Cla013602 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013602
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RING/U-box domain-containing protein (AHRD V1 **-- F4IIH8_ARATH)
Location	Chr2 : 27665914 .. 27666307 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAATGTTGCCTGGAGTTGAATGCGCTAGACGGCGGCGGTTCCACCAGAGTATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATCAGGATCTACAAGAAGACCATCCTTCTGTTTGTACACAAGCAACCGTGATGTTCATCTCATTTCATCATCTTCTTCACAGGTATATTATATTATGAAATAAATTCTAAAAAATTCCATCTATGTTCTTCGAATTATTTCCTGGGAAAATCTGATGAATCGTTTTGTAATTATAAATTAAGCAACGGAGTTCGTCGAATCAAGCTTACGAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAAAGGTTGAGGACTCACAGAAAACCTGAAAATCCAAGGTGA

mRNA sequence

ATGGCCGGAATGTTGCCTGGAGTTGAATGCGCTAGACGGCGGCGGTTCCACCAGAGTATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATCAGGATCTACAAGAAGACCATCCTTCTGTTTGTACACAAGCAACCGTGATGTTCATCTCATTTCATCATCTTCTTCACAGCAACGGAGTTCGTCGAATCAAGCTTACGAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAAAGGTTGAGGACTCACAGAAAACCTGAAAATCCAAGGTGA

Coding sequence (CDS)

ATGGCCGGAATGTTGCCTGGAGTTGAATGCGCTAGACGGCGGCGGTTCCACCAGAGTATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATCAGGATCTACAAGAAGACCATCCTTCTGTTTGTACACAAGCAACCGTGATGTTCATCTCATTTCATCATCTTCTTCACAGCAACGGAGTTCGTCGAATCAAGCTTACGAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAAAGGTTGAGGACTCACAGAAAACCTGAAAATCCAAGGTGA

Protein sequence

MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQRSSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR

Homology

[Close]

BLAST of Cla013602 vs. TrEMBL
Match: A0A0A0LG47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.4e-42
Identity = 88/97 (90.72%), Postives = 91/97 (93.81%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSI SSDSP TA KSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S +NQAY+N+KLGEIAREAKERLDERLRTHRKPEN R
Sbjct: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Cla013602 vs. TrEMBL
Match: F6HCI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.6e-28
Identity = 71/97 (73.20%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S  NQAY +EKLG +AREAKERLDERLRT RK E  R
Sbjct: 61 SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTR 96

[Close]

BLAST of Cla013602 vs. TrEMBL
Match: A5ASH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.6e-28
Identity = 71/97 (73.20%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S  NQAY +EKLG +AREAKERLDERLRT RK E  R
Sbjct: 61 SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTR 96

[Close]

BLAST of Cla013602 vs. TrEMBL
Match: A0A061GN77_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.2e-27
Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS  +SDSPST    G TRR SFCLYTSN + H  SS SSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSNHETHH-SSVSSQQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S  NQA ++EKLGE+AREAKERLDERLR+ RK E  R
Sbjct: 61 SILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKR 95

[Close]

BLAST of Cla013602 vs. TrEMBL
Match: A0A0B0NAG0_GOSAR (Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-25
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS  SSDS S A   G TRR SFCLYTSN + H  SS SSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGSSDSSSVAV-IGLTRRSSFCLYTSNNETHH-SSVSSQQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S   Q Y+++KLG +AREAKERLDERLR+ RK E  R
Sbjct: 61 SILTQTYQDDKLGGVAREAKERLDERLRSQRKSEPKR 95

[Close]

BLAST of Cla013602 vs. NCBI nr
Match: gi|449442999|ref|XP_004139268.1| (PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 6.3e-42
Identity = 88/97 (90.72%), Postives = 91/97 (93.81%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSI SSDSP TA KSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S +NQAY+N+KLGEIAREAKERLDERLRTHRKPEN R
Sbjct: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Cla013602 vs. NCBI nr
Match: gi|659070794|ref|XP_008456709.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 8.3e-42
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SI SSDSPSTAAKSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S +N+A++NEKLGEIAREAKERLDERLRTHRKPEN R
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Cla013602 vs. NCBI nr
Match: gi|659070796|ref|XP_008456717.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-41
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SI SSDSPSTAAKSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPEN 96
          S +N+A++NEKLGEIAREAKERLDERLRTHRKPEN
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPEN 95

[Close]

BLAST of Cla013602 vs. NCBI nr
Match: gi|296084575|emb|CBI25596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 132.1 bits (331), Expect = 5.2e-28
Identity = 71/97 (73.20%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S  NQAY +EKLG +AREAKERLDERLRT RK E  R
Sbjct: 61 SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTR 96

[Close]

BLAST of Cla013602 vs. NCBI nr
Match: gi|147794470|emb|CAN73727.1| (hypothetical protein VITISV_034074 [Vitis vinifera])

HSP 1 Score: 132.1 bits (331), Expect = 5.2e-28
Identity = 71/97 (73.20%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61 SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPR 98
          S  NQAY +EKLG +AREAKERLDERLRT RK E  R
Sbjct: 61 SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTR 96

The following BLAST results are available for this feature:

BLAST of Cla013602 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG47_CUCSA	4.4e-42	90.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1	[more]
F6HCI8_VITVI	3.6e-28	73.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=...	[more]
A5ASH9_VITVI	3.6e-28	73.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1	[more]
A0A061GN77_THECC	5.2e-27	73.20	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1	[more]
A0A0B0NAG0_GOSAR	2.9e-25	70.10	Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1	[more]

BLAST of Cla013602 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442999\|ref\|XP_004139268.1\|	6.3e-42	90.72	PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus]	[more]
gi\|659070794\|ref\|XP_008456709.1\|	8.3e-42	90.72	PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo]	[more]
gi\|659070796\|ref\|XP_008456717.1\|	2.4e-41	91.58	PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo]	[more]
gi\|296084575\|emb\|CBI25596.3\|	5.2e-28	73.20	unnamed protein product [Vitis vinifera]	[more]
gi\|147794470\|emb\|CAN73727.1\|	5.2e-28	73.20	hypothetical protein VITISV_034074 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013602	Cla013602.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013602	Cla97C02G042930	Watermelon (97103) v2	wmwmbB316
Cla013602	Csa2G009360	Cucumber (Chinese Long) v2	cuwmB147
Cla013602	MELO3C004441	Melon (DHL92) v3.5.1	mewmB418
Cla013602	ClCG02G017240	Watermelon (Charleston Gray)	wcgwmB197
Cla013602	CSPI02G02370	Wild cucumber (PI 183967)	cpiwmB149
Cla013602	Cucsa.132720	Cucumber (Gy14) v1	cgywmB223
Cla013602	CmaCh12G011620	Cucurbita maxima (Rimu)	cmawmB170
Cla013602	CmoCh12G011850	Cucurbita moschata (Rifu)	cmowmB156
Cla013602	Lsi11G003860	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla013602	Cp4.1LG11g10360	Cucurbita pepo (Zucchini)	cpewmB113
Cla013602	Cp4.1LG07g11020	Cucurbita pepo (Zucchini)	cpewmB809
Cla013602	CsGy2G002450	Cucumber (Gy14) v2	cgybwmB140
Cla013602	MELO3C004441.2	Melon (DHL92) v3.6.1	medwmB407
Cla013602	Carg17455	Silver-seed gourd	carwmB0242
Cla013602	Carg23020	Silver-seed gourd	carwmB1071
Cla013602	CsaV3_2G003550	Cucumber (Chinese Long) v3	cucwmB159
Cla013602	Bhi06G001575	Wax gourd	wgowmB133

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013602	Cucurbita maxima (Rimu)	cmawmB764
Cla013602	Cucurbita moschata (Rifu)	cmowmB757