Cp4.1LG11g10360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g10360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc/RING finger protein 3
LocationCp4.1LG11 : 8646596 .. 8648573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGGTCTCTATACACTCTCCGTTTTACTTTTGAGTGACTACATTTCTTGTTGTTGTACGCTCTCTCGCCTTCAATGGCATGGACCCGCTTGTGTTTGTTACCCTCATCACTCCCCAGCTTCTTGCCCTTCTTACTTTATCCTTATTTTAGTTCCTCCCACTCCCACTTCCCTATCTTCGATTTCACCAGATTTTATTCGCTTGTTTCTTCATGTTCTTCATGTTCCTCGTTTTTTTTCTTCTGGGTTTTCTGTTTATTTGCTCCAAACCACGGATTTCGTTGGTTTCGAGTTGTAATCCTTAATGGGGCTTGGTTTCTCTGTTTCTCTCTGTCTCAGTTCATCTGGGTTTTGGTTGATTTTGATGAAACTCTGAAATTTGGTCGATTTTGACTTGAAATCGGTGCGGATTTGAGATTTTTTGCTGGGTTTCTTCGTTTTCTTCTCGTTTTTCTGTTTTGATTCATTTGCTGAAACTGAGAAACTCCATTGATTCTGAGTTGAACTCTGTTTCTTCTTCTTCTTCTGCGATTGGGGTCTGATTCAAATGCAGAAAAAAACTGAGAAACATGATGGATTTTGAGTTGAAATTAGTGTGGATTTGAGAATTTTTGCTTGGATTCTTCGTTTTCTTCTCGTTTTTTCTGTAATGGGTATTTCTGATTCATTTGCTGAAACTGAGAAACTCCATTGATTCTGAGTTGAACTCTGTTTCTTCTTGTTCTTCTGCGATTGGGTTCTGATTCAAATACAGAAAAAAACTGAGAAACTTGATGGATTTAGAATTGAAATTGGTGTAGATTTGAGAATTTTTTCTGGGTTTCTTCGTTTTCTTCTCGTTTTTCTGTAATGGATATTTCTGATTCAAATGCTGATAAGAGCAGAGAAGCTTGATGGATTTTGAGTAGAAATCCTCTTGGGTTTAATCGAGCAAGTTTTCCCCTCTGTTCTTCAGTTCTGATAAAAGTTCTGCAGATTTTGAATTGAAATCATAGTGGGGGTTGATTCTCAGTTTCAATCCCAGCAAGTTTTCCCAAATCAATGGCCGGAATGTTGCCGGGAGTTGAATGCGCCAGAAGGCGGCGGTTCCACCAGAGCATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGCCGTCGTTCTGTTTGTACACGAGCAACCGTGATTTTCACATCACTTCATCATCATCATCTTCTTCACAGGTATGAATGAATGAATGAAATCTAAGAATTTTTCTGTTTGTTTCCCGGGAAAATTCTGATGAATGTTGAACATAAAATTAAGCAACGGAGCTCATCCAATCAAGCTTACCAGAACGAGAAGCTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTAAGAACTCATAGAAAACCTGAAAATCCAAGGTAATTTCTTCTTAATTTTACTTTATGATCAAATTTGATCTTTCGAACTCTTAAAACTGTTAAGAACGAAGTCGAAACCGTTCAAATGAAAGGAACTAAATTTGTAATTTAACCTAAAATCAACGTTAAAATCGAAAATAATCGTACAGAAAAAAGAGTGGAGAAGGGTCGAAAGAAGAATCAATAACGAAGAAGAGGTTCACTTGGGGGAAGCTGATGAAATGGAAAGCCTCAGAGCAAGAAGAGTGCACCATTTGTTTGGAAGGGTTCAGAGCGGGCGAGCCACTGGTCCATCTTCCATGCGCCCACAAGTTCCACTCTGCGTGCTTGGTGCCTTGGCTCCAAGCCAATGCCCATTGCCCTTGTTGCAGGTTCCCGTTTCCCTCTTAATAACAAATCAATCACCGAGCTTGCAATTTTATATTGTTAGATGTACGAGAGAAGTGAAATAAGAAAGGATTTAGCCTCGACATTGCCGTCATGTGATCTTGTTTTCAAGACTTTGTTTGTTATATTATATAATCGAAGTTCGGTTTGTTGTCTTCAAGTTCACTTGAATC

mRNA sequence

CATGGTCTCTATACACTCTCCGTTTTACTTTTGAGTGACTACATTTCTTGTTGTTGTACGCTCTCTCGCCTTCAATGGCATGGACCCGCTTGTGTTTGTTACCCTCATCACTCCCCAGCTTCTTGCCCTTCTTACTTTATCCTTATTTTAGTTCCTCCCACTCCCACTTCCCTATCTTCGATTTCACCAGATTTTATTCGCTTGTTTCTTCATGTTCTTCATGTTCCTCGTTTTTTTTCTTCTGGGTTTTCTGTTTATTTGCTCCAAACCACGGATTTCGTTGGTTTCGAGTTGTAATCCTTAATGGGGCTTGGTTTCTCTGTTTCTCTCTGTCTCAGTTCATCTGGGTTTTGGTTGATTTTGATGAAACTCTGAAATTTGGTCGATTTTGACTTGAAATCGGTGCGGATTTGAGATTTTTTGCTGGGTTTCTTCGTTTTCTTCTCGTTTTTCTGTTTTGATTCATTTGCTGAAACTGAGAAACTCCATTGATTCTGAGTTGAACTCTGTTTCTTCTTCTTCTTCTGCGATTGGGGTCTGATTCAAATGCAGAAAAAAACTGAGAAACATGATGGATTTTGAGTTGAAATTAGTGTGGATTTGAGAATTTTTGCTTGGATTCTTCGTTTTCTTCTCGTTTTTTCTGTAATGGGTATTTCTGATTCATTTGCTGAAACTGAGAAACTCCATTGATTCTGAGTTGAACTCTGTTTCTTCTTGTTCTTCTGCGATTGGGTTCTGATTCAAATACAGAAAAAAACTGAGAAACTTGATGGATTTAGAATTGAAATTGGTGTAGATTTGAGAATTTTTTCTGGGTTTCTTCGTTTTCTTCTCGTTTTTCTGTAATGGATATTTCTGATTCAAATGCTGATAAGAGCAGAGAAGCTTGATGGATTTTGAGTAGAAATCCTCTTGGGTTTAATCGAGCAAGTTTTCCCCTCTGTTCTTCAGTTCTGATAAAAGTTCTGCAGATTTTGAATTGAAATCATAGTGGGGGTTGATTCTCAGTTTCAATCCCAGCAAGTTTTCCCAAATCAATGGCCGGAATGTTGCCGGGAGTTGAATGCGCCAGAAGGCGGCGGTTCCACCAGAGCATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGCCGTCGTTCTGTTTGTACACGAGCAACCGTGATTTTCACATCACTTCATCATCATCATCTTCTTCACAGCAACGGAGCTCATCCAATCAAGCTTACCAGAACGAGAAGCTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTAAGAACTCATAGAAAACCTGAAAATCCAAGAAAAAAGAGTGGAGAAGGGTCGAAAGAAGAATCAATAACGAAGAAGAGGTTCACTTGGGGGAAGCTGATGAAATGGAAAGCCTCAGAGCAAGAAGAGTGCACCATTTGTTTGGAAGGGTTCAGAGCGGGCGAGCCACTGGTCCATCTTCCATGCGCCCACAAGTTCCACTCTGCGTGCTTGGTGCCTTGGCTCCAAGCCAATGCCCATTGCCCTTGTTGCAGGTTCCCGTTTCCCTCTTAATAACAAATCAATCACCGAGCTTGCAATTTTATATTGTTAGATGTACGAGAGAAGTGAAATAAGAAAGGATTTAGCCTCGACATTGCCGTCATGTGATCTTGTTTTCAAGACTTTGTTTGTTATATTATATAATCGAAGTTCGGTTTGTTGTCTTCAAGTTCACTTGAATC

Coding sequence (CDS)

ATGGCCGGAATGTTGCCGGGAGTTGAATGCGCCAGAAGGCGGCGGTTCCACCAGAGCATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGCCGTCGTTCTGTTTGTACACGAGCAACCGTGATTTTCACATCACTTCATCATCATCATCTTCTTCACAGCAACGGAGCTCATCCAATCAAGCTTACCAGAACGAGAAGCTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTAAGAACTCATAGAAAACCTGAAAATCCAAGAAAAAAGAGTGGAGAAGGGTCGAAAGAAGAATCAATAACGAAGAAGAGGTTCACTTGGGGGAAGCTGATGAAATGGAAAGCCTCAGAGCAAGAAGAGTGCACCATTTGTTTGGAAGGGTTCAGAGCGGGCGAGCCACTGGTCCATCTTCCATGCGCCCACAAGTTCCACTCTGCGTGCTTGGTGCCTTGGCTCCAAGCCAATGCCCATTGCCCTTGTTGCAGGTTCCCGTTTCCCTCTTAA

Protein sequence

MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQQRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKSGEGSKEESITKKRFTWGKLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCRFPFPS
Homology
[Close]
BLAST of Cp4.1LG11g10360 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-10
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1 

Query: 21  TSSDSPSTAAKLGSTRRPSFCLYTSNRDFH----ITSSSSSSSQ------QRSSSNQAYQ 80
           T + S S     GS R P   L   +R F     ++ SS+S S       QR SS  +  
Sbjct: 96  TETQSSSFVNLNGSERLPGAVLLARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSID 155

Query: 81  NEKLGEIAREAKERLDERLRTHRKPENPRKKSGEGSKEESIT---KKRFTWGKLMKWKAS 140
            + + ++A      L      ++KP+        G  +++I    ++ F+  ++     S
Sbjct: 156 GDPIFQLAG-----LQVTYECNKKPQ--------GLTQDAINCLHRQTFSSAEVK----S 215

Query: 141 EQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCR 174
           E  +C+ICLE F  G+ L+ LPC H FHS+CL PWL+A   CPCCR
Sbjct: 216 EMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCR 244

[Close]
BLAST of Cp4.1LG11g10360 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 1 

Query: 127 SEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCRFPFPS 179
           SE  +C +C++ F  G  +  +PC H FH  CL+PWL+ +  CP CRF  P+
Sbjct: 211 SEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]
BLAST of Cp4.1LG11g10360 vs. Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 128 EQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCRFP 176
           E+ ECTIC+E F+  + ++ LPC H FH  C+ PWL+ N  C  CR P
Sbjct: 392 EEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAP 439

[Close]
BLAST of Cp4.1LG11g10360 vs. Swiss-Prot
Match: RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-08
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1 

Query: 131 ECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCR 174
           EC +C E +  GE +  LPC H FH +C+VPWL+ +  CP CR
Sbjct: 230 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272

[Close]
BLAST of Cp4.1LG11g10360 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-08
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 1 

Query: 131 ECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCRFPFPS 179
           +C +CL  F A E ++ +PC H FHS C++PWL     CP CR   P+
Sbjct: 87  KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPT 134

[Close]
BLAST of Cp4.1LG11g10360 vs. TrEMBL
Match: A0A0A0LG47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.2e-72
Identity = 149/197 (75.63%), Postives = 159/197 (80.71%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQSI SSDSP TA K GSTRRPSFCLYTSNRDFH+   SSSSSQ
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLI--SSSSSQ 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKS------GEGSKE------ 120
           QRS +NQAYQN+KLGEIAREAKERLDERLRTHRKPEN RKK+      G+ S+E      
Sbjct: 61  QRSLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEK 120

Query: 121 ---------ESITKKRFTWG-KLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSAC 176
                    E  TKKRF+WG KLMKWKASEQEEC++CLE FR  EPL+HLPCAHKFHS C
Sbjct: 121 KEMKNTKGKEEETKKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTC 180

[Close]
BLAST of Cp4.1LG11g10360 vs. TrEMBL
Match: F6HCI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.5e-53
Identity = 124/193 (64.25%), Postives = 135/193 (69.95%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H   ++SSSS 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENH--HATSSSSM 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKSGE---------------- 120
           QRS  NQAY +EKLG +AREAKERLDERLRT RK E  R KS E                
Sbjct: 61  QRSVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQ 120

Query: 121 ----GSKEESITKKRFTWGKLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLV 174
               GSK      KRF+WGKL  WKAS+Q EC ICLEGF+AGE LVHLPCAH+FHS CL+
Sbjct: 121 TEVFGSKRSG--SKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLM 180

[Close]
BLAST of Cp4.1LG11g10360 vs. TrEMBL
Match: A0A061GN77_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 124/191 (64.92%), Postives = 137/191 (71.73%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQS  +SDSPST   +G TRR SFCLYTSN   H T  SS SSQ
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSN---HETHHSSVSSQ 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKS--------------GEGS 120
           QRS  NQA Q+EKLGE+AREAKERLDERLR+ RK E  R+ S              GE  
Sbjct: 61  QRSILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKRQNSKESLRCVDGRSMVQGEFH 120

Query: 121 KEESITKK----RFTWGKLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPW 174
           KE    KK    RF+W KL  WKAS+QEEC ICLE F+AGE LVHLPCAH+FHS CL+PW
Sbjct: 121 KEVFGPKKSGTKRFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPW 180

[Close]
BLAST of Cp4.1LG11g10360 vs. TrEMBL
Match: A5ASH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.1e-52
Identity = 123/193 (63.73%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H   ++SSSS 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENH--HATSSSSM 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKSGE---------------- 120
           QRS  NQAY +EKLG +AREAKERLDERLRT RK E  R KS E                
Sbjct: 61  QRSVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQ 120

Query: 121 ----GSKEESITKKRFTWGKLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLV 174
               GSK      KRF+WGKL  WKAS+Q EC ICLEGF+AGE LVHLPCAH+FHS CL+
Sbjct: 121 TEVFGSKRSG--SKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLM 180

[Close]
BLAST of Cp4.1LG11g10360 vs. TrEMBL
Match: A0A0D2PA85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.6e-48
Identity = 113/191 (59.16%), Postives = 130/191 (68.06%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQS  SSDS S A  +G TRR SFCLYTSN + H    SS SSQ
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAV-IGLTRRSSFCLYTSNNETH---HSSVSSQ 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKSGEGSK------------- 120
           QRS   Q++Q++KLG +AREAKERLDERLR+ RK E  R  + EG K             
Sbjct: 61  QRSILTQSFQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELR 120

Query: 121 -----EESITKKRFTWGKLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPW 174
                 +    KRF+W KL  WKAS+Q+EC ICLE F+  E LVH PCAH+FHS CLVPW
Sbjct: 121 TEVFGSKKSASKRFSWAKL-NWKASDQDECAICLERFKVDESLVHPPCAHRFHSRCLVPW 180

[Close]
BLAST of Cp4.1LG11g10360 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-35
Identity = 89/191 (46.60%), Postives = 112/191 (58.64%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQS---ITSSDSPSTAAKLGS--TRRPSFCLYTSNRDFHITSSS 60
           MAGMLPGVECARRRRFH     I SS++ S AA  G   TRRPSF LYT+N + H    S
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SSSSQQRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKSGE----------G 120
            S    R+ S     +EKL   A+EAK+RL++RLR   +     K  G           G
Sbjct: 61  FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTRQNGKDKGNKLEQGKGKPLG 120

Query: 121 SKEESITKKRFTWGKLMKW---KASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPW 174
                +   + + G+LM+W   +  EQ++C ICL+ F+ GE LVHLPCAHKFHS CL+PW
Sbjct: 121 DLPTEVVGLKKSRGRLMEWFKRRVREQQDCAICLDRFKKGETLVHLPCAHKFHSICLLPW 180

[Close]
BLAST of Cp4.1LG11g10360 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-12
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 125 KASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCRFPFP 178
           K SE  +C+ICL+ F  G     +PC HKFH  C+VPWL+ ++ CP CR+  P
Sbjct: 234 KISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCRYELP 286

[Close]
BLAST of Cp4.1LG11g10360 vs. TAIR10
Match: AT5G56340.1 (AT5G56340.1 RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-11
Identity = 30/90 (33.33%), Postives = 47/90 (52.22%), Query Frame = 1 

Query: 89  LRTHRKPENPRKKSGEGSKEESITKKRFTWGKLMKWKASEQEECTICLEGFRAGEPLVHL 148
           L  H    +P ++    +++E++         L   K  E  +C++CL+ F  G     +
Sbjct: 223 LLQHLAENDPNRQGTPPARKEAVEA-------LPTVKIMEPLQCSVCLDDFEKGTEAKEM 282

Query: 149 PCAHKFHSACLVPWLQANAHCPCCRFPFPS 179
           PC HKFH  C+VPWL+ ++ CP CRF  PS
Sbjct: 283 PCKHKFHVRCIVPWLELHSSCPVCRFELPS 305

[Close]
BLAST of Cp4.1LG11g10360 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1 

Query: 21  TSSDSPSTAAKLGSTRRPSFCLYTSNRDFH----ITSSSSSSSQ------QRSSSNQAYQ 80
           T + S S     GS R P   L   +R F     ++ SS+S S       QR SS  +  
Sbjct: 96  TETQSSSFVNLNGSERLPGAVLLARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSID 155

Query: 81  NEKLGEIAREAKERLDERLRTHRKPENPRKKSGEGSKEESIT---KKRFTWGKLMKWKAS 140
            + + ++A      L      ++KP+        G  +++I    ++ F+  ++     S
Sbjct: 156 GDPIFQLAG-----LQVTYECNKKPQ--------GLTQDAINCLHRQTFSSAEVK----S 215

Query: 141 EQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCR 174
           E  +C+ICLE F  G+ L+ LPC H FHS+CL PWL+A   CPCCR
Sbjct: 216 EMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCR 244

[Close]
BLAST of Cp4.1LG11g10360 vs. TAIR10
Match: AT1G18760.1 (AT1G18760.1 Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1 

Query: 120 KLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPWLQANAHCPCCRFPFP 178
           K+ K   S  E CTICLE F  G  ++ LPC H+F   C++ W + N  CP CRF  P
Sbjct: 163 KIYKKTTSSTERCTICLEEFNDGTKVMTLPCGHEFDDECVLTWFETNHDCPLCRFKLP 220

[Close]
BLAST of Cp4.1LG11g10360 vs. NCBI nr
Match: gi|449442999|ref|XP_004139268.1| (PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 1.7e-72
Identity = 149/197 (75.63%), Postives = 159/197 (80.71%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQSI SSDSP TA K GSTRRPSFCLYTSNRDFH+   SSSSSQ
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLI--SSSSSQ 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKS------GEGSKE------ 120
           QRS +NQAYQN+KLGEIAREAKERLDERLRTHRKPEN RKK+      G+ S+E      
Sbjct: 61  QRSLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEK 120

Query: 121 ---------ESITKKRFTWG-KLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSAC 176
                    E  TKKRF+WG KLMKWKASEQEEC++CLE FR  EPL+HLPCAHKFHS C
Sbjct: 121 KEMKNTKGKEEETKKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTC 180

[Close]
BLAST of Cp4.1LG11g10360 vs. NCBI nr
Match: gi|659070794|ref|XP_008456709.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 3.5e-70
Identity = 142/196 (72.45%), Postives = 157/196 (80.10%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFH SI SSDSPSTAAK GSTRRPSFCLYTSNRDFH+ SSSSS  Q
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSS--Q 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKSGEGSK------------- 120
           QRS +N+A+QNEKLGEIAREAKERLDERLRTHRKPEN R K+ +  +             
Sbjct: 61  QRSLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSRSKNSKNEEVKWKESREKNNGE 120

Query: 121 ---------EESITKKRFTWG-KLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSA 174
                    +E  T+KRF+WG KLMKWKASEQ+EC++CLE FR+GEPL+HLPCAHKFHS 
Sbjct: 121 RKEMRSTKGKEEETRKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHST 180

[Close]
BLAST of Cp4.1LG11g10360 vs. NCBI nr
Match: gi|659070796|ref|XP_008456717.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 144/197 (73.10%), Postives = 158/197 (80.20%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFH SI SSDSPSTAAK GSTRRPSFCLYTSNRDFH+ SSSSS  Q
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSS--Q 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRK-------------------- 120
           QRS +N+A+QNEKLGEIAREAKERLDERLRTHRKPEN  K                    
Sbjct: 61  QRSLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSSKNSKNEEVKWKESREKNNGER 120

Query: 121 ---KSGEGSKEESITKKRFTWG-KLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHS 174
              +S +G +EE  T+KRF+WG KLMKWKASEQ+EC++CLE FR+GEPL+HLPCAHKFHS
Sbjct: 121 KEMRSTKGKEEE--TRKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHS 180

[Close]
BLAST of Cp4.1LG11g10360 vs. NCBI nr
Match: gi|225463022|ref|XP_002266038.1| (PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 5.0e-53
Identity = 124/193 (64.25%), Postives = 135/193 (69.95%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H   ++SSSS 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENH--HATSSSSM 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKSGE---------------- 120
           QRS  NQAY +EKLG +AREAKERLDERLRT RK E  R KS E                
Sbjct: 61  QRSVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQ 120

Query: 121 ----GSKEESITKKRFTWGKLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLV 174
               GSK      KRF+WGKL  WKAS+Q EC ICLEGF+AGE LVHLPCAH+FHS CL+
Sbjct: 121 TEVFGSKRSG--SKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLM 180

[Close]
BLAST of Cp4.1LG11g10360 vs. NCBI nr
Match: gi|590579073|ref|XP_007013686.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 213.8 bits (543), Expect = 2.5e-52
Identity = 124/191 (64.92%), Postives = 137/191 (71.73%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60
           MAGMLPGVECARRRRFHQS  +SDSPST   +G TRR SFCLYTSN   H T  SS SSQ
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSN---HETHHSSVSSQ 60

Query: 61  QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPRKKS--------------GEGS 120
           QRS  NQA Q+EKLGE+AREAKERLDERLR+ RK E  R+ S              GE  
Sbjct: 61  QRSILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKRQNSKESLRCVDGRSMVQGEFH 120

Query: 121 KEESITKK----RFTWGKLMKWKASEQEECTICLEGFRAGEPLVHLPCAHKFHSACLVPW 174
           KE    KK    RF+W KL  WKAS+QEEC ICLE F+AGE LVHLPCAH+FHS CL+PW
Sbjct: 121 KEVFGPKKSGTKRFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPW 180

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g10360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHY1A_ARATH9.0e-1031.93Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2... [more]
RNG1L_ARATH1.2e-0942.31E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
YKW3_SCHPO2.6e-0947.92Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra... [more]
RN126_MOUSE4.9e-0848.84E3 ubiquitin-protein ligase RNF126 OS=Mus musculus GN=Rnf126 PE=1 SV=1[more]
RN181_MOUSE6.4e-0843.75E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1[more]
BLAST of Cp4.1LG11g10360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG47_CUCSA1.2e-7275.63Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1[more]
F6HCI8_VITVI3.5e-5364.25Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=... [more]
A0A061GN77_THECC1.7e-5264.92RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1[more]
A5ASH9_VITVI5.1e-5263.73Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1[more]
A0A0D2PA85_GOSRA2.6e-4859.16Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1[more]
BLAST of Cp4.1LG11g10360 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15580.12.9e-3546.60 RING/U-box superfamily protein[more]
AT4G26400.27.8e-1247.17 RING/U-box superfamily protein[more]
AT5G56340.13.9e-1133.33 RING/U-box superfamily protein[more]
AT1G49850.15.1e-1131.93 RING/U-box superfamily protein[more]
AT1G18760.15.1e-1144.83 Zinc finger, C3HC4 type (RING finger) family protein[more]
BLAST of Cp4.1LG11g10360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442999|ref|XP_004139268.1|1.7e-7275.63PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus][more]
gi|659070794|ref|XP_008456709.1|3.5e-7072.45PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo][more]
gi|659070796|ref|XP_008456717.1|1.3e-6973.10PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo][more]
gi|225463022|ref|XP_002266038.1|5.0e-5364.25PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera][more]
gi|590579073|ref|XP_007013686.1|2.5e-5264.92RING/U-box superfamily protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g10360.1Cp4.1LG11g10360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 131..173
score: 6.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 132..172
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 132..173
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 127..176
score: 1.7
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 74..173
score: 2.3
NoneNo IPR availablePANTHERPTHR22763:SF49SUBFAMILY NOT NAMEDcoord: 74..173
score: 2.3
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 117..176
score: 1.33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g10360Cucsa.132720Cucumber (Gy14) v1cgycpeB0351
Cp4.1LG11g10360CmaCh10G004940Cucurbita maxima (Rimu)cmacpeB074
Cp4.1LG11g10360CmaCh12G011620Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g10360CmoCh11G004920Cucurbita moschata (Rifu)cmocpeB088
Cp4.1LG11g10360CmoCh12G011850Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g10360Cla013602Watermelon (97103) v1cpewmB113
Cp4.1LG11g10360Cla018695Watermelon (97103) v1cpewmB125
Cp4.1LG11g10360Csa1G265120Cucumber (Chinese Long) v2cpecuB093
Cp4.1LG11g10360Csa2G009360Cucumber (Chinese Long) v2cpecuB103
Cp4.1LG11g10360MELO3C010264Melon (DHL92) v3.5.1cpemeB087
Cp4.1LG11g10360MELO3C004441Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g10360ClCG02G017240Watermelon (Charleston Gray)cpewcgB104
Cp4.1LG11g10360ClCG06G012030Watermelon (Charleston Gray)cpewcgB117
Cp4.1LG11g10360CSPI02G02370Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g10360CSPI01G17250Wild cucumber (PI 183967)cpecpiB089
Cp4.1LG11g10360Lsi11G003860Bottle gourd (USVL1VR-Ls)cpelsiB074
Cp4.1LG11g10360MELO3C004441.2Melon (DHL92) v3.6.1cpemedB123
Cp4.1LG11g10360MELO3C010264.2Melon (DHL92) v3.6.1cpemedB110
Cp4.1LG11g10360CsaV3_1G028490Cucumber (Chinese Long) v3cpecucB0101
Cp4.1LG11g10360CsaV3_2G003550Cucumber (Chinese Long) v3cpecucB0114
Cp4.1LG11g10360Bhi06G001575Wax gourdcpewgoB0114
Cp4.1LG11g10360CsGy2G002450Cucumber (Gy14) v2cgybcpeB168
Cp4.1LG11g10360CsGy1G017460Cucumber (Gy14) v2cgybcpeB029
Cp4.1LG11g10360Carg17455Silver-seed gourdcarcpeB0357
Cp4.1LG11g10360Carg23020Silver-seed gourdcarcpeB1494
Cp4.1LG11g10360Carg09968Silver-seed gourdcarcpeB0181
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g10360Cp4.1LG04g08890Cucurbita pepo (Zucchini)cpecpeB130
Cp4.1LG11g10360Cp4.1LG07g11020Cucurbita pepo (Zucchini)cpecpeB147
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g10360Cucurbita pepo (Zucchini)cpecpeB113
Cp4.1LG11g10360Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g10360Cucurbita moschata (Rifu)cmocpeB721