CmoCh12G011850 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G011850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr12 : 10705577 .. 10708713 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCATTGATTCTGAGTTGAAATTAGTGAGTGTTCGGGGATTTTATAAGCTATGTTTTCGCTGTTCTTCTTCATCCGATGAACTCCATTGATTCTGAGTTGAAATCAGTGAGTGTTTGGGGATTTTATAAGTTATGTTTTCTCTGTTCTTATTCATCTGATGAACTCCATTGATTCTGAGTTAAAATCAGTGCGTGTTCGCGGATTTTACAAGTTGTCTTCTCTCTGTTCTTCTTCATCTGATGAACTCCATTGATTCTGAGTTGAAATCAGTGCGTGTTCGCGGATTTTACAAGTTTTCTCTCTGTTCTTCTTCATCTGATGAACTCCATTGATTCTGAGTTGAAATCAGCGAGTGTTCGAGGATTTTACAAGTTATCTTCTCTCTGTTTTTCTTCATCTGATGAACTCAATTGTTTATCTGCAATTATGCTCTCATTAATCTGCTGAAACTTACAAGTTCTTCAAATTTTGAATCAAAATCTGCTCAAAATCGTCTTCGAATTTATTTCATCTAAATAAACTCGTCGATCCATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGACTCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATGCAAGCAACCGTGATTTCCACCTCACTTCATCTTCTTCACAGGTATCAAAACAAATCTAGAAAATTCCATCACATCCTTCGAATTTTCCGTTTGTTTCCCGGGAAAATCTTGATGAATGATTTCAATTGTATAAGCAACGGTGCTCTTCGAATCACGCTTACCAGGACGAGAAGCTTGGGCAAGCTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGAACGCACAGAAAACCTGAGAATTCAAGGTAATTTCTTCATGAACCACCTTATTTCTTCATAATTTTGTTTCATCTTTTATATATATATATATATAATAGTAATTAAAATATTATTTTAGTTGATTTTTGTCCTATGATATCCCAAGTTGATTGGGGAGGAGAACGAAACACCCTTACAAGGGTGTGGAAACCTTTCACTAATAGATGTGTTGTCAACTTCTCCCTACCTGATAGTTATATATGCAGTAAGCCGTTGTTGTTGCATTTTGCTTACATTCTCATATATAACACTAATTTCAATTTTTCAAATTTTACTTTCGAAATCTCTCTGTCCTGATTTTCTAAAACTTTCTTCTTGAACCGAGCTCAAAGGCTCGAGCATACGTCGCTTGACCGTAGGAATTTCAATTTTTCAAATCTTACTTTCGAAGTCTCTCTGCCCCTGTTTTCTAAAACTTTCTTCTTGAACCGAGGCCAAAGTCTCGAGCATACGTCGCTTGACCATAGGCGACGCAAGAACGAATAGGCTTAACTCACTTGTTGCTAGAAAGTGAGTGCTACCTTTTGCTTACATTCCCATATATAACACCAATTTCAATTTTTCAAATATTATTTTTGAAATCTCTCTGCCCCTATTTTCTAAAACTTTTTTCTTAAATCGAGGCTAAAGGCTCGAGCATACGTCGCTTGACCATAGGGCGATGCAAGAACGAATAGGTTTAACTCACTTGTTGTTGGAAAGTAAGTGCAACACAATCGCAAATCCACTGCCACCAAACAACCGCTTACTGCATATAACTATGGGGTAGGGGATATGACTAGCCTAAGCAAGATAATATCTGTTAGTTGTGGGGTTAGGTTGTTATACTTGAATTTCTAATTTTAGTTTATATAGTTTAATTATTTGATAATTTTTTTTTAAAAGGAAGTAGTTTACATTAATTTTCCTTGGAGCCTAAATCATTTGGTCTTTTAAGCATATAAATTGTTATTATTCTTATTTAAAAATTTAACTTTTAACTTACTAATTTTAAAAATATTTTAATCATATTTGAACTAAAATTAAGTAAGTAAAGAAAATAAAAACTATAAAAATTATTATTATTATTATTATTATTATTTTGTCTTCTATATTGATGACAATAAATGGGGGTTTTCGTGCATAATTAATTAAATTAAAAGTTTAAAGGTATAATTATAACACGAAACAAAAGTTGAAGGAGTTGATTGCAACCCGTAACAAAGTTTAGGGATTAATTGGTCAAATGTTTGTTTTAATTATTAAAACTTTAGGGTTAGAAAAAAAAACTAATTAAATCATTGTATTAATTTTCATTAAATTGAACTTAAATATAAATTTATAGCACTTGACCTAAAAAGAAGAAAGAAATATGAAAGATACATTTTTATATAAAAATTTAATAATAAAAATAAAAGAAAAAACCCTCCGAATAAATATGAAAAAAAAAAGAATTTGAGCATAGTTCAATTGATTATATATATTTTATCAAAAGATAAAATAGATGTAGCTACCGTTCCTATAATTTAAGCTTAATTTCAATTTGGTCCCTAGAATTTTAAAAGTTTCAATTTAGTCTCTAATTTGATTAAACCTTACAAATCGTCCCTAAACTATATTCGATAGCCATTTAAAAATCTAATTCACTTCTGTTTATTTTTACTCGACCCTATAATTTAATCCCGACAACTAACGAATTAGCTACTTGAAGGCTCTACTAAATTATCACAATAGAACTAATTCAAAATTTTTAAATCATGCTCAAACTACGAGAATAACCAAATTTAAAATTAACGTTAAAATCTATTAATTTTCTTTTTGAATTATAGGAAGAAGAGTAGTAGTGAAGAAGTAGGATTGAAGAAGGAGAAAGCGAAGGGAAAGGAAGAAACAACAACGAAGAAGAGGTTCGGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAGGAAGAGTGCACTGTTTGTCTCGAAAAGTTCAGAGCGACCGAGCCACTAGTCCATCTTCCATGCGCTCACAAGTTCCACTCCGCCTGTTTGGTCCCTTGGCTCCAAGCTAATGCTTATTGTCCTTGTTGTAGGTACCCTATTCTCGCTCAATAACAAACGAGAAGTTATTCGAATAAATTAAAATAATATGAGTAGCAGTTTTCCATTGTAGATGTACGAGAGACAAATAAAAAATTAAAAATGACCAAACGGGACCTAAATTATTGTCGGAGAAAATTTTCG

mRNA sequence

CTCCATTGATTCTGAGTTGAAATTAGTGAGTGTTCGGGGATTTTATAAGCTATGTTTTCGCTGTTCTTCTTCATCCGATGAACTCCATTGATTCTGAGTTGAAATCAGTGAGTGTTTGGGGATTTTATAAGTTATGTTTTCTCTGTTCTTATTCATCTGATGAACTCCATTGATTCTGAGTTAAAATCAGTGCGTGTTCGCGGATTTTACAAGTTGTCTTCTCTCTGTTCTTCTTCATCTGATGAACTCCATTGATTCTGAGTTGAAATCAGTGCGTGTTCGCGGATTTTACAAGTTTTCTCTCTGTTCTTCTTCATCTGATGAACTCCATTGATTCTGAGTTGAAATCAGCGAGTGTTCGAGGATTTTACAAGTTATCTTCTCTCTGTTTTTCTTCATCTGATGAACTCAATTGTTTATCTGCAATTATGCTCTCATTAATCTGCTGAAACTTACAAGTTCTTCAAATTTTGAATCAAAATCTGCTCAAAATCGTCTTCGAATTTATTTCATCTAAATAAACTCGTCGATCCATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGACTCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATGCAAGCAACCGTGATTTCCACCTCACTTCATCTTCTTCACAGCAACGGTGCTCTTCGAATCACGCTTACCAGGACGAGAAGCTTGGGCAAGCTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGAACGCACAGAAAACCTGAGAATTCAAGGAAGAAGAGTAGTAGTGAAGAAGTAGGATTGAAGAAGGAGAAAGCGAAGGGAAAGGAAGAAACAACAACGAAGAAGAGGTTCGGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAGGAAGAGTGCACTGTTTGTCTCGAAAAGTTCAGAGCGACCGAGCCACTAGTCCATCTTCCATGCGCTCACAAGTTCCACTCCGCCTGTTTGGTCCCTTGGCTCCAAGCTAATGCTTATTGTCCTTGTTGTAGGTACCCTATTCTCGCTCAATAACAAACGAGAAGTTATTCGAATAAATTAAAATAATATGAGTAGCAGTTTTCCATTGTAGATGTACGAGAGACAAATAAAAAATTAAAAATGACCAAACGGGACCTAAATTATTGTCGGAGAAAATTTTCG

Coding sequence (CDS)

ATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGACTCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATGCAAGCAACCGTGATTTCCACCTCACTTCATCTTCTTCACAGCAACGGTGCTCTTCGAATCACGCTTACCAGGACGAGAAGCTTGGGCAAGCTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGAACGCACAGAAAACCTGAGAATTCAAGGAAGAAGAGTAGTAGTGAAGAAGTAGGATTGAAGAAGGAGAAAGCGAAGGGAAAGGAAGAAACAACAACGAAGAAGAGGTTCGGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAGGAAGAGTGCACTGTTTGTCTCGAAAAGTTCAGAGCGACCGAGCCACTAGTCCATCTTCCATGCGCTCACAAGTTCCACTCCGCCTGTTTGGTCCCTTGGCTCCAAGCTAATGCTTATTGTCCTTGTTGTAGGTACCCTATTCTCGCTCAATAA
Homology
[Close]
BLAST of CmoCh12G011850 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 134 SEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           SE  +C++CLE F   + L+ LPC H FHS+CL PWL+A   CPCCR  I
Sbjct: 198 SEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]
BLAST of CmoCh12G011850 vs. Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1 

Query: 135 EQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           E+ ECT+C+E F+  + ++ LPC H FH  C+ PWL+ N  C  CR P+
Sbjct: 392 EEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440

[Close]
BLAST of CmoCh12G011850 vs. Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.8e-08
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 1 

Query: 138 ECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           +C VCL +F   E  + +PC H FHS+C++PWL     CP CRY +
Sbjct: 75  KCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYEL 120

[Close]
BLAST of CmoCh12G011850 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 

Query: 138 ECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           +C VCL +F A E ++ +PC H FHS C++PWL     CP CR+ +
Sbjct: 87  KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132

[Close]
BLAST of CmoCh12G011850 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1 

Query: 134 SEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           SE  +C VC+++F     +  +PC H FH  CL+PWL+ +  CP CR+ +
Sbjct: 211 SEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of CmoCh12G011850 vs. TrEMBL
Match: A0A0A0LG47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-70
Identity = 150/197 (76.14%), Postives = 164/197 (83.25%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFHQSI SSDS  TA K GSTRR SFCLY SNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSSSEEV----------GLKKE 120
             +N AYQ++KLG+ AREAKERLDERLRTHRKPENSRKK+++EEV          G KKE
Sbjct: 61  SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEKKE 120

Query: 121 --KAKGKEETTTKKRFGWG-KLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACL 180
               KGKEE T KKRF WG KLMKWKASEQEEC+VCLE+FR +EPL+HLPCAHKFHS CL
Sbjct: 121 MKNTKGKEEET-KKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTCL 180

Query: 181 VPWLQANAYCPCCRYPI 184
           VPWLQANA+CPCCR+PI
Sbjct: 181 VPWLQANAHCPCCRFPI 196

[Close]
BLAST of CmoCh12G011850 vs. TrEMBL
Match: A0A061GN77_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.2e-49
Identity = 117/194 (60.31%), Postives = 139/194 (71.65%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHLTSSSSQQRC 60
           MAGMLPGVECARRRRFHQS  +SDS ST   +G TRRSSFCLY SN + H +S SSQQR 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSNHETHHSSVSSQQRS 60

Query: 61  SSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSS---------SEEVGLKKEKA 120
             N A QDEKLG+ AREAKERLDERLR+ RK E  R+ S          S   G   ++ 
Sbjct: 61  ILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKRQNSKESLRCVDGRSMVQGEFHKEV 120

Query: 121 KGKEETTTKKRFGWGKLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQ 180
            G +++ TK RF W KL  WKAS+QEEC +CLE+F+A E LVHLPCAH+FHS CL+PW++
Sbjct: 121 FGPKKSGTK-RFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPWVE 180

Query: 181 ANAYCPCCRYPILA 186
            NA+CPCCR  IL+
Sbjct: 181 NNAHCPCCRMGILS 191

[Close]
BLAST of CmoCh12G011850 vs. TrEMBL
Match: F6HCI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 120/193 (62.18%), Postives = 133/193 (68.91%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRD-FHLTSSSSQQR 60
           MAGMLPGVECARRRRFHQS   SDS  T A  G TRRSSFCLY SN +  H TSSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDS-PTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  CSSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSSSEEVGLKKEKAKGKEETTT 120
              N AY DEKLG  AREAKERLDERLRT RK E +R K S E + +   +A    E  T
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNK-SKESLRIVDGRAMVVGELQT 120

Query: 121 K---------KRFGWGKLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWL 180
           +         KRF WGKL  WKAS+Q EC +CLE F+A E LVHLPCAH+FHS CL+PWL
Sbjct: 121 EVFGSKRSGSKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLMPWL 180

Query: 181 QANAYCPCCRYPI 184
           + NA+CPCCR  I
Sbjct: 181 ETNAHCPCCRMGI 190

[Close]
BLAST of CmoCh12G011850 vs. TrEMBL
Match: A0A0D2PA85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 114/196 (58.16%), Postives = 137/196 (69.90%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHLTSSSSQQRC 60
           MAGMLPGVECARRRRFHQS  SSDS+S A  +G TRRSSFCLY SN + H +S SSQQR 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAV-IGLTRRSSFCLYTSNNETHHSSVSSQQRS 60

Query: 61  SSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSSSEEVGLK----KEKAKGKEE 120
               ++QD+KLG  AREAKERLDERLR+ RK   S  K  S + G+K    K   +G+  
Sbjct: 61  ILTQSFQDDKLGGVAREAKERLDERLRSQRK---SEPKRHSNKEGMKCVDGKSLVQGELR 120

Query: 121 T-------TTKKRFGWGKLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPW 180
           T       +  KRF W KL  WKAS+Q+EC +CLE+F+  E LVH PCAH+FHS CLVPW
Sbjct: 121 TEVFGSKKSASKRFSWAKL-NWKASDQDECAICLERFKVDESLVHPPCAHRFHSRCLVPW 180

Query: 181 LQANAYCPCCRYPILA 186
           L+ +A+CPCCR  IL+
Sbjct: 181 LENHAHCPCCRMGILS 191

[Close]
BLAST of CmoCh12G011850 vs. TrEMBL
Match: A0A0B0NAG0_GOSAR (Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 115/196 (58.67%), Postives = 135/196 (68.88%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHLTSSSSQQRC 60
           MAGMLPGVECARRRRFHQS  SSDS+S A  +G TRRSSFCLY SN + H +S SSQQR 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAV-IGLTRRSSFCLYTSNNETHHSSVSSQQRS 60

Query: 61  SSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSSSEEVGLK----KEKAKGKEE 120
                YQD+KLG  AREAKERLDERLR+ RK   S  K  S + G+K    K   +G+  
Sbjct: 61  ILTQTYQDDKLGGVAREAKERLDERLRSQRK---SEPKRHSNKEGMKCVDGKSLVQGELR 120

Query: 121 T-------TTKKRFGWGKLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPW 180
           T       +  KRF W KL  WKAS+Q EC +CLE+F+  E LVH PCAH+FHS CLVPW
Sbjct: 121 TEVFGSKKSASKRFSWAKL-NWKASDQVECAICLERFKVDESLVHPPCAHRFHSRCLVPW 180

Query: 181 LQANAYCPCCRYPILA 186
           L+ +A+CPCCR  IL+
Sbjct: 181 LENHAHCPCCRMGILS 191

[Close]
BLAST of CmoCh12G011850 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 2.4e-35
Identity = 95/195 (48.72%), Postives = 119/195 (61.03%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQS---ITSSDSASTAAKLGS--TRRSSFCLYASNRDFHLTSSS 60
           MAGMLPGVECARRRRFH     I SS++AS AA  G   TRR SF LY +N + H    S
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SQQRCSSNHAY---QDEKLGQAAREAKERLDERLRTH-RKPENSRKKSSSEEVGLKKEKA 120
             +R   N +Y    DEKL  AA+EAK+RL++RLR   R  +N + K +  E G  K   
Sbjct: 61  FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTRQNGKDKGNKLEQGKGKPLG 120

Query: 121 KGKEETTTKKRFGWGKLMKW---KASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVP 180
               E    K+   G+LM+W   +  EQ++C +CL++F+  E LVHLPCAHKFHS CL+P
Sbjct: 121 DLPTEVVGLKK-SRGRLMEWFKRRVREQQDCAICLDRFKKGETLVHLPCAHKFHSICLLP 180

Query: 181 WLQANAYCPCCRYPI 184
           WL  N YCP CR  I
Sbjct: 181 WLDTNVYCPYCRTDI 194

[Close]
BLAST of CmoCh12G011850 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 134 SEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           SE  +C++CLE F   + L+ LPC H FHS+CL PWL+A   CPCCR  I
Sbjct: 198 SEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]
BLAST of CmoCh12G011850 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-10
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1 

Query: 132 KASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPILA 186
           K  E  +C+VCL+ F        +PC HKFHS CL+PWL+ ++ CP CRY + A
Sbjct: 216 KIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPA 269

[Close]
BLAST of CmoCh12G011850 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-10
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 

Query: 132 KASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           K SE  +C++CL+ F        +PC HKFH  C+VPWL+ ++ CP CRY +
Sbjct: 234 KISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCRYEL 285

[Close]
BLAST of CmoCh12G011850 vs. TAIR10
Match: AT3G13228.1 (AT3G13228.1 RING/U-box superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-10
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 

Query: 137 EECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQANAYCPCCRYPI 184
           E CT+CLE+F A   LV LPC H F   C V W + N +CP CRY +
Sbjct: 273 ERCTICLEEFNAGGILVALPCGHDFDDECAVKWFETNHFCPLCRYEL 319

[Close]
BLAST of CmoCh12G011850 vs. NCBI nr
Match: gi|449442999|ref|XP_004139268.1| (PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.6e-70
Identity = 150/197 (76.14%), Postives = 164/197 (83.25%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFHQSI SSDS  TA K GSTRR SFCLY SNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSSSEEV----------GLKKE 120
             +N AYQ++KLG+ AREAKERLDERLRTHRKPENSRKK+++EEV          G KKE
Sbjct: 61  SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSRKKNNNEEVKGKESREKNNGEKKE 120

Query: 121 --KAKGKEETTTKKRFGWG-KLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACL 180
               KGKEE T KKRF WG KLMKWKASEQEEC+VCLE+FR +EPL+HLPCAHKFHS CL
Sbjct: 121 MKNTKGKEEET-KKRFSWGRKLMKWKASEQEECSVCLERFRLSEPLLHLPCAHKFHSTCL 180

Query: 181 VPWLQANAYCPCCRYPI 184
           VPWLQANA+CPCCR+PI
Sbjct: 181 VPWLQANAHCPCCRFPI 196

[Close]
BLAST of CmoCh12G011850 vs. NCBI nr
Match: gi|659070796|ref|XP_008456717.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 4.9e-67
Identity = 143/194 (73.71%), Postives = 158/194 (81.44%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFH SI SSDS STAAK GSTRR SFCLY SNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSSSEEVGLKKEK--------- 120
             +N A+Q+EKLG+ AREAKERLDERLRTHRKPENS K S +EEV  K+ +         
Sbjct: 61  SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSSKNSKNEEVKWKESREKNNGERKE 120

Query: 121 ---AKGKEETTTKKRFGWG-KLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACL 180
               KGKEE T +KRF WG KLMKWKASEQ+EC+VCLE+FR+ EPL+HLPCAHKFHS CL
Sbjct: 121 MRSTKGKEEET-RKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHSTCL 180

[Close]
BLAST of CmoCh12G011850 vs. NCBI nr
Match: gi|659070794|ref|XP_008456709.1| (PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.9e-66
Identity = 144/195 (73.85%), Postives = 160/195 (82.05%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHL-TSSSSQQR 60
           MAGMLPGVECARRRRFH SI SSDS STAAK GSTRR SFCLY SNRDFHL +SSSSQQR
Sbjct: 1   MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61  CSSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSS-SEEVGLKKEK-------- 120
             +N A+Q+EKLG+ AREAKERLDERLRTHRKPENSR K+S +EEV  K+ +        
Sbjct: 61  SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSRSKNSKNEEVKWKESREKNNGERK 120

Query: 121 ----AKGKEETTTKKRFGWG-KLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSAC 180
                KGKEE T +KRF WG KLMKWKASEQ+EC+VCLE+FR+ EPL+HLPCAHKFHS C
Sbjct: 121 EMRSTKGKEEET-RKRFSWGRKLMKWKASEQDECSVCLERFRSGEPLLHLPCAHKFHSTC 180

[Close]
BLAST of CmoCh12G011850 vs. NCBI nr
Match: gi|590579073|ref|XP_007013686.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 203.0 bits (515), Expect = 4.6e-49
Identity = 117/194 (60.31%), Postives = 139/194 (71.65%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHLTSSSSQQRC 60
           MAGMLPGVECARRRRFHQS  +SDS ST   +G TRRSSFCLY SN + H +S SSQQR 
Sbjct: 1   MAGMLPGVECARRRRFHQSGGASDSPSTVP-IGWTRRSSFCLYTSNHETHHSSVSSQQRS 60

Query: 61  SSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSS---------SEEVGLKKEKA 120
             N A QDEKLG+ AREAKERLDERLR+ RK E  R+ S          S   G   ++ 
Sbjct: 61  ILNQANQDEKLGEVAREAKERLDERLRSQRKSEPKRQNSKESLRCVDGRSMVQGEFHKEV 120

Query: 121 KGKEETTTKKRFGWGKLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWLQ 180
            G +++ TK RF W KL  WKAS+QEEC +CLE+F+A E LVHLPCAH+FHS CL+PW++
Sbjct: 121 FGPKKSGTK-RFSWAKL-SWKASDQEECAICLERFKAGETLVHLPCAHRFHSRCLIPWVE 180

Query: 181 ANAYCPCCRYPILA 186
            NA+CPCCR  IL+
Sbjct: 181 NNAHCPCCRMGILS 191

[Close]
BLAST of CmoCh12G011850 vs. NCBI nr
Match: gi|225463022|ref|XP_002266038.1| (PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera])

HSP 1 Score: 200.3 bits (508), Expect = 3.0e-48
Identity = 120/193 (62.18%), Postives = 133/193 (68.91%), Query Frame = 1 

Query: 1   MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRD-FHLTSSSSQQR 60
           MAGMLPGVECARRRRFHQS   SDS  T A  G TRRSSFCLY SN +  H TSSSS QR
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDS-PTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQR 60

Query: 61  CSSNHAYQDEKLGQAAREAKERLDERLRTHRKPENSRKKSSSEEVGLKKEKAKGKEETTT 120
              N AY DEKLG  AREAKERLDERLRT RK E +R K S E + +   +A    E  T
Sbjct: 61  SVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNK-SKESLRIVDGRAMVVGELQT 120

Query: 121 K---------KRFGWGKLMKWKASEQEECTVCLEKFRATEPLVHLPCAHKFHSACLVPWL 180
           +         KRF WGKL  WKAS+Q EC +CLE F+A E LVHLPCAH+FHS CL+PWL
Sbjct: 121 EVFGSKRSGSKRFSWGKL-SWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLMPWL 180

Query: 181 QANAYCPCCRYPI 184
           + NA+CPCCR  I
Sbjct: 181 ETNAHCPCCRMGI 190

The following BLAST results are available for this feature:
BLAST of CmoCh12G011850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHY1A_ARATH6.5e-1154.00Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2... [more]
YKW3_SCHPO2.1e-0944.90Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra... [more]
RN181_HUMAN8.8e-0845.65E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1[more]
RN181_MOUSE1.1e-0745.65E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1[more]
RNG1L_ARATH1.1e-0740.00E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
BLAST of CmoCh12G011850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG47_CUCSA1.1e-7076.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009360 PE=4 SV=1[more]
A0A061GN77_THECC3.2e-4960.31RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_038262 PE=4 SV=1[more]
F6HCI8_VITVI2.1e-4862.18Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=... [more]
A0A0D2PA85_GOSRA2.3e-4758.16Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1[more]
A0A0B0NAG0_GOSAR3.0e-4758.67Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1[more]
BLAST of CmoCh12G011850 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15580.12.4e-3548.72 RING/U-box superfamily protein[more]
AT1G49850.13.7e-1254.00 RING/U-box superfamily protein[more]
AT1G55530.13.4e-1046.30 RING/U-box superfamily protein[more]
AT4G26400.23.4e-1044.23 RING/U-box superfamily protein[more]
AT3G13228.15.8e-1051.06 RING/U-box superfamily protein[more]
BLAST of CmoCh12G011850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442999|ref|XP_004139268.1|1.6e-7076.14PREDICTED: RING-H2 finger protein ATL16 [Cucumis sativus][more]
gi|659070796|ref|XP_008456717.1|4.9e-6773.71PREDICTED: RING-H2 finger protein ATL16 isoform X2 [Cucumis melo][more]
gi|659070794|ref|XP_008456709.1|1.9e-6673.85PREDICTED: RING-H2 finger protein ATL16 isoform X1 [Cucumis melo][more]
gi|590579073|ref|XP_007013686.1|4.6e-4960.31RING/U-box superfamily protein [Theobroma cacao][more]
gi|225463022|ref|XP_002266038.1|3.0e-4862.18PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G011850.1CmoCh12G011850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 138..180
score: 2.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 139..179
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 139..180
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 134..183
score: 1.3
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 126..183
score: 5.2E-35coord: 71..108
score: 5.2
NoneNo IPR availablePANTHERPTHR22763:SF49SUBFAMILY NOT NAMEDcoord: 126..183
score: 5.2E-35coord: 71..108
score: 5.2
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 127..185
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G011850Cucsa.132720Cucumber (Gy14) v1cgycmoB0359
CmoCh12G011850CmaCh05G012440Cucurbita maxima (Rimu)cmacmoB763
CmoCh12G011850CmaCh12G011620Cucurbita maxima (Rimu)cmacmoB177
CmoCh12G011850Cla013602Watermelon (97103) v1cmowmB156
CmoCh12G011850Cla018695Watermelon (97103) v1cmowmB169
CmoCh12G011850Csa1G265120Cucumber (Chinese Long) v2cmocuB147
CmoCh12G011850Csa2G009360Cucumber (Chinese Long) v2cmocuB157
CmoCh12G011850MELO3C010264Melon (DHL92) v3.5.1cmomeB145
CmoCh12G011850MELO3C004441Melon (DHL92) v3.5.1cmomeB161
CmoCh12G011850ClCG02G017240Watermelon (Charleston Gray)cmowcgB144
CmoCh12G011850ClCG06G012030Watermelon (Charleston Gray)cmowcgB156
CmoCh12G011850CSPI01G17250Wild cucumber (PI 183967)cmocpiB146
CmoCh12G011850CSPI02G02370Wild cucumber (PI 183967)cmocpiB159
CmoCh12G011850Lsi06G010550Bottle gourd (USVL1VR-Ls)cmolsiB173
CmoCh12G011850Lsi11G003860Bottle gourd (USVL1VR-Ls)cmolsiB148
CmoCh12G011850Cp4.1LG11g10360Cucurbita pepo (Zucchini)cmocpeB147
CmoCh12G011850Cp4.1LG04g08890Cucurbita pepo (Zucchini)cmocpeB169
CmoCh12G011850Cp4.1LG07g11020Cucurbita pepo (Zucchini)cmocpeB178
CmoCh12G011850MELO3C010264.2Melon (DHL92) v3.6.1cmomedB160
CmoCh12G011850MELO3C004441.2Melon (DHL92) v3.6.1cmomedB177
CmoCh12G011850CsaV3_2G003550Cucumber (Chinese Long) v3cmocucB0185
CmoCh12G011850CsaV3_1G028490Cucumber (Chinese Long) v3cmocucB0171
CmoCh12G011850Cla97C06G121210Watermelon (97103) v2cmowmbB173
CmoCh12G011850Cla97C02G042930Watermelon (97103) v2cmowmbB161
CmoCh12G011850Bhi06G001575Wax gourdcmowgoB0171
CmoCh12G011850CsGy2G002450Cucumber (Gy14) v2cgybcmoB170
CmoCh12G011850Carg23020Silver-seed gourdcarcmoB1441
CmoCh12G011850Carg17455Silver-seed gourdcarcmoB0356
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G011850CmoCh11G004920Cucurbita moschata (Rifu)cmocmoB084
CmoCh12G011850CmoCh05G012720Cucurbita moschata (Rifu)cmocmoB148
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G011850Cucumber (Gy14) v1cgycmoB0959
CmoCh12G011850Cucurbita maxima (Rimu)cmacmoB123