01_CYNCS (Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd_005742 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.7e-03
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = -1


Query: 3   ILIAKPDYKKAYVTLRNPLVNISGHVPRSAL*RRIRGI*NKQSKSSIVEEGE 62
           +LIAKPDYKKAYVTLRNPL +IS  +    +    R   +KQSKSSIVE  E
Sbjct: 74  LLIAKPDYKKAYVTLRNPL-SISPDLYPIRVIEEERKNMSKQSKSSIVEGDE 124

Query: 63   122
           
Sbjct: 134  124

Query: 123  159
           
Sbjct: 194  124

HSP 2 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVV+FAN+PIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEV+KVQ
Sbjct: 1   MGSRLGRRVVNFANIPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVEKVQ 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLSISPD++P
Sbjct: 61  TLN-MDGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDLFP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 76/101 (75.25%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLSISPDMYP
Sbjct: 61  TLN-MEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. NCBI nr
Match: gi|702459884|ref|XP_010027851.1| (PREDICTED: uncharacterized protein LOC104418266 [Eucalyptus grandis])

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLS+SPD++P
Sbjct: 61  TLN-MEGKKKKRGGLLVAKPDYKKAYVTLRSPLSVSPDLFP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 5.8e-28
Identity = 73/101 (72.28%), Postives = 80/101 (79.21%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +    PLSIS DMYP
Sbjct: 61  TLN-MEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. NCBI nr
Match: gi|802537059|ref|XP_012090274.1| (PREDICTED: uncharacterized protein LOC105648393 isoform X2 [Jatropha curcas])

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVV+FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +  + PLS+SPD+YP
Sbjct: 61  TLN-MEGKKKKRGGILLAKPDYKKAYVTLKNPLSVSPDLYP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

[Close]

BLAST of CU097441 vs. NCBI nr
Match: gi|694420378|ref|XP_009338103.1| (PREDICTED: uncharacterized protein LOC103930484 [Pyrus x bretschneideri])

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 68/101 (67.33%), Postives = 81/101 (80.20%), Query Frame = -2


Query: 77  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 136
           MGSRLGRRVVHFANLPIKLLMP +FTNITEIALKTIPSASKIEIKRV+ESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPNNFTNITEIALKTIPSASKIEIKRVMESLYGFQVDKVR 60

Query: 137 TLNYWRGRKRSVEGS*SQSLITRRPMLLSEIPLSISPDMYP 196
           TLN   G+K+   G        ++  +  ++PLS+S D+YP
Sbjct: 61  TLN-MEGKKKKRGGLLIAKPDYKKAYVTLKVPLSLSQDLYP 100

Query: 197  256
           
Sbjct: 121  100

Query: 257  316
           
Sbjct: 181  100

Query: 317  376
           
Sbjct: 241  100

Query: 377  380
           
Sbjct: 301  100

The following BLAST results are available for this feature:

BLAST of CU097441 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0J2_CUCSA	9.6e-30	75.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1	[more]
A0A0A0L0J2_CUCSA	2.8e-05	65.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1	[more]
A0A059AL68_EUCGR	3.8e-02	51.92	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1	[more]
A0A067LED8_JATCU	2.0e-03	55.77	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1	[more]
A0A124SC01_CYNCS	7.7e-03	59.62	Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd...	[more]

BLAST of CU097441 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438835\|ref\|XP_004137193.1\|	1.1e-29	75.25	PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus]	[more]
gi\|702459884\|ref\|XP_010027851.1\|	2.0e-28	71.29	PREDICTED: uncharacterized protein LOC104418266 [Eucalyptus grandis]	[more]
gi\|659111130\|ref\|XP_008455593.1\|	5.8e-28	72.28	PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo]	[more]
gi\|802537059\|ref\|XP_012090274.1\|	4.9e-27	69.31	PREDICTED: uncharacterized protein LOC105648393 isoform X2 [Jatropha curcas]	[more]
gi\|694420378\|ref\|XP_009338103.1\|	4.9e-27	67.33	PREDICTED: uncharacterized protein LOC103930484 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR013025	Ribosomal_L25/23

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G095560	Csa4G095560	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KYX1M	FKNP3UI02KYX1M	EST
FKNP3UI02M8450	FKNP3UI02M8450	EST
FKNP3UI02N28EO	FKNP3UI02N28EO	EST
FKNP3UI02NWF9V	FKNP3UI02NWF9V	EST
G0109136	G0109136	EST
H0055261	H0055261	EST
H0179043	H0179043	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 90..129 score: 1.
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 76..129 score: 1.4
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 89..129 score: 5.
None	No IPR available	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 64..134 score: 5.9
None	No IPR available	PANTHER	PTHR12059:SF5	39S RIBOSOMAL PROTEIN L23, MITOCHONDRIAL	coord: 64..134 score: 5.9