CmaCh12G011620 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G011620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr12 : 9167513 .. 9170599 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTGTTTTCTCTCACTACTTTCATGAGAGAGAGAGAGAGGAATGATTGAGAAAATCGTGTTGTTATAATTGTACGTTTTACGCTCACCTTCAATGGCGGGGACCCGTTTTTGTCCATTACCTTCATCACTTCCATGCTCCGTTGGCCTTCGTTCTTTATCCTTATTTTAATTCATTCTGCTCCAATTTCCCCATCTTCGATCGATCTTTCCAGTTCTTTTCATTTTGTTCTTCGTGTTCTTGATTTTTCTATTTCTGGATTTCTTGTTTGAGTTGCTGGAAATGAGAGATTTCGATTGGAATTGTTCTTTTACAGCGCATCTGGATTTTGGTTCATTTTGATTAAACTGAGAAACTCCATTGATTTTGAGTTGGAATTGTTCTGGATTTGGGGAGTTTTTCTCTGTTCTTTGTCGTTCTGGCTTTTCAGCAACTGCGTGGTTCTGATTCATTTGCTGAAACTGAGAAAATCAGTGAGTGTTCGGGGATTTTATAAGCTATGTTTTCTCTGTTCTTCTTCATCCGATGAACTCCATTGATTCTGAGTTAAAATCAGTGCGTGTTCGCGGATTTTACAAGTTGTCTTCTCTCTGTTCTTCTTCATCTGATGAACTCCATTGATTCTGAGTTGAAATTAGTGAGGGTTTGGGGATTTTATAAGTTATCTTCTCTCTGTTCTTCATCATGTGATGAACTCCATTGATTTCAAGTTGAAATCAGTGAGTATTTGGGGATTTTACAAGTTATCTTTTCTCTGTTCTTCTTCATGTGATGAACTCCATTGATTCCGAGTTGAAATCGGTGAATATTTGGGGATTTTACGAGTTATCTTTTCTCTGTTCTTCTTCATGTGATGAACTCCATTGATTCCGAGTTGAAATCAGTGAGTGTTTGGGGATTTTATAAGTTATCTTCTCTCTGTTCTTCATCATCTGATGAACTCCACTGATTCTGAGTGGAAATCGGTGAGTGTTCGAGGATTTTACAAGTTATCTTCTCTCTGTTTTTCTTCATCTGATGAACTCCATTGTTTTTCTGCAATTATGCTCTCATTAATCTGCTGAAACTTACAAGCTCTTCAAATTTTGAATCGAAATCTGCTCAAAATCGTCTTCGAATTTATTTCATCTAAATAAACTCGTTGATCAATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGAATCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATACAAGCAACCGTGATTTTCACCTCACTTCATCTTCTTCACAGGTATCAAAACAAATCTAGAAATTCCATCCATATCCTTCGAATTTTCTGTTTGTTTCCCGTGAAAATCTTGATGAATGATTTCAATTGTATAAGCAACGGTGCTCTTCGAATCACGCTTACCAGAACGAGAAGCTTGGGCAAGCTGCAAGGGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGAACGCACAGAAAACCTGAGAATTCAAGGTAATTTCTTCATGAACCACCTTATTTCTTCATAATTTTGTTTCATCTTTATACATATATATATAATAGGAATTAAAATATTATTTTAGTTGATTTTTGTACTATGAGGAGAAAGAGTGTGGAAACCTTTCACTAGCAAATGTGTTCAACTTCTCCTTACCCGATAGTTATATGCAGTAACCTATTGTTATTGTCTTTTGCTTACATTCCCATATAACACCAATTTCAATTTTTCAAATCTTACTTTCGAAATCTCTCTGCCTCTGTTTTCTAAAACCTTCTTCTTGAATCGAGGCCAAAGGCTCGAGCATACGTCACTTGACAGTAGGCGATCCAAGAACAAATAGACTTAACTCACTTGTTGCTGGAAAGTGAGTGTTACACAATCGCAAGTCTGCTATCATCAAACAACGGCTTACTGCATATAACTATCGGGTAGGGAGATATGACTAGTAAAACCTAAACAAGATAGTATGGGCTAGGTGCAGGGTTAGGGTTAGGTTGTTATATTTAATTTTAGTTTATATAGTTTAATTAGCATATAAATTGTTATTATTCTTATTTAAAAAATTATATTATTTTAAAAATATTTTAATCATATTTGAACTAAAATTAAATAAACTTGAAAGTAAAGAAAATAAAAACTATAAAAATCATTATCGATCATTGGAGCGGGTAGCAATTAGGTCCTTCAACTTTGTTAAGTGTTGAAACTATTATCGTTTACTGTTTTTTTTTGTCTTCTATATTGATTGACAATAAATTGGGGTTTTCGTGTTAACCCATAAGATAATTAATTAAATTAAAAGTTTAAGGATATAATTAAAACCCGAAACAAAGTTGAAGAAGTTGATTGCAATAAGTAACCAAGTTTAGGGATTAATTGGTCAAATGTTTTGTTTTAATTATTAAAAGAAGAAAAAAATAGATTTGAAAAGTTTGAATTTAGTATCTTGACAAATCGTCTCTAAACCATACCTGATAGCCACGTAAAAACCCAATTCACTTTCGTTCATTTTTACTCGACCCTATAATTTTATCCTGACAACTAACGAATTAGTTGCTTGAAAAATTTAATAACACAAGAAGACAACAAGGCTCTACTAAATTATCGCAATAGAGCCAATTCAAAACTTTTAAATCATGTTCAAACTACGAGAATAGCCAAATTTAAAATTAACGTTAAAAATCTATTGATTTTCTTTTTGAATTATAGGACGAAGAGTAGTAGTGAAGAAGTAAGGTTGAAGAAAGAGAATGTGAAGGGAAAGGAAGAAACAACAACCAAGAAGAGGTTCAGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAAGAAGAGTGCACTGTTTGTCTCGAAAGGTTCAGAGCGGCCGAGCCACTGGTCCATCTTCCATGCGCCCACAAGTTCCACTCCATGTGCTTGGTCCCTTGGCTCCAAGCTAATGCCCATTGCCCTTGTTGTAGGTACCCTATTCTCGCTCAATAACAAACGAGAAAGTATTCGAATAAATTAGATGTACGAGAAACCATTAAAAAATTAAAAGTGATTAAAC

mRNA sequence

TTCCTTGTTTTCTCTCACTACTTTCATGAGAGAGAGAGAGAGGAATGATTGAGAAAATCGTGTTGTTATAATTGTACGTTTTACGCTCACCTTCAATGGCGGGGACCCGTTTTTGTCCATTACCTTCATCACTTCCATGCTCCGTTGGCCTTCGTTCTTTATCCTTATTTTAATTCATTCTGCTCCAATTTCCCCATCTTCGATCGATCTTTCCAGTTCTTTTCATTTTGTTCTTCGTGTTCTTGATTTTTCTATTTCTGGATTTCTTGTTTGAGTTGCTGGAAATGAGAGATTTCGATTGGAATTGTTCTTTTACAGCGCATCTGGATTTTGGTTCATTTTGATTAAACTGAGAAACTCCATTGATTTTGAGTTGGAATTGTTCTGGATTTGGGGAGTTTTTCTCTGTTCTTTGTCGTTCTGGCTTTTCAGCAACTGCGTGGTTCTGATTCATTTGCTGAAACTGAGAAAATCAGTGAGTGTTCGGGGATTTTATAAGCTATGTTTTCTCTGTTCTTCTTCATCCGATGAACTCCATTGATTCTGAGTTAAAATCAGTGCGTGTTCGCGGATTTTACAAGTTGTCTTCTCTCTGTTCTTCTTCATCTGATGAACTCCATTGATTCTGAGTTGAAATTAGTGAGGGTTTGGGGATTTTATAAGTTATCTTCTCTCTGTTCTTCATCATGTGATGAACTCCATTGATTTCAAGTTGAAATCAGTGAGTATTTGGGGATTTTACAAGTTATCTTTTCTCTGTTCTTCTTCATGTGATGAACTCCATTGATTCCGAGTTGAAATCGGTGAATATTTGGGGATTTTACGAGTTATCTTTTCTCTGTTCTTCTTCATGTGATGAACTCCATTGATTCCGAGTTGAAATCAGTGAGTGTTTGGGGATTTTATAAGTTATCTTCTCTCTGTTCTTCATCATCTGATGAACTCCACTGATTCTGAGTGGAAATCGGTGAGTGTTCGAGGATTTTACAAGTTATCTTCTCTCTGTTTTTCTTCATCTGATGAACTCCATTGTTTTTCTGCAATTATGCTCTCATTAATCTGCTGAAACTTACAAGCTCTTCAAATTTTGAATCGAAATCTGCTCAAAATCGTCTTCGAATTTATTTCATCTAAATAAACTCGTTGATCAATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGAATCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATACAAGCAACCGTGATTTTCACCTCACTTCATCTTCTTCACAGCAACGGTGCTCTTCGAATCACGCTTACCAGAACGAGAAGCTTGGGCAAGCTGCAAGGGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGAACGCACAGAAAACCTGAGAATTCAAGGACGAAGAGTAGTAGTGAAGAAGTAAGGTTGAAGAAAGAGAATGTGAAGGGAAAGGAAGAAACAACAACCAAGAAGAGGTTCAGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAAGAAGAGTGCACTGTTTGTCTCGAAAGGTTCAGAGCGGCCGAGCCACTGGTCCATCTTCCATGCGCCCACAAGTTCCACTCCATGTGCTTGGTCCCTTGGCTCCAAGCTAATGCCCATTGCCCTTGTTGTAGGTACCCTATTCTCGCTCAATAACAAACGAGAAAGTATTCGAATAAATTAGATGTACGAGAAACCATTAAAAAATTAAAAGTGATTAAAC

Coding sequence (CDS)

ATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGAATCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATACAAGCAACCGTGATTTTCACCTCACTTCATCTTCTTCACAGCAACGGTGCTCTTCGAATCACGCTTACCAGAACGAGAAGCTTGGGCAAGCTGCAAGGGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGAACGCACAGAAAACCTGAGAATTCAAGGACGAAGAGTAGTAGTGAAGAAGTAAGGTTGAAGAAAGAGAATGTGAAGGGAAAGGAAGAAACAACAACCAAGAAGAGGTTCAGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAAGAAGAGTGCACTGTTTGTCTCGAAAGGTTCAGAGCGGCCGAGCCACTGGTCCATCTTCCATGCGCCCACAAGTTCCACTCCATGTGCTTGGTCCCTTGGCTCCAAGCTAATGCCCATTGCCCTTGTTGTAGGTACCCTATTCTCGCTCAATAA

Protein sequence

MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHLTSSSSQQRCSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLKKENVKGKEETTTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPILAQ
Homology
[Close]
BLAST of CmaCh12G011620 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1 

Query: 134 SEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPI 184
           SE  +C++CLE F   + L+ LPC H FHS CL PWL+A   CPCCR  I
Sbjct: 198 SEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]
BLAST of CmaCh12G011620 vs. Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-09
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1 

Query: 135 EQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPI 184
           E+ ECT+C+E F+  + ++ LPC H FH  C+ PWL+ N  C  CR P+
Sbjct: 392 EEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440

[Close]
BLAST of CmaCh12G011620 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.8e-08
Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = 1 

Query: 134 SEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPI 184
           SE  +C VC++ F     +  +PC H FH  CL+PWL+ +  CP CR+ +
Sbjct: 211 SEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of CmaCh12G011620 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 1 

Query: 138 ECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPI 184
           +C VCL  F A E ++ +PC H FHS C++PWL     CP CR+ +
Sbjct: 87  KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132

[Close]
BLAST of CmaCh12G011620 vs. Swiss-Prot
Match: RIE1_ARATH (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 1 

Query: 134 SEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPIL 185
           +E  +C +CL  +     L  LPC H FHS C+V WL+  A CP C+Y IL
Sbjct: 302 AEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNIL 352

[Close]
BLAST of CmaCh12G011620 vs. TrEMBL
Match: A0A0A0LG47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 9.3e-73
Identity = 151/197 (76.65%), Postives = 166/197 (84.26%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFHQSI SS+S  TA K GSTRR SFCLYTSNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLKK----------- 120
             +N AYQN+KLG+ AREAKERLDERLRTHRKPENSR K+++EEV+ K+           
Sbjct: 61  SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEKKE 120

Query: 121 -ENVKGKEETTTKKRFSWG-KLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCL 180
            +N KGKEE T KKRFSWG KLMKWKASEQEEC+VCLERFR +EPL+HLPCAHKFHS CL
Sbjct: 121 MKNTKGKEEET-KKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTCL 180

Query: 181 VPWLQANAHCPCCRYPI 184
           VPWLQANAHCPCCR+PI
Sbjct: 181 VPWLQANAHCPCCRFPI 196

[Close]
BLAST of CmaCh12G011620 vs. TrEMBL
Match: A0A061GN77_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.6e-51
Identity = 120/195 (61.54%), Postives = 143/195 (73.33%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHLTSSSSQQRC 60
           MAGMLPGVECARRRRFHQS  +S+S ST   +G TRRSSFCLYTSN + H +S SSQQR 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSNHETHHSSVSSQQRS 60

Query: 61  SSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLKK----------EN 120
             N A Q+EKLG+ AREAKERLDERLR+ RK E  R ++S E +R             + 
Sbjct: 61  ILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKR-QNSKESLRCVDGRSMVQGEFHKE 120

Query: 121 VKGKEETTTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWL 180
           V G +++ TK RFSW KL  WKAS+QEEC +CLERF+A E LVHLPCAH+FHS CL+PW+
Sbjct: 121 VFGPKKSGTK-RFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPWV 180

Query: 181 QANAHCPCCRYPILA 186
           + NAHCPCCR  IL+
Sbjct: 181 ENNAHCPCCRMGILS 191

[Close]
BLAST of CmaCh12G011620 vs. TrEMBL
Match: F6HCI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.4e-50
Identity = 122/193 (63.21%), Postives = 138/193 (71.50%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRD-FHLTSSSSQQR 60
           MAGMLPGVECARRRRFHQS   S+S  T A  G TRRSSFCLYTSN +  H TSSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDS-PTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRL--KKENVKGKEET 120
              N AY +EKLG  AREAKERLDERLRT RK E +R K S E +R+   +  V G+ +T
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNK-SKESLRIVDGRAMVVGELQT 120

Query: 121 -------TTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWL 180
                  +  KRFSWGKL  WKAS+Q EC +CLE F+A E LVHLPCAH+FHS CL+PWL
Sbjct: 121 EVFGSKRSGSKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLMPWL 180

Query: 181 QANAHCPCCRYPI 184
           + NAHCPCCR  I
Sbjct: 181 ETNAHCPCCRMGI 190

[Close]
BLAST of CmaCh12G011620 vs. TrEMBL
Match: A5ASH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48
Identity = 121/193 (62.69%), Postives = 137/193 (70.98%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRD-FHLTSSSSQQR 60
           MAGMLPGVECARRRRFHQS   S+S  T A  G TRRSSFCLYTSN +  H TSSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDS-PTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRL--KKENVKGKEET 120
              N AY +EKLG  AREAKERLDERLRT RK E +R K S E +R+   +  V G+ +T
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNK-SKESLRIVDGRAMVVGELQT 120

Query: 121 -------TTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWL 180
                  +  KRFSWGKL  WKAS+Q EC +CLE F+A E LVHLPCAH+FHS CL+PWL
Sbjct: 121 EVFGSKRSGSKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLMPWL 180

Query: 181 QANAHCPCCRYPI 184
           + NAHCPC R  I
Sbjct: 181 ETNAHCPCXRMGI 190

[Close]
BLAST of CmaCh12G011620 vs. TrEMBL
Match: A0A0D2PA85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-48
Identity = 116/194 (59.79%), Postives = 140/194 (72.16%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHLTSSSSQQRC 60
           MAGMLPGVECARRRRFHQS  SS+S+S A  +G TRRSSFCLYTSN + H +S SSQQR 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAV-IGLTRRSSFCLYTSNNETHHSSVSSQQRS 60

Query: 61  SSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLK--KENVKGKEET- 120
               ++Q++KLG  AREAKERLDERLR+ RK E  R  S+ E ++    K  V+G+  T 
Sbjct: 61  ILTQSFQDDKLGGVAREAKERLDERLRSQRKSEPKR-HSNKEGMKCVDGKSLVQGELRTE 120

Query: 121 ------TTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQ 180
                 +  KRFSW KL  WKAS+Q+EC +CLERF+  E LVH PCAH+FHS CLVPWL+
Sbjct: 121 VFGSKKSASKRFSWAKL-NWKASDQDECAICLERFKVDESLVHPPCAHRFHSRCLVPWLE 180

Query: 181 ANAHCPCCRYPILA 186
            +AHCPCCR  IL+
Sbjct: 181 NHAHCPCCRMGILS 191

[Close]
BLAST of CmaCh12G011620 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 6.2e-36
Identity = 98/201 (48.76%), Postives = 123/201 (61.19%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQS---ITSSESASTAAKLGS--TRRSSFCLYTSNRDFHLTSSS 60
           MAGMLPGVECARRRRFH     I SS +AS AA  G   TRR SF LYT+N + H    S
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SQQRCSSNHAY---QNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLKKENVK 120
             +R   N +Y    +EKL  AA+EAK+RL++RLR        RT+ + ++   K E  K
Sbjct: 61  FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIP-----PRTRQNGKDKGNKLEQGK 120

Query: 121 GK-------EETTTKKRFSWGKLMKW---KASEQEECTVCLERFRAAEPLVHLPCAHKFH 180
           GK       E    KK  S G+LM+W   +  EQ++C +CL+RF+  E LVHLPCAHKFH
Sbjct: 121 GKPLGDLPTEVVGLKK--SRGRLMEWFKRRVREQQDCAICLDRFKKGETLVHLPCAHKFH 180

Query: 181 SMCLVPWLQANAHCPCCRYPI 184
           S+CL+PWL  N +CP CR  I
Sbjct: 181 SICLLPWLDTNVYCPYCRTDI 194

[Close]
BLAST of CmaCh12G011620 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1 

Query: 134 SEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPI 184
           SE  +C++CLE F   + L+ LPC H FHS CL PWL+A   CPCCR  I
Sbjct: 198 SEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]
BLAST of CmaCh12G011620 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-10
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 

Query: 132 KASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPI 184
           K SE  +C++CL+ F        +PC HKFH  C+VPWL+ ++ CP CRY +
Sbjct: 234 KISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCRYEL 285

[Close]
BLAST of CmaCh12G011620 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-10
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1 

Query: 109 ENVKGKEETTTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVP 168
           EN   +  T   K+ +   L   K  E  +C+VCL+ F        +PC HKFHS CL+P
Sbjct: 193 ENDPNRYGTPPAKKEAVEALATVKIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLP 252

Query: 169 WLQANAHCPCCRYPILA 186
           WL+ ++ CP CRY + A
Sbjct: 253 WLELHSSCPVCRYQLPA 269

[Close]
BLAST of CmaCh12G011620 vs. TAIR10
Match: AT1G68070.1 (AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-10
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 1 

Query: 135 EQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWLQANAHCPCCRYPIL 185
           E  +C +CL  +     LV LPC H FHS C+V WL+ NA CP C++ IL
Sbjct: 288 EDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNIL 337

[Close]
BLAST of CmaCh12G011620 vs. NCBI nr
Match: gi|449442999|ref|XP_004139268.1| (PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 1.3e-72
Identity = 151/197 (76.65%), Postives = 166/197 (84.26%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFHQSI SS+S  TA K GSTRR SFCLYTSNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLKK----------- 120
             +N AYQN+KLG+ AREAKERLDERLRTHRKPENSR K+++EEV+ K+           
Sbjct: 61  SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEKKE 120

Query: 121 -ENVKGKEETTTKKRFSWG-KLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCL 180
            +N KGKEE T KKRFSWG KLMKWKASEQEEC+VCLERFR +EPL+HLPCAHKFHS CL
Sbjct: 121 MKNTKGKEEET-KKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTCL 180

Query: 181 VPWLQANAHCPCCRYPI 184
           VPWLQANAHCPCCR+PI
Sbjct: 181 VPWLQANAHCPCCRFPI 196

[Close]
BLAST of CmaCh12G011620 vs. NCBI nr
Match: gi|659070794|ref|XP_008456709.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 2.3e-69
Identity = 148/195 (75.90%), Postives = 164/195 (84.10%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFH SI SS+S STAAK GSTRR SFCLYTSNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSS-SEEVRLKKE--------- 120
             +N A+QNEKLG+ AREAKERLDERLRTHRKPENSR+K+S +EEV+ K+          
Sbjct: 61  SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSRSKNSKNEEVKWKESREKNNGERK 120

Query: 121 ---NVKGKEETTTKKRFSWG-KLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMC 180
              + KGKEE T +KRFSWG KLMKWKASEQ+EC+VCLERFR+ EPL+HLPCAHKFHS C
Sbjct: 121 EMRSTKGKEEET-RKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHSTC 180

[Close]
BLAST of CmaCh12G011620 vs. NCBI nr
Match: gi|659070796|ref|XP_008456717.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 4.0e-69
Identity = 146/194 (75.26%), Postives = 160/194 (82.47%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFH SI SS+S STAAK GSTRR SFCLYTSNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLKKE---------- 120
             +N A+QNEKLG+ AREAKERLDERLRTHRKPENS   S +EEV+ K+           
Sbjct: 61  SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSSKNSKNEEVKWKESREKNNGERKE 120

Query: 121 --NVKGKEETTTKKRFSWG-KLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCL 180
             + KGKEE T +KRFSWG KLMKWKASEQ+EC+VCLERFR+ EPL+HLPCAHKFHS CL
Sbjct: 121 MRSTKGKEEET-RKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHSTCL 180

[Close]
BLAST of CmaCh12G011620 vs. NCBI nr
Match: gi|590579073|ref|XP_007013686.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 120/195 (61.54%), Postives = 143/195 (73.33%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRDFHLTSSSSQQRC 60
           MAGMLPGVECARRRRFHQS  +S+S ST   +G TRRSSFCLYTSN + H +S SSQQR 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSNHETHHSSVSSQQRS 60

Query: 61  SSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRLKK----------EN 120
             N A Q+EKLG+ AREAKERLDERLR+ RK E  R ++S E +R             + 
Sbjct: 61  ILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKR-QNSKESLRCVDGRSMVQGEFHKE 120

Query: 121 VKGKEETTTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWL 180
           V G +++ TK RFSW KL  WKAS+QEEC +CLERF+A E LVHLPCAH+FHS CL+PW+
Sbjct: 121 VFGPKKSGTK-RFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPWV 180

Query: 181 QANAHCPCCRYPILA 186
           + NAHCPCCR  IL+
Sbjct: 181 ENNAHCPCCRMGILS 191

[Close]
BLAST of CmaCh12G011620 vs. NCBI nr
Match: gi|225463022|ref|XP_002266038.1| (PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera])

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-49
Identity = 122/193 (63.21%), Postives = 138/193 (71.50%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSESASTAAKLGSTRRSSFCLYTSNRD-FHLTSSSSQQR 60
           MAGMLPGVECARRRRFHQS   S+S  T A  G TRRSSFCLYTSN +  H TSSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDS-PTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  CSSNHAYQNEKLGQAAREAKERLDERLRTHRKPENSRTKSSSEEVRL--KKENVKGKEET 120
              N AY +EKLG  AREAKERLDERLRT RK E +R K S E +R+   +  V G+ +T
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNK-SKESLRIVDGRAMVVGELQT 120

Query: 121 -------TTKKRFSWGKLMKWKASEQEECTVCLERFRAAEPLVHLPCAHKFHSMCLVPWL 180
                  +  KRFSWGKL  WKAS+Q EC +CLE F+A E LVHLPCAH+FHS CL+PWL
Sbjct: 121 EVFGSKRSGSKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLMPWL 180

Query: 181 QANAHCPCCRYPI 184
           + NAHCPCCR  I
Sbjct: 181 ETNAHCPCCRMGI 190

The following BLAST results are available for this feature:
BLAST of CmaCh12G011620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHY1A_ARATH5.0e-1154.00Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2... [more]
YKW3_SCHPO2.7e-0944.90Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra... [more]
RNG1L_ARATH8.8e-0840.00E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RN181_MOUSE1.1e-0745.65E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1[more]
RIE1_ARATH1.5e-0745.10E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1[more]
BLAST of CmaCh12G011620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG47_CUCSA9.3e-7376.65Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1[more]
A0A061GN77_THECC7.6e-5161.54RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1[more]
F6HCI8_VITVI8.4e-5063.21Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=... [more]
A5ASH9_VITVI1.2e-4862.69Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1[more]
A0A0D2PA85_GOSRA4.6e-4859.79Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1[more]
BLAST of CmaCh12G011620 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15580.16.2e-3648.76 RING/U-box superfamily protein[more]
AT1G49850.12.8e-1254.00 RING/U-box superfamily protein[more]
AT4G26400.22.0e-1044.23 RING/U-box superfamily protein[more]
AT1G55530.17.6e-1038.96 RING/U-box superfamily protein[more]
AT1G68070.17.6e-1048.00 Zinc finger, C3HC4 type (RING finger) family protein[more]
BLAST of CmaCh12G011620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442999|ref|XP_004139268.1|1.3e-7276.65PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus][more]
gi|659070794|ref|XP_008456709.1|2.3e-6975.90PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo][more]
gi|659070796|ref|XP_008456717.1|4.0e-6975.26PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo][more]
gi|590579073|ref|XP_007013686.1|1.1e-5061.54RING/U-box superfamily protein [Theobroma cacao][more]
gi|225463022|ref|XP_002266038.1|1.2e-4963.21PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G011620.1CmaCh12G011620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 138..180
score: 6.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 139..179
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 139..180
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 134..183
score: 3.6
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 126..183
score: 8.4E-38coord: 71..108
score: 8.4
NoneNo IPR availablePANTHERPTHR22763:SF49SUBFAMILY NOT NAMEDcoord: 126..183
score: 8.4E-38coord: 71..108
score: 8.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 126..185
score: 2.91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G011620Cucsa.132720Cucumber (Gy14) v1cgycmaB0364
CmaCh12G011620Cla013602Watermelon (97103) v1cmawmB170
CmaCh12G011620Csa1G265120Cucumber (Chinese Long) v2cmacuB162
CmaCh12G011620Csa2G009360Cucumber (Chinese Long) v2cmacuB173
CmaCh12G011620MELO3C010264Melon (DHL92) v3.5.1cmameB155
CmaCh12G011620MELO3C004441Melon (DHL92) v3.5.1cmameB172
CmaCh12G011620ClCG02G017240Watermelon (Charleston Gray)cmawcgB156
CmaCh12G011620CSPI01G17250Wild cucumber (PI 183967)cmacpiB162
CmaCh12G011620CSPI02G02370Wild cucumber (PI 183967)cmacpiB174
CmaCh12G011620CmoCh10G005270Cucurbita moschata (Rifu)cmacmoB170
CmaCh12G011620CmoCh12G011850Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G011620CmoCh05G012720Cucurbita moschata (Rifu)cmacmoB190
CmaCh12G011620CmoCh11G004920Cucurbita moschata (Rifu)cmacmoB174
CmaCh12G011620Lsi11G003860Bottle gourd (USVL1VR-Ls)cmalsiB159
CmaCh12G011620Lsi06G010550Bottle gourd (USVL1VR-Ls)cmalsiB183
CmaCh12G011620Cp4.1LG07g11020Cucurbita pepo (Zucchini)cmacpeB206
CmaCh12G011620Cp4.1LG11g10360Cucurbita pepo (Zucchini)cmacpeB171
CmaCh12G011620MELO3C010264.2Melon (DHL92) v3.6.1cmamedB169
CmaCh12G011620MELO3C004441.2Melon (DHL92) v3.6.1cmamedB187
CmaCh12G011620CsaV3_1G028490Cucumber (Chinese Long) v3cmacucB0187
CmaCh12G011620CsaV3_2G003550Cucumber (Chinese Long) v3cmacucB0202
CmaCh12G011620Cla97C02G042930Watermelon (97103) v2cmawmbB175
CmaCh12G011620Cla97C06G121210Watermelon (97103) v2cmawmbB189
CmaCh12G011620Bhi06G001575Wax gourdcmawgoB0177
CmaCh12G011620CsGy2G002450Cucumber (Gy14) v2cgybcmaB178
CmaCh12G011620Carg23020Silver-seed gourdcarcmaB1483
CmaCh12G011620Carg17455Silver-seed gourdcarcmaB0355
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G011620CmaCh10G004940Cucurbita maxima (Rimu)cmacmaB088
CmaCh12G011620CmaCh11G004930Cucurbita maxima (Rimu)cmacmaB124
CmaCh12G011620CmaCh05G012440Cucurbita maxima (Rimu)cmacmaB190
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G011620Silver-seed gourdcarcmaB1074