ClCG02G017240 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G017240
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RING/U-box superfamily protein LENGTH=196
Location	CG_Chr02 : 31779639 .. 31782992 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAACTCGGTTGATTTTGAGTTGAAATTGGTGTGGATTTGAGAATTTCGTAGCTGGGTTTCTTCGTTTTCTTCTCGTTTTTCTGTAATGGGTGTTCGTATTTCTGATGCATTTATTGGAACTGATAAGTTCCATTGTTTCTGAATTGAAATCCTCTTGTGTTTAATCCAGCTAGTTTTCACCATTTCTGAAAATTTGAAACTCGGTTGATTTTGAGTTGAAATTAGTGTGGATTTGAGATTTTTTTCTCATTTTTCTGAAATGGGTATTTCTGATTCGTTTGCTAAAACTGAAAAACTCCATTGATTCTGAGTTGAAATCGGTTTTTTTCTGTGTAATTTAATAGTTTTTGAGTTGAAATCCTCTTGGGTTTAATCCAACTAGTTTTCACCGTTTCACTCTCGACTGCCTCTGCCTCTGTTTCTATTCGGATTACTCTGCAGATTTTTCAGTTCGAATCGTCGTGGGATTGATTCTCAGTTCTGTTTCCACCATTTTTTTCCAAATGAGTTTCTGATAAATTTACTAATATTTCCGATTTTAATCTAACCAATTTCGTTGAACGATGGCCGGAATGTTGCCTGGAGTTGAATGCGCTAGACGGCGGCGGTTCCACCAGAGTATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATCAGGATCTACAAGAAGACCATCCTTCTGTTTGTACACAAGCAACCGTGATGTTCATCTCATTTCATCATCTTCTTCACAGGTATATTATATTATGAAATAAATTCTAAAAAATTCCATCTATGTTCTTCGAATTATTTCCTGGGAAAATCTGATGAATCGTTTTGTAATTATAAATTAAGCAACGGAGTTCGTCGAATCAAGCTTACGAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAAAGGTTGAGGACTCACAGAAAACCTGAAAATCCAAGGTGATTTCTTCGTGAACCATCTTATTTCCTTGACAATTTTATTCATTGTTCTTCAAATCTATTTTCAATCTTTTTTTAACTTTTCTATAAAAAAAAATAATAATAATAAAAAAATACCGTTTGTTAATAGAATTCACGAATCAGGAAATTTTAACAGATTATAGGTGCAATTGAAAAGTTTAAAATATTGAGGATCAAATTGAAAGTTGACTAAAAGATTACGGACTTGAAAATATGATTTTGGTTCTGGTCATGAAATATGTTGGATTTTAGTCTTTCAGAAATGTCAAATTTAGGTTGTGTTTTGAAATATTTTTCAAATCTTGAAAAAAATATAATTGTTTTGCCACCATTTAAAGTTGATTTTAAAAGTTAATAGGTATTTTTATTTTACACACTTTTAAAAAAAAGTGTTTAAATGAAAATAAATTTTTTAAAAATATTTATTTTTTAAGTCAATTTAGATGTACGGTTAGTCTTTCAAATTTTAAATTTGAATGAAATTAGTTAAATAATTATAATAATTTTTATTATATAAAATACATTTTACAAATTTATAGATAAAAAACTCATAGATAAAATTCTTCTCTCTTAGAAAAGCCAATAAATTAGAAGTAGAACTAAGTTTAAGATGGACTAAAAGTATGTTGACTAAAATTGAATATTTAAAAATAGATGAATTAAAATTGAATAAATCTTAAAATATAGGACAAAAATGATATTTTAGTTATATATAATAACATTATTGTTATTATTAGGACAATTATTTAAAATTGTAAAATTGCTGGAAATATTTTTAAATATAGTAAAATGTCACTATCTGTCTATTGTTTATCACTCGATGATAGACCGTGGTATTTTTTACTATATTTATAAATAAGTGGGTTGATTTTAATATATTCGAAAATAATCCTTATTATTATCTTTTGATTCTTTATTTTGTACAAAAGAAAATTGTTTTGGGTTTTGTTATTAGAAGAGTTTACATATCATCAGTTGAAGAAAAATATGAAGAAATTAATTAGAAATTGATTACTTGATAATCCACTCTTAATCACATTATAACAAAATTGAAAGAAAAAGATTGTGACATGATAAACTGTTGTTAAATAATTAATAAATTGCACTAAAATAGTTAAAATGAGCTTAGTTTGGCGGTGATTAACATAAAAATTTATGAGAGTACACTTAATTATTTTTGTTTTAATTAAATCACCACCCACCTACCTCTACTGGGAAAGGGTGAAATATGTTTTGTACTTCTATTGTATTTTAGTCCTAAAATTTCTAAATTTTTCATTTTAGTCCTTTCAGCTTCAGCATTAAATGAATGCTTTGTTTTAAATTTTCATTTCTATACTTTTTTGACTTTATGGTTGAAAGAACCATTTAATCATTGCATTCGTTTCCATTAATTGTCGACCAATTTTATTTTTTTAAAAAAATCATCGAACCTAACTCTAAATATATGACAAAACAAAAAACAAAATGAAACTTCTTTTTATGATTAAAAAAACATACAACAATAATAATTTTTAAAACTAGAAGTTTAAGCGCTGACATTGATCAAAGTTAAAAGAACAAAAACAAAAGTATGATTCAATTTTAAGCCCAGTTTGACAATTATACTTTTTTTTTCATTAAGTTTATTTTCTAACAATTTTTTTATCATAATTTTTCATCTTTTCTAATTAAAAACACTTGAATTCTTATTTAAATTTAATATACCAAGCAACATTTTGAAAAACTCTACTGAAAAAATAGGTAACAAAACAAAGAAAATCAATATGTAAAAATAATGTCTATAAGCTTAATTTTAAAAAAAAAACCAAAAGTCAAATAGTTATCGATAATGAGAGGAGATGATTCGTGAGATTATTCTCCTAAATGATAAGAGATAATTAAATTCAAACTCTTAAAGCTATAAAAACAAAGTCTAAACTACGTTCATGCTCCATAAACCAATTAAATTTGTAATTTAGCCTAAAATCAACATAAAACATCAAAATCTTTATCAATTCCAACAAATTCTTCTTTTTGGGTAAAATTATACAGGAGGAAGAGTGGGAATGAAGAAGTAGGGTGGAAGGAATCATCAGAAAAAAATGGTAAAAAAAAAGAAAAAGCAAAGGGAAAAGAAGAAACAACAACAAAGAAAAGATTGAGTTGGGGGAAGCTAATGAAATGGAAAGCCTTAGAGCAAGAAGAGTGCAGCGTTTGTCTAGAACGGTTCAGAGTGGGCGAGCCGCTGGTCCATCTTCCATGCGCCCACAAGTTCCATTCCACCTGTTTGGTCCCTTGGCTCCAAGCCAATGCCCATTGCCCTTGCTGCAGGTTCCCTATTCCCTCTCGTTGACAAACCTAACTCTTCTTCTTTGTATCAAATCAAGCCACTTTTC

mRNA sequence

TGAAACTCGGTTGATTTTGAGTTGAAATTGGTGTGGATTTGAGAATTTCGTAGCTGGGTTTCTTCGTTTTCTTCTCGTTTTTCTGTAATGGGTGTTCGTATTTCTGATGCATTTATTGGAACTGATAAGTTCCATTGTTTCTGAATTGAAATCCTCTTGTGTTTAATCCAGCTAGTTTTCACCATTTCTGAAAATTTGAAACTCGGTTGATTTTGAGTTGAAATTAGTGTGGATTTGAGATTTTTTTCTCATTTTTCTGAAATGGGTATTTCTGATTCGTTTGCTAAAACTGAAAAACTCCATTGATTCTGAGTTGAAATCGGTTTTTTTCTGTGTAATTTAATAGTTTTTGAGTTGAAATCCTCTTGGGTTTAATCCAACTAGTTTTCACCGTTTCACTCTCGACTGCCTCTGCCTCTGTTTCTATTCGGATTACTCTGCAGATTTTTCAGTTCGAATCGTCGTGGGATTGATTCTCAGTTCTGTTTCCACCATTTTTTTCCAAATGAGTTTCTGATAAATTTACTAATATTTCCGATTTTAATCTAACCAATTTCGTTGAACGATGGCCGGAATGTTGCCTGGAGTTGAATGCGCTAGACGGCGGCGGTTCCACCAGAGTATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATCAGGATCTACAAGAAGACCATCCTTCTGTTTGTACACAAGCAACCGTGATGTTCATCTCATTTCATCATCTTCTTCACAGCAACGGAGTTCGTCGAATCAAGCTTACGAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAAAGGTTGAGGACTCACAGAAAACCTGAAAATCCAAGGAGGAAGAGTGGGAATGAAGAAGTAGGGTGGAAGGAATCATCAGAAAAAAATGGTAAAAAAAAAGAAAAAGCAAAGGGAAAAGAAGAAACAACAACAAAGAAAAGATTGAGTTGGGGGAAGCTAATGAAATGGAAAGCCTTAGAGCAAGAAGAGTGCAGCGTTTGTCTAGAACGGTTCAGAGTGGGCGAGCCGCTGGTCCATCTTCCATGCGCCCACAAGTTCCATTCCACCTGTTTGGTCCCTTGGCTCCAAGCCAATGCCCATTGCCCTTGCTGCAGGTTCCCTATTCCCTCTCGTTGACAAACCTAACTCTTCTTCTTTGTATCAAATCAAGCCACTTTTC

Coding sequence (CDS)

ATGGCCGGAATGTTGCCTGGAGTTGAATGCGCTAGACGGCGGCGGTTCCACCAGAGTATAACCTCATCGGACTCGCCGTCCACGGCGGCGAAATCAGGATCTACAAGAAGACCATCCTTCTGTTTGTACACAAGCAACCGTGATGTTCATCTCATTTCATCATCTTCTTCACAGCAACGGAGTTCGTCGAATCAAGCTTACGAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAAAGGTTGAGGACTCACAGAAAACCTGAAAATCCAAGGAGGAAGAGTGGGAATGAAGAAGTAGGGTGGAAGGAATCATCAGAAAAAAATGGTAAAAAAAAAGAAAAAGCAAAGGGAAAAGAAGAAACAACAACAAAGAAAAGATTGAGTTGGGGGAAGCTAATGAAATGGAAAGCCTTAGAGCAAGAAGAGTGCAGCGTTTGTCTAGAACGGTTCAGAGTGGGCGAGCCGCTGGTCCATCTTCCATGCGCCCACAAGTTCCATTCCACCTGTTTGGTCCCTTGGCTCCAAGCCAATGCCCATTGCCCTTGCTGCAGGTTCCCTATTCCCTCTCGTTGA

Protein sequence

MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQRSSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKESSEKNGKKKEKAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCRFPIPSR

Homology

[Close]

BLAST of ClCG02G017240 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-12
Identity = 48/156 (30.77%), Postives = 72/156 (46.15%), Query Frame = 1


Query: 53  SSSSSQQRSSSNQAYENEKLGEIAREAKERLDERLR---------THRKPENPRRKSGNE 112
           S+ +  Q SS      +E+L      A++RL ERLR         ++R   + +R+S   
Sbjct: 93  STDTETQSSSFVNLNGSERLPGAVLLARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFH 152

Query: 113 EV---------GWKESSEKNGKKKEKAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLE 172
            +         G + + E N K +   +       ++  S  ++      E  +CS+CLE
Sbjct: 153 SIDGDPIFQLAGLQVTYECNKKPQGLTQDAINCLHRQTFSSAEVKS----EMRDCSICLE 212

Query: 173 RFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCR 191
            F  G+ L+ LPC H FHS+CL PWL+A   CPCCR
Sbjct: 213 SFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCR 244

[Close]

BLAST of ClCG02G017240 vs. Swiss-Prot
Match: RN103_RAT (E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-10
Identity = 42/147 (28.57%), Postives = 61/147 (41.50%), Query Frame = 1


Query: 52  ISSSSSQQRSSSNQAYENEKLGEIA---REAKERLDERLRTHRKPENPRRKSGNEEVGWK 111
           + + S ++ S S+Q  EN+   +       +K+  +++   H  P    R          
Sbjct: 519 LGAQSEEEMSESSQDTENDSDSDNTDTFSSSKDVFEDKQNVHSSPGRTSRCDTEACSCAN 578

Query: 112 ESSEKNGKKKEKAKGKEETTTKKRLSWGKLMKWKA--LEQEECSVCLERFRVGEPLVHLP 171
           +      ++K ++ G   T       W   + W A  L   EC VCLE F  G  L+ LP
Sbjct: 579 KCVSSPCERKRRSYGSHNTKEDMEPDW---LTWPAGTLHCTECVVCLENFENGCLLMGLP 638

Query: 172 CAHKFHSTCLVPWLQANAH-CPCCRFP 193
           C H FH  C+V WL    H CP CR+P
Sbjct: 639 CGHVFHQNCIVMWLAGGRHCCPVCRWP 662

[Close]

BLAST of ClCG02G017240 vs. Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.6e-10
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1


Query: 145 EQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCRFPI 194
           E+ EC++C+E F++ + ++ LPC H FH  C+ PWL+ N  C  CR P+
Sbjct: 392 EEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440

[Close]

BLAST of ClCG02G017240 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 1


Query: 145 EQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCRFPIPS 196
           E  +C+VC++ F  G  +  +PC H FH  CL+PWL+ +  CP CRF +P+
Sbjct: 212 EMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]

BLAST of ClCG02G017240 vs. Swiss-Prot
Match: ZNRF3_XENTR (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 109 ESSEKNGKKKEKAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCA 168
           ++ EK   +K KAKGK      +  S G L    +    +C++CLE++  GE L  +PC 
Sbjct: 230 QALEKMETRKFKAKGK----VPREGSCGGLDTLSSSSTSDCAICLEKYIDGEELRVIPCT 289

Query: 169 HKFHSTCLVPWLQANAHCPCCRFPI 194
           H+FH  C+ PWL  N  CP CR  I
Sbjct: 290 HRFHKRCVDPWLLQNHTCPHCRHNI 310

[Close]

BLAST of ClCG02G017240 vs. TrEMBL
Match: A0A0A0LG47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 4.4e-89
Identity = 168/197 (85.28%), Postives = 176/197 (89.34%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQSI SSDSP TA KSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKESSEK-NGKKKE 120
           S +NQAY+N+KLGEIAREAKERLDERLRTHRKPEN R+K+ NEEV  KES EK NG+KKE
Sbjct: 61  SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEKKE 120

Query: 121 --KAKGKEETTTKKRLSWG-KLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCL 180
               KGKEE  TKKR SWG KLMKWKA EQEECSVCLERFR+ EPL+HLPCAHKFHSTCL
Sbjct: 121 MKNTKGKEE-ETKKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTCL 180

Query: 181 VPWLQANAHCPCCRFPI 194
           VPWLQANAHCPCCRFPI
Sbjct: 181 VPWLQANAHCPCCRFPI 196

[Close]

BLAST of ClCG02G017240 vs. TrEMBL
Match: A0A061GN77_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 122/196 (62.24%), Postives = 147/196 (75.00%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQS  +SDSPST    G TRR SFCLYTSN + H  SS SSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSNHETHH-SSVSSQQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKES-SEKNGKKKE 120
           S  NQA ++EKLGE+AREAKERLDERLR+ RK E P+R++  E +   +  S   G+  +
Sbjct: 61  SILNQANQDEKLGEVAREAKERLDERLRSQRKSE-PKRQNSKESLRCVDGRSMVQGEFHK 120

Query: 121 KAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPW 180
           +  G +++ TK R SW KL  WKA +QEEC++CLERF+ GE LVHLPCAH+FHS CL+PW
Sbjct: 121 EVFGPKKSGTK-RFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPW 180

Query: 181 LQANAHCPCCRFPIPS 196
           ++ NAHCPCCR  I S
Sbjct: 181 VENNAHCPCCRMGILS 191

[Close]

BLAST of ClCG02G017240 vs. TrEMBL
Match: F6HCI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.5e-57
Identity = 122/201 (60.70%), Postives = 137/201 (68.16%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKS--------GNEEVGWKESSE 120
           S  NQAY +EKLG +AREAKERLDERLRT RK E  R KS        G   V  +  +E
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTE 120

Query: 121 KNGKKKEKAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFH 180
             G K+  +K         R SWGKL  WKA +Q EC++CLE F+ GE LVHLPCAH+FH
Sbjct: 121 VFGSKRSGSK---------RFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFH 180

Query: 181 STCLVPWLQANAHCPCCRFPI 194
           S CL+PWL+ NAHCPCCR  I
Sbjct: 181 SRCLMPWLETNAHCPCCRMGI 190

[Close]

BLAST of ClCG02G017240 vs. TrEMBL
Match: A5ASH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 121/201 (60.20%), Postives = 136/201 (67.66%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKS--------GNEEVGWKESSE 120
           S  NQAY +EKLG +AREAKERLDERLRT RK E  R KS        G   V  +  +E
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTE 120

Query: 121 KNGKKKEKAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFH 180
             G K+         +  KR SWGKL  WKA +Q EC++CLE F+ GE LVHLPCAH+FH
Sbjct: 121 VFGSKR---------SGSKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFH 180

Query: 181 STCLVPWLQANAHCPCCRFPI 194
           S CL+PWL+ NAHCPC R  I
Sbjct: 181 SRCLMPWLETNAHCPCXRMGI 190

[Close]

BLAST of ClCG02G017240 vs. TrEMBL
Match: A0A0D2PA85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.0e-53
Identity = 117/196 (59.69%), Postives = 143/196 (72.96%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQS  SSDS S A   G TRR SFCLYTSN + H  SS SSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAV-IGLTRRSSFCLYTSNNETHH-SSVSSQQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKES-SEKNGKKKE 120
           S   Q+++++KLG +AREAKERLDERLR+ RK E P+R S  E +   +  S   G+ + 
Sbjct: 61  SILTQSFQDDKLGGVAREAKERLDERLRSQRKSE-PKRHSNKEGMKCVDGKSLVQGELRT 120

Query: 121 KAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPW 180
           +  G +++ +K R SW KL  WKA +Q+EC++CLERF+V E LVH PCAH+FHS CLVPW
Sbjct: 121 EVFGSKKSASK-RFSWAKL-NWKASDQDECAICLERFKVDESLVHPPCAHRFHSRCLVPW 180

Query: 181 LQANAHCPCCRFPIPS 196
           L+ +AHCPCCR  I S
Sbjct: 181 LENHAHCPCCRMGILS 191

[Close]

BLAST of ClCG02G017240 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-41
Identity = 101/211 (47.87%), Postives = 127/211 (60.19%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQS---ITSSDSPSTAAKSGS--TRRPSFCLYTSNRDVHLISSS 60
           MAGMLPGVECARRRRFH     I SS++ S AA +G   TRRPSF LYT+N + H    S
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SSQQRSSSNQAY---ENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKESSE 120
            S+ RS  N++Y    +EKL   A+EAK+RL++RLR       PR +   ++        
Sbjct: 61  FSE-RSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIP-----PRTRQNGKD-------- 120

Query: 121 KNGKKKEKAKGK-------EETTTKKRLSWGKLMKW---KALEQEECSVCLERFRVGEPL 180
             G K E+ KGK       E    KK  S G+LM+W   +  EQ++C++CL+RF+ GE L
Sbjct: 121 -KGNKLEQGKGKPLGDLPTEVVGLKK--SRGRLMEWFKRRVREQQDCAICLDRFKKGETL 180

Query: 181 VHLPCAHKFHSTCLVPWLQANAHCPCCRFPI 194
           VHLPCAHKFHS CL+PWL  N +CP CR  I
Sbjct: 181 VHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]

BLAST of ClCG02G017240 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 48/156 (30.77%), Postives = 72/156 (46.15%), Query Frame = 1


Query: 53  SSSSSQQRSSSNQAYENEKLGEIAREAKERLDERLR---------THRKPENPRRKSGNE 112
           S+ +  Q SS      +E+L      A++RL ERLR         ++R   + +R+S   
Sbjct: 93  STDTETQSSSFVNLNGSERLPGAVLLARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFH 152

Query: 113 EV---------GWKESSEKNGKKKEKAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLE 172
            +         G + + E N K +   +       ++  S  ++      E  +CS+CLE
Sbjct: 153 SIDGDPIFQLAGLQVTYECNKKPQGLTQDAINCLHRQTFSSAEVKS----EMRDCSICLE 212

Query: 173 RFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCR 191
            F  G+ L+ LPC H FHS+CL PWL+A   CPCCR
Sbjct: 213 SFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCR 244

[Close]

BLAST of ClCG02G017240 vs. TAIR10
Match: AT5G56340.1 (AT5G56340.1 RING/U-box superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 142 KALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCRFPIPS 196
           K +E  +CSVCL+ F  G     +PC HKFH  C+VPWL+ ++ CP CRF +PS
Sbjct: 252 KIMEPLQCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPS 305

[Close]

BLAST of ClCG02G017240 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-12
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1


Query: 142 KALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCRFPIPS 196
           K  E  +CSVCL+ F +G     +PC HKFHS CL+PWL+ ++ CP CR+ +P+
Sbjct: 216 KIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPA 269

[Close]

BLAST of ClCG02G017240 vs. TAIR10
Match: AT3G13430.1 (AT3G13430.1 RING/U-box superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 6.6e-12
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1


Query: 148 ECSVCLERFRVGEPLVHLPCAHKFHSTCLVPWLQANAHCPCCRFPIPS 196
           +CSVCL+ F +G     +PC HKFHS CL+PWL+ ++ CP CR+ +P+
Sbjct: 224 QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPT 271

[Close]

BLAST of ClCG02G017240 vs. NCBI nr
Match: gi|449442999|ref|XP_004139268.1| (PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 6.3e-89
Identity = 168/197 (85.28%), Postives = 176/197 (89.34%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQSI SSDSP TA KSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKESSEK-NGKKKE 120
           S +NQAY+N+KLGEIAREAKERLDERLRTHRKPEN R+K+ NEEV  KES EK NG+KKE
Sbjct: 61  SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEKKE 120

Query: 121 --KAKGKEETTTKKRLSWG-KLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCL 180
               KGKEE  TKKR SWG KLMKWKA EQEECSVCLERFR+ EPL+HLPCAHKFHSTCL
Sbjct: 121 MKNTKGKEE-ETKKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTCL 180

Query: 181 VPWLQANAHCPCCRFPI 194
           VPWLQANAHCPCCRFPI
Sbjct: 181 VPWLQANAHCPCCRFPI 196

[Close]

BLAST of ClCG02G017240 vs. NCBI nr
Match: gi|659070796|ref|XP_008456717.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 1.7e-86
Identity = 163/194 (84.02%), Postives = 173/194 (89.18%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFH SI SSDSPSTAAKSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKESSEK-NGKKKE 120
           S +N+A++NEKLGEIAREAKERLDERLRTHRKPEN  + S NEEV WKES EK NG++KE
Sbjct: 61  SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSSKNSKNEEVKWKESREKNNGERKE 120

Query: 121 --KAKGKEETTTKKRLSWG-KLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCL 180
               KGKEE  T+KR SWG KLMKWKA EQ+ECSVCLERFR GEPL+HLPCAHKFHSTCL
Sbjct: 121 MRSTKGKEE-ETRKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHSTCL 180

Query: 181 VPWLQANAHCPCCR 191
           VPWLQANAHCPCCR
Sbjct: 181 VPWLQANAHCPCCR 193

[Close]

BLAST of ClCG02G017240 vs. NCBI nr
Match: gi|659070794|ref|XP_008456709.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 5.0e-86
Identity = 165/195 (84.62%), Postives = 174/195 (89.23%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFH SI SSDSPSTAAKSGSTRRPSFCLYTSNRD HLISSSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRK-SGNEEVGWKESSEK-NGKKK 120
           S +N+A++NEKLGEIAREAKERLDERLRTHRKPEN R K S NEEV WKES EK NG++K
Sbjct: 61  SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSRSKNSKNEEVKWKESREKNNGERK 120

Query: 121 E--KAKGKEETTTKKRLSWG-KLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTC 180
           E    KGKEE  T+KR SWG KLMKWKA EQ+ECSVCLERFR GEPL+HLPCAHKFHSTC
Sbjct: 121 EMRSTKGKEE-ETRKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHSTC 180

Query: 181 LVPWLQANAHCPCCR 191
           LVPWLQANAHCPCCR
Sbjct: 181 LVPWLQANAHCPCCR 194

[Close]

BLAST of ClCG02G017240 vs. NCBI nr
Match: gi|590579073|ref|XP_007013686.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 230.7 bits (587), Expect = 2.2e-57
Identity = 122/196 (62.24%), Postives = 147/196 (75.00%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQS  +SDSPST    G TRR SFCLYTSN + H  SS SSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSNHETHH-SSVSSQQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKSGNEEVGWKES-SEKNGKKKE 120
           S  NQA ++EKLGE+AREAKERLDERLR+ RK E P+R++  E +   +  S   G+  +
Sbjct: 61  SILNQANQDEKLGEVAREAKERLDERLRSQRKSE-PKRQNSKESLRCVDGRSMVQGEFHK 120

Query: 121 KAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFHSTCLVPW 180
           +  G +++ TK R SW KL  WKA +QEEC++CLERF+ GE LVHLPCAH+FHS CL+PW
Sbjct: 121 EVFGPKKSGTK-RFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPW 180

Query: 181 LQANAHCPCCRFPIPS 196
           ++ NAHCPCCR  I S
Sbjct: 181 VENNAHCPCCRMGILS 191

[Close]

BLAST of ClCG02G017240 vs. NCBI nr
Match: gi|225463022|ref|XP_002266038.1| (PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 122/201 (60.70%), Postives = 137/201 (68.16%), Query Frame = 1


Query: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKSGSTRRPSFCLYTSNRDVHLISSSSSQQR 60
           MAGMLPGVECARRRRFHQS   SDSP T A  G TRR SFCLYTSN + H  +SSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSP-TVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  SSSNQAYENEKLGEIAREAKERLDERLRTHRKPENPRRKS--------GNEEVGWKESSE 120
           S  NQAY +EKLG +AREAKERLDERLRT RK E  R KS        G   V  +  +E
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTE 120

Query: 121 KNGKKKEKAKGKEETTTKKRLSWGKLMKWKALEQEECSVCLERFRVGEPLVHLPCAHKFH 180
             G K+  +K         R SWGKL  WKA +Q EC++CLE F+ GE LVHLPCAH+FH
Sbjct: 121 VFGSKRSGSK---------RFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFH 180

Query: 181 STCLVPWLQANAHCPCCRFPI 194
           S CL+PWL+ NAHCPCCR  I
Sbjct: 181 SRCLMPWLETNAHCPCCRMGI 190

The following BLAST results are available for this feature:

BLAST of ClCG02G017240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHY1A_ARATH	3.6e-12	30.77	Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2...	[more]
RN103_RAT	2.6e-10	28.57	E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103 PE=2 SV=1	[more]
YKW3_SCHPO	7.6e-10	42.86	Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra...	[more]
RNG1L_ARATH	1.3e-09	43.14	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
ZNRF3_XENTR	1.3e-09	38.82	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1	[more]

BLAST of ClCG02G017240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG47_CUCSA	4.4e-89	85.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1	[more]
A0A061GN77_THECC	1.5e-57	62.24	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1	[more]
F6HCI8_VITVI	7.5e-57	60.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=...	[more]
A5ASH9_VITVI	1.1e-55	60.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1	[more]
A0A0D2PA85_GOSRA	1.0e-53	59.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1	[more]

BLAST of ClCG02G017240 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15580.1	2.3e-41	47.87	RING/U-box superfamily protein	[more]
AT1G49850.1	2.0e-13	30.77	RING/U-box superfamily protein	[more]
AT5G56340.1	1.3e-12	50.00	RING/U-box superfamily protein	[more]
AT1G55530.1	3.0e-12	48.15	RING/U-box superfamily protein	[more]
AT3G13430.1	6.6e-12	50.00	RING/U-box superfamily protein	[more]

BLAST of ClCG02G017240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442999\|ref\|XP_004139268.1\|	6.3e-89	85.28	PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus]	[more]
gi\|659070796\|ref\|XP_008456717.1\|	1.7e-86	84.02	PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo]	[more]
gi\|659070794\|ref\|XP_008456709.1\|	5.0e-86	84.62	PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo]	[more]
gi\|590579073\|ref\|XP_007013686.1\|	2.2e-57	62.24	RING/U-box superfamily protein [Theobroma cacao]	[more]
gi\|225463022\|ref\|XP_002266038.1\|	1.1e-56	60.70	PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G017240.1	ClCG02G017240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 148..190 score: 1.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 149..189 score: 7.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 149..190 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 145..193 score: 1.9
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 136..193 score: 4.6E-35coord: 72..109 score: 4.6
None	No IPR available	PANTHER	PTHR22763:SF49	SUBFAMILY NOT NAMED	coord: 136..193 score: 4.6E-35coord: 72..109 score: 4.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 135..194 score: 4.86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G017240	Csa2G009360	Cucumber (Chinese Long) v2	cuwcgB122
ClCG02G017240	MELO3C004441	Melon (DHL92) v3.5.1	mewcgB375
ClCG02G017240	Cla013602	Watermelon (97103) v1	wcgwmB197
ClCG02G017240	Cla97C02G042930	Watermelon (97103) v2	wcgwmbB138
ClCG02G017240	Bhi06G001575	Wax gourd	wcgwgoB260
ClCG02G017240	CSPI02G02370	Wild cucumber (PI 183967)	cpiwcgB128
ClCG02G017240	Cucsa.132720	Cucumber (Gy14) v1	cgywcgB218
ClCG02G017240	CmaCh12G011620	Cucurbita maxima (Rimu)	cmawcgB156
ClCG02G017240	CmoCh12G011850	Cucurbita moschata (Rifu)	cmowcgB144
ClCG02G017240	Lsi11G003860	Bottle gourd (USVL1VR-Ls)	lsiwcgB098
ClCG02G017240	Cp4.1LG11g10360	Cucurbita pepo (Zucchini)	cpewcgB104
ClCG02G017240	Cp4.1LG07g11020	Cucurbita pepo (Zucchini)	cpewcgB736
ClCG02G017240	CsGy2G002450	Cucumber (Gy14) v2	cgybwcgB119
ClCG02G017240	MELO3C004441.2	Melon (DHL92) v3.6.1	medwcgB369
ClCG02G017240	Carg23020	Silver-seed gourd	carwcgB1042
ClCG02G017240	Carg17455	Silver-seed gourd	carwcgB0245
ClCG02G017240	CsaV3_2G003550	Cucumber (Chinese Long) v3	cucwcgB137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G017240	Cucurbita maxima (Rimu)	cmawcgB695
ClCG02G017240	Cucurbita moschata (Rifu)	cmowcgB700