CsGy2G002450 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G002450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprobable E3 ubiquitin-protein ligase RHY1A
LocationChr2 : 1621904 .. 1625581 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTGTAGTTGGGTTTTTTTTTTCGGTGGAATTGGTATTTCTAATTCATTTGCTCAAACCGAGAAGCTCCATTGGTTCTGAGTTGAAATCGTATTTGTCTTTGTTGTTTAATGGATTTTGAGTTGAAAATATTACTTTAATCCCTTCCTCTCACATTTCTCCATCTTCCATTTTACCTCTGTTTTCAAGCTTCTTCTTCGTGTTCTTCGTTTCTCTGCTTTTGCGTGTTGTCTTTTTTCCGTTCAGTCCCTGTGAATTAGCGATTTCGTTGGTTTGATTAATTTTGATGAAACTCGGTTGATTTTGAGATGAAATTAGTGAGTGTGGATTTGAGAATTTGTACTTGTGTTTCTTCGTTTTCTGTGAAATGGGTATTTTGAGTTGAAATCATCTTGAGTTTAATCCAATTAGATTTCACCATTTCTATCTCGATTATTTCCGATTTTAATCTAACAAAAAACTCGTTGATCGATGGCCGGAATGTTACCCGGAGTTGAATGTGCTAGAAGGAGGCGGTTCCACCAGAGCATAAACTCATCGGACTCGCCGTTCACGGCAGGGAAATCAGGATCTACAAGAAGACCATCGTTCTGTTTGTACACAAGCAACCGCGATTTTCATCTAATTTCATCATCTTCGTCACAGGTTATTATGAATAAAAATCTAAAAAATTTCCCTCTTATCTTTTTTGTTTCTTGGGAAAATCTGATGAGTTGTTTGTTTGAAATTTGAAATTAAGCAACGGAGCTTAACGAATCAAGCTTATCAGAACGATAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGGACTCACCGAAAACCTGAAAATTCAAGGTGATTGCTTCATCATCCACCTTATTTATGTTTGCCATTATTTTAATCTCCCTTTCCTTTCTGTTCTATTATAAATTAACCGTTTGTTAATTGAAAGAACGATGACCCTTTGAGGGGGCCAGATGAAACATGACCCAAGTTATAAAATATTCAAAAAATGCCTTTTGTTTGTCAGCTTTGATAGTGGTAAAAGTATCAATCTAACCTAAACACGCTCTACCTCCGGTACGGTGCTCTCATGGATTTACGTTCATTCTCCTCTCGTTTTGGATTTCTTCTTCACGTTCTTTGTCAGTCACACCTCGATATCGTTTTAAACGTTTTCCATTTTTTCCGTGTTCTTTCTTGATCTTCTTACTCTGGTTTCCATTTGCAGTCTTTTTCTCTTCCTCCTCCTCTTCTTTTCACTTCTTCTTCTTCTTCCTTCTAAGAGAGAGAGTGAGGGTACAAAGTTAGAGAAAAAAACCCAAAAGCCTAACGAAGAACAAGACTAAACGACAGTGTCAAGCCCTCCAGCACATTCTCGATACTTTCACAATTGACTTAACATACCAAAAAAAACCATCTTTTGATATCAACTTTGGGTTATTCTTCATCTGGGCCTCCAAAAGGAGACTATTCATTAATAAAATCCCAAATTTTAAAGGGCATTTAGGAAGCTTGGTAGCTAAAGGAGATGATTATTATGATTAGTGAATTGTAGTATTAATAAATTGTGTTTAGAATAGTTTGTAATTGGGGTAAAGACTATTTTAATTGAGTAGTAAAAAACGATAATAACGATGTAGTTAATTGTCAATAATAGTAGTTGGAAAGTTTCAAGTATTTGATTGGATCCGTGCATAAGATGAACTACAATAATCACTCCATAAGTTTAAATATTGCCTAAATGTTCCTAATAGATTAATGGTGCAATTGAAAAGTTTAAAAGATGGGAATCAAATTGAAATTTGATCAAATGATTTGACTTCGTAAATAAATAAAAAGTTAAATATATCATTTTAGTTTCTATGTTTTCAATTAATATAAAGTTTAGTATAATTTAATTGAAATGAAATAAATAGTAATAATTTTATAATACAAATTAAATGTTATCAAAATTTATAGTGAAAGTTCTTGCTCATAATAATTCATAAATAAACTATTAGTAGTGACCAAATCTAAACTTTGGTTAAAATTCAACCCTTCAAAACATATAATTAAAACTTAAAATTGGATTTTGTTAGATTTTATCTCATTTATTTATTTGAACATAGATGTCTTTATAGTTAACAATTAGAAAAGTTAGTTTAAATTACAAAACCTCTAGAAACCTCTAAAAACAGTAATATTAGTTCATCATATTCTAGGTAAGTTAGACGGTAATATTTTGCTATATTTTATAAATATTTATATTTTATTTTAGTCCATTTTGGTTGAAGTCGTTCAATCATTAAATGAAGGCTCTAATTCATGGTAAATCTAATTCATGGTAAAGATAATTATATTTAGTCATTGCAATTACTTCCATTAAATCGTTGACCAATTTCATTAAAAATCATTGAAAAATCTAAATTTAATAATTAAGCCAAAACGTGGGCATACTAGCCACTACAATGCACACTAGAACAAATTTATATCAATCTTCTGTTAAATAGTTATAAATTGTTTAAAAGTAAAAGTATGTATCGTTCAATCTACGTAAGAATATGAATGTGCTAGTAATTAAGAATTTCGTGATTTAAATTTTTTAGTAAAAGAATAAGTATTAAGTAGGAAATTAAAAATTAAAGGAAAAAACATATGGTTCAAGCATGATAGCATGAAATTTATGTATTTGTTTTCTTATGAAATTTATATATTTTTCTTACTTACGAGTCGAATAGAATAATGTAGATATTGAGTTTTTGTTTTTAGAAACTGATTAAGAATTCAACGATGAACTGATAAAAAAAAATAATAATAGAAGATGACGGTAGATGAAACATACTCTCATAACTATAAAAACTAAGTCAAAACCATATTCAAATAAATCGACTTTTATAACTTTAATCTAACAAGTGAATCAATAATGTATGAAGCTCTTTTTTATTTTTGGTACAATACTTATATATATACACACAGGAAGAAAAACAACAATGAAGAAGTAAAGGGGAAGGAATCAAGAGAAAAAAATAATGGTGAGAAGAAAGAGATGAAGAATACAAAAGGAAAAGAAGAAGAAACAAAGAAAAGGTTTAGTTGGGGCCGGAAGCTAATGAAATGGAAAGCCTCGGAGCAAGAAGAGTGCAGCGTTTGTCTAGAACGGTTCAGACTGAGCGAGCCACTGCTCCATCTTCCATGCGCCCATAAGTTCCATTCCACTTGCTTGGTCCCTTGGCTCCAAGCCAATGCCCACTGCCCTTGCTGCCGCTTCCCTATAGCCGTCCCCTCCCAATAATAAACCTAACTCTAGAGTTTTATATTTGGTTAGATGTCAAAGAGTTGCGTTAATGACGTATAAATGGGTTAATGATCCAAACATCCATGGTTTAAAATATACAATACACCATGGTGTTACTATTAAATTATATATGACATTAAATAATCGAAATAACTTTTTAGTTATGGAGTCTTTCAATTTTAGTTTATGATATCGATGAAAGGTTAAATTTTAATTATTGTATTTTTAATTTAACCCTTTCAAAATTTGAAATTTTGTTTAATAATGACATTAATATTTTCAAAAATGATTGTGAATGGCAAAAGTAAATGAAAATGACTGTGAATGGCAAAAATAACAAAAGAAAATTTAATGTCTATAAATAATTTGGTCTATTTTGCTACACTAAATTTTATGCATG

mRNA sequence

ATTTTGTAGTTGGGTTTTTTTTTTCGGTGGAATTGGTATTTCTAATTCATTTGCTCAAACCGAGAAGCTCCATTGGTTCTGAGTTGAAATCGTATTTGTCTTTGTTGTTTAATGGATTTTGAGTTGAAAATATTACTTTAATCCCTTCCTCTCACATTTCTCCATCTTCCATTTTACCTCTGTTTTCAAGCTTCTTCTTCGTGTTCTTCGTTTCTCTGCTTTTGCGTGTTGTCTTTTTTCCGTTCAGTCCCTGTGAATTAGCGATTTCGTTGGTTTGATTAATTTTGATGAAACTCGGTTGATTTTGAGATGAAATTAGTGAGTGTGGATTTGAGAATTTGTACTTGTGTTTCTTCGTTTTCTGTGAAATGGGTATTTTGAGTTGAAATCATCTTGAGTTTAATCCAATTAGATTTCACCATTTCTATCTCGATTATTTCCGATTTTAATCTAACAAAAAACTCGTTGATCGATGGCCGGAATGTTACCCGGAGTTGAATGTGCTAGAAGGAGGCGGTTCCACCAGAGCATAAACTCATCGGACTCGCCGTTCACGGCAGGGAAATCAGGATCTACAAGAAGACCATCGTTCTGTTTGTACACAAGCAACCGCGATTTTCATCTAATTTCATCATCTTCGTCACAGCAACGGAGCTTAACGAATCAAGCTTATCAGAACGATAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGGACTCACCGAAAACCTGAAAATTCAAGGTGATTGCTTCATCATCCACCTTATTTATGTTTGCCATTATTTTAATCTCCCTTTCCTTTCTGTTCTATTATAAATTAACCGTTTGTTAATTGAAAGAACGATGACCCTTTGAGGGGGCCAGATGAAACATGACCCAAGTTATAAAATATTCAAAAAATGCCTTTTGTTTGTCAGCTTTGATAGTGGTAAAAGTATCAATCTAACCTAAACACGCTCTACCTCCGGTACGGTGCTCTCATGGATTTACGTTCATTCTCCTCTCGTTTTGGATTTCTTCTTCACGTTCTTTGTCAGTCACACCTCGATATCGTTTTAAACGTTTTCCATTTTTTCCGTGTTCTTTCTTGATCTTCTTACTCTGGTTTCCATTTGCAGTCTTTTTCTCTTCCTCCTCCTCTTCTTTTCACTTCTTCTTCTTCTTCCTTCTAAGAGAGAGAGTGAGGGTACAAAGTTAGAGAAAAAAACCCAAAAGCCTAACGAAGAACAAGACTAAACGACAGTGTCAAGCCCTCCAGCACATTCTCGATACTTTCACAATTGACTTAACATACCAAAAAAAACCATCTTTTGATATCAACTTTGGGTTATTCTTCATCTGGGCCTCCAAAAGGAGACTATTCATTAATAAAATCCCAAATTTTAAAGGGCATTTAGGAAGCTTGGTAGCTAAAGGAGATGATTATTATGATTAGTGAATTGTAGTATTAATAAATTGTGTTTAGAATAGTTTGTAATTGGGGTAAAGACTATTTTAATTGAGTAGTAAAAAACGATAATAACGATGTAGTTAATTGTCAATAATAGTAGTTGGAAAGTTTCAAGTATTTGATTGGATCCGTGCATAAGATGAACTACAATAATCACTCCATAAGTTTAAATATTGCCTAAATGTTCCTAATAGATTAATGGTGCAATTGAAAAGTTTAAAAGATGGGAATCAAATTGAAATTTGATCAAATGATTTGACTTCGTAAATAAATAAAAAGTTAAATATATCATTTTAGTTTCTATGTTTTCAATTAATATAAAGTTTAGTATAATTTAATTGAAATGAAATAAATAGTAATAATTTTATAATACAAATTAAATGTTATCAAAATTTATAGTGAAAGTTCTTGCTCATAATAATTCATAAATAAACTATTAGTAGTGACCAAATCTAAACTTTGGTTAAAATTCAACCCTTCAAAACATATAATTAAAACTTAAAATTGGATTTTGTTAGATTTTATCTCATTTATTTATTTGAACATAGATGTCTTTATAGTTAACAATTAGAAAAGTTAGTTTAAATTACAAAACCTCTAGAAACCTCTAAAAACAGTAATATTAGTTCATCATATTCTAGGTAAGTTAGACGGTAATATTTTGCTATATTTTATAAATATTTATATTTTATTTTAGTCCATTTTGGTTGAAGTCGTTCAATCATTAAATGAAGGCTCTAATTCATGGTAAATCTAATTCATGTCATTGCAATTACTTCCATTAAATCGTTGACCAATTTCATTAAAAATCATTGAAAAATCTAAATTTAATAATTAAGCCAAAACGTGGGCATACTAGCCACTACAATGCACACTAGAACAAATTTATATCAATCTTCTGTTAAATAGTTATAAATTGTTTAAAAGTAAAAGTATGTATCGTTCAATCTACGTAAGAATATGAATGTGCTAGTAATTAAGAATTTCGTGATTTAAATTTTTTAGTAAAAGAATAAGTATTAAGTAGGAAATTAAAAATTAAAGGAAAAAACATATGGTTCAAGCATGATAGCATGAAATTTATGTATTTGTTTTCTTATGAAATTTATATATTTTTCTTACTTACGAGTCGAATAGAATAATGTAGATATTGAGTTTTTGTTTTTAGAAACTGATTAAGAATTCAACGATGAACTGATAAAAAAAAATAATAATAGAAGATGACGGTAGATGAAACATACTCTCATAACTATAAAAACTAAGTCAAAACCATATTCAAATAAATCGACTTTTATAACTTTAATCTAACAAGTGAATCAATAATGTATGAAGCTCTTTTTTATTTTTGGTACAATACTTATATATATACACACAGGAAGAAAAACAACAATGAAGAAGTAAAGGGGAAGGAATCAAGAGAAAAAAATAATGGTGAGAAGAAAGAGATGAAGAATACAAAAGGAAAAGAAGAAGAAACAAAGAAAAGGTTTAGTTGGGGCCGGAAGCTAATGAAATGGAAAGCCTCGGAGCAAGAAGAGTGCAGCGTTTGTCTAGAACGGTTCAGACTGAGCGAGCCACTGCTCCATCTTCCATGCGCCCATAAGTTCCATTCCACTTGCTTGGTCCCTTGGCTCCAAGCCAATGCCCACTGCCCTTGCTGCCGCTTCCCTATAGCCGTCCCCTCCCAATAATAAACCTAACTCTAGAGTTTTATATTTGGTTAGATGTCAAAGAGTTGCGTTAATGACGTATAAATGGGTTAATGATCCAAACATCCATGGTTTAAAATATACAATACACCATGGTGTTACTATTAAATTATATATGACATTAAATAATCGAAATAACTTTTTAGTTATGGAGTCTTTCAATTTTAGTTTATGATATCGATGAAAGGTTAAATTTTAATTATTGTATTTTTAATTTAACCCTTTCAAAATTTGAAATTTTGTTTAATAATGACATTAATATTTTCAAAAATGATTGTGAATGGCAAAAGTAAATGAAAATGACTGTGAATGGCAAAAATAACAAAAGAAAATTTAATGTCTATAAATAATTTGGTCTATTTTGCTACACTAAATTTTATGCATG

Coding sequence (CDS)

ATGGCCGGAATGTTACCCGGAGTTGAATGTGCTAGAAGGAGGCGGTTCCACCAGAGCATAAACTCATCGGACTCGCCGTTCACGGCAGGGAAATCAGGATCTACAAGAAGACCATCGTTCTGTTTGTACACAAGCAACCGCGATTTTCATCTAATTTCATCATCTTCGTCACAGCAACGGAGCTTAACGAATCAAGCTTATCAGAACGATAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGGACTCACCGAAAACCTGAAAATTCAAGGTGA

Protein sequence

MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQRSLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR
Homology
[Close]
BLAST of CsGy2G002450 vs. NCBI nr
Match: XP_004139268.1 (PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus] >KGN60748.1 hypothetical protein Csa_2G009360 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 3.1e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]
BLAST of CsGy2G002450 vs. NCBI nr
Match: XP_008456709.1 (PREDICTED: RING-H2 finger protein ATL16 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-41
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SINSSDSP TA KSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          SLTN+A+QN+KLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]
BLAST of CsGy2G002450 vs. NCBI nr
Match: XP_022946687.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita moschata])

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSS-SQQ 60
          MAGMLPGVECARRRRFHQSI SSD+P TA K GSTRRPSFCLYTSNRDFH+ SSSS SQQ
Sbjct: 1  MAGMLPGVECARRRRFHQSITSSDTPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSCSQQ 60

Query: 61 RSLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          RS ++QAYQN+KLGEIAREAKERLDERLRTHRKPEN R
Sbjct: 61 RSSSHQAYQNEKLGEIAREAKERLDERLRTHRKPENPR 98

[Close]
BLAST of CsGy2G002450 vs. NCBI nr
Match: XP_022143236.1 (E3 ubiquitin-protein ligase EL5 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 8.5e-35
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSI SSDSP TA K GSTRRPSFCLYTSNRDFHL +SSS+QQR
Sbjct: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHL-TSSSTQQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPE 95
          S +NQA+QNDKLGEIAREAKERLDERL+T R+PE
Sbjct: 61 SWSNQAFQNDKLGEIAREAKERLDERLKTRRRPE 93

[Close]
BLAST of CsGy2G002450 vs. NCBI nr
Match: XP_023538036.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 5.5e-34
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSI SSDS  TA K GSTRR SFCLYTSNRDFHL +SSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYTSNRDFHL-TSSSSQQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENS 97
            +N AYQN+KLG+ AREAKERLDERLRTHRKPENS
Sbjct: 61 CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENS 95

[Close]
BLAST of CsGy2G002450 vs. TAIR10
Match: AT2G15580.1 (RING/U-box superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 5.4e-15
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFH---QSINSSDSPFTAGKSGS--TRRPSFCLYTSNRDFHLISSS 60
          MAGMLPGVECARRRRFH     I SS++   A  +G   TRRPSF LYT+N + H    S
Sbjct: 1  MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61 SSQQRSLTNQAYQND---KLGEIAREAKERLDERLR 89
           S +RS+ N++Y  D   KL   A+EAK+RL++RLR
Sbjct: 61 FS-ERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

[Close]
BLAST of CsGy2G002450 vs. TrEMBL
Match: tr|A0A0A0LG47|A0A0A0LG47_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009360 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]
BLAST of CsGy2G002450 vs. TrEMBL
Match: tr|A0A1S3C563|A0A1S3C563_CUCME (RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103496570 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SINSSDSP TA KSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          SLTN+A+QN+KLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]
BLAST of CsGy2G002450 vs. TrEMBL
Match: tr|A5ASH9|A5ASH9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS   SDSP T    G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          S+ NQAY ++KLG +AREAKERLDERLRT RK E +R
Sbjct: 61 SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTR 96

[Close]
BLAST of CsGy2G002450 vs. TrEMBL
Match: tr|F6HCI8|F6HCI8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS   SDSP T    G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          S+ NQAY ++KLG +AREAKERLDERLRT RK E +R
Sbjct: 61 SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTR 96

[Close]
BLAST of CsGy2G002450 vs. TrEMBL
Match: tr|A0A061GN77|A0A061GN77_THECC (RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_038262 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 70/97 (72.16%), Postives = 77/97 (79.38%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS  +SDSP T    G TRR SFCLYTSN + H  SS SSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGASDSPSTV-PIGWTRRSSFCLYTSNHETH-HSSVSSQQR 60

Query: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 98
          S+ NQA Q++KLGE+AREAKERLDERLR+ RK E  R
Sbjct: 61 SILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKR 95

The following BLAST results are available for this feature:
BLAST of CsGy2G002450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139268.13.1e-45100.00PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus] >KGN60748.1 hypothetic... [more]
XP_008456709.11.6e-4193.81PREDICTED: RING-H2 finger protein ATL16 [Cucumis melo][more]
XP_022946687.17.0e-3786.73probable E3 ubiquitin-protein ligase RHY1A [Cucurbita moschata][more]
XP_022143236.18.5e-3586.17E3 ubiquitin-protein ligase EL5 [Momordica charantia][more]
XP_023538036.15.5e-3484.38probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy2G002450 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15580.15.4e-1553.13RING/U-box superfamily protein[more]
BLAST of CsGy2G002450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G002450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LG47|A0A0A0LG47_CUCSA2.1e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009360 PE=4 SV=1[more]
tr|A0A1S3C563|A0A1S3C563_CUCME1.1e-4193.81RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103496570 PE=4 SV=1[more]
tr|A5ASH9|A5ASH9_VITVI8.2e-2671.13Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034074 PE=4 SV=1[more]
tr|F6HCI8|F6HCI8_VITVI8.2e-2671.13Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0118g00780 PE=4 SV=... [more]
tr|A0A061GN77|A0A061GN77_THECC1.5e-2472.16RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_038262 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G002450.1CsGy2G002450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..70
NoneNo IPR availablePANTHERPTHR14155:SF215SUBFAMILY NOT NAMEDcoord: 2..96
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 2..96

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G002450Cla013602Watermelon (97103) v1cgybwmB140
CsGy2G002450Cla018695Watermelon (97103) v1cgybwmB166
CsGy2G002450Csa1G265120Cucumber (Chinese Long) v2cgybcuB054
CsGy2G002450Csa2G009360Cucumber (Chinese Long) v2cgybcuB056
CsGy2G002450MELO3C010264Melon (DHL92) v3.5.1cgybmeB094
CsGy2G002450MELO3C004441Melon (DHL92) v3.5.1cgybmeB120
CsGy2G002450ClCG02G017240Watermelon (Charleston Gray)cgybwcgB119
CsGy2G002450ClCG06G012030Watermelon (Charleston Gray)cgybwcgB145
CsGy2G002450CSPI01G17250Wild cucumber (PI 183967)cgybcpiB054
CsGy2G002450CSPI02G02370Wild cucumber (PI 183967)cgybcpiB056
CsGy2G002450CmaCh12G011620Cucurbita maxima (Rimu)cgybcmaB178
CsGy2G002450CmaCh11G004930Cucurbita maxima (Rimu)cgybcmaB160
CsGy2G002450CmaCh10G004940Cucurbita maxima (Rimu)cgybcmaB152
CsGy2G002450CmoCh11G004920Cucurbita moschata (Rifu)cgybcmoB152
CsGy2G002450CmoCh12G011850Cucurbita moschata (Rifu)cgybcmoB170
CsGy2G002450CmoCh10G005270Cucurbita moschata (Rifu)cgybcmoB144
CsGy2G002450Lsi11G003860Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G002450Cp4.1LG07g11020Cucurbita pepo (Zucchini)cgybcpeB262
CsGy2G002450Cp4.1LG04g08890Cucurbita pepo (Zucchini)cgybcpeB238
CsGy2G002450Cp4.1LG18g05490Cucurbita pepo (Zucchini)cgybcpeB208
CsGy2G002450Cp4.1LG11g10360Cucurbita pepo (Zucchini)cgybcpeB168
CsGy2G002450MELO3C010264.2Melon (DHL92) v3.6.1cgybmedB091
CsGy2G002450MELO3C004441.2Melon (DHL92) v3.6.1cgybmedB118
CsGy2G002450CsaV3_2G003550Cucumber (Chinese Long) v3cgybcucB064
CsGy2G002450CsaV3_1G028490Cucumber (Chinese Long) v3cgybcucB061
CsGy2G002450Cla97C06G121210Watermelon (97103) v2cgybwmbB145
CsGy2G002450Cla97C02G042930Watermelon (97103) v2cgybwmbB114
CsGy2G002450Bhi06G001575Wax gourdcgybwgoB133
CsGy2G002450Carg23020Silver-seed gourdcarcgybB1053
CsGy2G002450Carg17455Silver-seed gourdcarcgybB0269
CsGy2G002450Carg09968Silver-seed gourdcarcgybB0139
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsGy2G002450CsGy1G017460Cucumber (Gy14) v2cgybcgybB013
The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G002450Wax gourdcgybwgoB203
CsGy2G002450Cucurbita maxima (Rimu)cgybcmaB257
CsGy2G002450Cucurbita moschata (Rifu)cgybcmoB243
CsGy2G002450Bottle gourd (USVL1VR-Ls)cgyblsiB122
CsGy2G002450Watermelon (Charleston Gray)cgybwcgB133
CsGy2G002450Watermelon (97103) v1cgybwmB122