CmoCh10G005270 (gene) Cucurbita moschata (Rifu)

NameCmoCh10G005270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc/RING finger 3
LocationCmo_Chr10 : 2398058 .. 2399251 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAATTTCATGGCACCTTCGCGCCTCCTTCCGCGCACTTTCCTCCTCCTTCCAGTGCCGATGGAGTCAATGCAATCAATCTGTACTTAATCACTTCTCTCTCCGCCTCCTCAGCCAGAAAAGCCCTAGATCCGTGCAGAAATTTCAACTTTCAAGGTTTCCAAAGTTTCTCCAATGGCCGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCAAATCCATCTCTGGTTCGTAAATCGCATCTCGTTCTGTCGATGAAATCCGAGTGTATTGATTCAATTGATTCGATTTTAACTGATAATTTTGCAGGAAAGAAGCCTGTTAATCGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGGTACTGAAAACGATAACAACACAGATCGATTAACACTTCGTTTGATTTAATCTCAATCATAAAGATCGATTCCTGGTTTTCCATGGTTCGAAATAATGAAATATTCACGATCTGATGCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAGCAAGACAAGTGCGGCCAGTGCTGGTGAAGAACACGACTTCATTTCAGTGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCATAAACACGGCTTAAAATTCATAAAAACTCAAACTGTTCATGTTTGGATTCATTAATTATTTATGAATCTATCAATTGTATGTTGGATGATGAAATGGATGATGAAACCGCTAATTTAGAGAATGATTTCAAAGAATACTCTCTCAATTGGTGTGAGGTTTTTTGGGTTGGAATACTCTCTATTGGTGTGAGACTTTTTTGGGGAGCCTAAAGCAAAGTCATGAGAGCTTATACTCGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTTATCTAACACGATGTCGTACCATTGTGGAGAGTCGTGTTCATCTAACATAACAATATCATAC

mRNA sequence

GTAATTTCATGGCACCTTCGCGCCTCCTTCCGCGCACTTTCCTCCTCCTTCCAGTGCCGATGGAGTCAATGCAATCAATCTGTACTTAATCACTTCTCTCTCCGCCTCCTCAGCCAGAAAAGCCCTAGATCCGTGCAGAAATTTCAACTTTCAAGGTTTCCAAAGTTTCTCCAATGGCCGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCAAATCCATCTCTGGAAAGAAGCCTGTTAATCGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAGCAAGACAAGTGCGGCCAGTGCTGGTGAAGAACACGACTTCATTTCAGTGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCATAAACACGGCTTAAAATTCATAAAAACTCAAACTGTTCATGTTTGGATTCATTAATTATTTATGAATCTATCAATTGTATGTTGGATGATGAAATGGATGATGAAACCGCTAATTTAGAGAATGATTTCAAAGAATACTCTCTCAATTGGTGTGAGGTTTTTTGGGTTGGAATACTCTCTATTGGTGTGAGACTTTTTTGGGGAGCCTAAAGCAAAGTCATGAGAGCTTATACTCGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTTATCTAACACGATGTCGTACCATTGTGGAGAGTCGTGTTCATCTAACATAACAATATCATAC

Coding sequence (CDS)

ATGGCCGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCAAATCCATCTCTGGAAAGAAGCCTGTTAATCGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAGCAAGACAAGTGCGGCCAGTGCTGGTGA
BLAST of CmoCh10G005270 vs. TrEMBL
Match: A0A0A0LWJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G265120 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.7e-41
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAG LPGVECARRRRCHQN +WSDSP IAAQ LTRRSVLCLYTSN+E LL SNPS+ER L
Sbjct: 1   MAGTLPGVECARRRRCHQNSIWSDSPLIAAQVLTRRSVLCLYTSNNEALLFSNPSMERRL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDER-LRTQRKS----RKFNWTKLNWTKLNWTGVEQDKCG 118
           L+EA+ +D+LDG AREAKRRLDER LRTQRKS    R+    K +W KLNW GVE+DKCG
Sbjct: 61  LMEAEGEDELDGIAREAKRRLDERLLRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of CmoCh10G005270 vs. TrEMBL
Match: A0A0D2PA85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-23
Identity = 70/148 (47.30%), Postives = 85/148 (57.43%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  +A   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 118
           L ++ +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQSFQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

BLAST of CmoCh10G005270 vs. TrEMBL
Match: A0A0B0NAG0_GOSAR (Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-22
Identity = 69/148 (46.62%), Postives = 83/148 (56.08%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  +A   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 118
           L +  +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQTYQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

BLAST of CmoCh10G005270 vs. TrEMBL
Match: F6HCI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 69/149 (46.31%), Postives = 84/149 (56.38%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLA-SNPSLERS 60
           MAGMLPGVECARRRR HQ+   SDSP +A    TRRS  CLYTSNHE   A S+ S++RS
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSPTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQRS 60

Query: 61  LLIEADEDDKLDGSAREAKRRLDERLRTQRK----------------------------- 118
           +L +A  D+KL G AREAK RLDERLRTQRK                             
Sbjct: 61  VLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTEV 120

BLAST of CmoCh10G005270 vs. TrEMBL
Match: A5ASH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 69/149 (46.31%), Postives = 84/149 (56.38%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLA-SNPSLERS 60
           MAGMLPGVECARRRR HQ+   SDSP +A    TRRS  CLYTSNHE   A S+ S++RS
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSPTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQRS 60

Query: 61  LLIEADEDDKLDGSAREAKRRLDERLRTQRK----------------------------- 118
           +L +A  D+KL G AREAK RLDERLRTQRK                             
Sbjct: 61  VLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTEV 120

BLAST of CmoCh10G005270 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-13
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETLLASNP 60
           MAGMLPGVECARRRR H      +S + A+ A       TRR    LYT+NHE+  A   
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SLERSLLIEA---DEDDKLDGSAREAKRRLDERLRTQRKSRK 94
             ERS+  ++   D D+KLDG+A+EAK+RL++RLR   ++R+
Sbjct: 61  FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTRQ 102

BLAST of CmoCh10G005270 vs. NCBI nr
Match: gi|659086379|ref|XP_008443904.1| (PREDICTED: uncharacterized protein LOC103487385 isoform X1 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 92/123 (74.80%), Postives = 102/123 (82.93%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRSVLCLYTSNHE LL SNPS++R L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMQRRL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFNWTKLNWTKLNWTGVEQDKCG 119
           L+EA  +D+LDG AREAKRRLDERL RTQRKS    R+    K +W KLNW GVE+DKCG
Sbjct: 61  LMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of CmoCh10G005270 vs. NCBI nr
Match: gi|659086381|ref|XP_008443905.1| (PREDICTED: uncharacterized protein LOC103487385 isoform X2 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 4.5e-42
Identity = 92/123 (74.80%), Postives = 101/123 (82.11%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRSVLCLYTSNHE LL SNPS+ R L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMRR-L 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFNWTKLNWTKLNWTGVEQDKCG 119
           L+EA  +D+LDG AREAKRRLDERL RTQRKS    R+    K +W KLNW GVE+DKCG
Sbjct: 61  LMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of CmoCh10G005270 vs. NCBI nr
Match: gi|449457937|ref|XP_004146704.1| (PREDICTED: uncharacterized protein LOC101215379 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 3.8e-41
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAG LPGVECARRRRCHQN +WSDSP IAAQ LTRRSVLCLYTSN+E LL SNPS+ER L
Sbjct: 1   MAGTLPGVECARRRRCHQNSIWSDSPLIAAQVLTRRSVLCLYTSNNEALLFSNPSMERRL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDER-LRTQRKS----RKFNWTKLNWTKLNWTGVEQDKCG 118
           L+EA+ +D+LDG AREAKRRLDER LRTQRKS    R+    K +W KLNW GVE+DKCG
Sbjct: 61  LMEAEGEDELDGIAREAKRRLDERLLRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of CmoCh10G005270 vs. NCBI nr
Match: gi|823149208|ref|XP_012474474.1| (PREDICTED: RING finger protein 165-like [Gossypium raimondii])

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-23
Identity = 70/148 (47.30%), Postives = 85/148 (57.43%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  +A   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 118
           L ++ +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQSFQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

BLAST of CmoCh10G005270 vs. NCBI nr
Match: gi|728828628|gb|KHG08071.1| (Zinc/RING finger 3 [Gossypium arboreum])

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-22
Identity = 69/148 (46.62%), Postives = 83/148 (56.08%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  +A   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 118
           L +  +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQTYQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWJ8_CUCSA2.7e-4174.59Uncharacterized protein OS=Cucumis sativus GN=Csa_1G265120 PE=4 SV=1[more]
A0A0D2PA85_GOSRA1.5e-2347.30Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1[more]
A0A0B0NAG0_GOSAR2.1e-2246.62Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1[more]
F6HCI8_VITVI3.6e-2246.31Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=... [more]
A5ASH9_VITVI3.6e-2246.31Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G15580.11.2e-1347.06 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659086379|ref|XP_008443904.1|1.8e-4374.80PREDICTED: uncharacterized protein LOC103487385 isoform X1 [Cucumis melo][more]
gi|659086381|ref|XP_008443905.1|4.5e-4274.80PREDICTED: uncharacterized protein LOC103487385 isoform X2 [Cucumis melo][more]
gi|449457937|ref|XP_004146704.1|3.8e-4174.59PREDICTED: uncharacterized protein LOC101215379 [Cucumis sativus][more]
gi|823149208|ref|XP_012474474.1|2.1e-2347.30PREDICTED: RING finger protein 165-like [Gossypium raimondii][more]
gi|728828628|gb|KHG08071.1|3.0e-2246.62Zinc/RING finger 3 [Gossypium arboreum][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G005270.1CmoCh10G005270.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G005270Cucsa.132720Cucumber (Gy14) v1cgycmoB0354
CmoCh10G005270CmaCh10G004940Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G005270CmaCh11G004930Cucurbita maxima (Rimu)cmacmoB099
CmoCh10G005270CmaCh12G011620Cucurbita maxima (Rimu)cmacmoB170
CmoCh10G005270Cla018695Watermelon (97103) v1cmowmB063
CmoCh10G005270Csa1G265120Cucumber (Chinese Long) v2cmocuB048
CmoCh10G005270Csa2G009360Cucumber (Chinese Long) v2cmocuB062
CmoCh10G005270MELO3C010264Melon (DHL92) v3.5.1cmomeB049
CmoCh10G005270ClCG06G012030Watermelon (Charleston Gray)cmowcgB064
CmoCh10G005270CSPI02G02370Wild cucumber (PI 183967)cmocpiB064
CmoCh10G005270CSPI01G17250Wild cucumber (PI 183967)cmocpiB051
CmoCh10G005270Lsi11G003860Bottle gourd (USVL1VR-Ls)cmolsiB032
CmoCh10G005270Lsi06G010550Bottle gourd (USVL1VR-Ls)cmolsiB052
CmoCh10G005270Cp4.1LG18g05490Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G005270Cp4.1LG04g08890Cucurbita pepo (Zucchini)cmocpeB068
CmoCh10G005270MELO3C010264.2Melon (DHL92) v3.6.1cmomedB052
CmoCh10G005270CsaV3_2G003550Cucumber (Chinese Long) v3cmocucB0068
CmoCh10G005270CsaV3_1G028490Cucumber (Chinese Long) v3cmocucB0054
CmoCh10G005270Cla97C06G121210Watermelon (97103) v2cmowmbB070
CmoCh10G005270BhiUN297G21Wax gourdcmowgoB0049
CmoCh10G005270CsGy2G002450Cucumber (Gy14) v2cgybcmoB144
CmoCh10G005270CsGy1G017460Cucumber (Gy14) v2cgybcmoB014
CmoCh10G005270Carg27183Silver-seed gourdcarcmoB0780
CmoCh10G005270Carg17455Silver-seed gourdcarcmoB0354
CmoCh10G005270Carg09968Silver-seed gourdcarcmoB0172
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh10G005270CmoCh11G004920Cucurbita moschata (Rifu)cmocmoB038