Carg27183 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27183
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase RHY1A
Location	Cucurbita_argyrosperma_scaffold_486 : 8900 .. 9626 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGGTTCGTAAATCGCATCTCGACCTGTCAATGAATTAACAAATTATTCATTCGATTGAGGATGATGAACAGAGCTGATTCGATTTATCGTGTTTTTTTTTTCTTTTGCAGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGGTACTGAAACAACGGCGTCCGGAACAGCCGCGATGAATTTACATTTCGTTAATTTATTAATCATAAAACCTAAACGAAACACATCCAAAATTACTCTTGTAATCTGCGATTGGATGCAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCTT

mRNA sequence

TCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCTT

Coding sequence (CDS)

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGA

Protein sequence

MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGSLLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW

Homology

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_022933256.1 (uncharacterized protein LOC111440241 [Cucurbita moschata])

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 117

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023531367.1 (uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 7.8e-59
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATR+FSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRRFSWTNWIAGEQNNCGQCW 117

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023005576.1 (uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 32  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 91

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 92  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 148

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023005584.1 (uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 21  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 80

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 81  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 137

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023005591.1 (uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 117

[Close]

BLAST of Carg27183 vs. TAIR10
Match: AT2G15580.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-11
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRLHQTKACSDSPPIVATRTL----------TRKSVLCLYTSNHETL 60
          MAGMLPGVECARRRR H       +PPI ++ T           TR+    LYT+NHE+ 
Sbjct: 1  MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61 LASNPSLQGSLLVEAQENDN---LDGIAREAKRRLDERLR 88
           A     + S+  ++   DN   LDG A+EAK+RL++RLR
Sbjct: 61 QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

[Close]

BLAST of Carg27183 vs. TrEMBL
Match: tr|A0A1S3B9W3|A0A1S3B9W3_CUCME (uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487385 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.5e-34
Identity = 85/124 (68.55%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ K  SDSP + A + LTR+SVLCLYTSNHE LL SNPS+Q  
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDA-QVLTRRSVLCLYTSNHEALLVSNPSMQRR 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL----RKSEDK-RGIATRKFSW--TNWIAGEQNNC 118
           LL+EA   D LDGIAREAKRRLDERL    RKSED  R +  RKFSW   NWI  E++ C
Sbjct: 61  LLMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKC 120

[Close]

BLAST of Carg27183 vs. TrEMBL
Match: tr|A0A1S3B9Y1|A0A1S3B9Y1_CUCME (uncharacterized protein LOC103487385 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487385 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-32
Identity = 84/124 (67.74%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ K  SDSP + A + LTR+SVLCLYTSNHE LL SNPS++  
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDA-QVLTRRSVLCLYTSNHEALLVSNPSMR-R 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL----RKSEDK-RGIATRKFSW--TNWIAGEQNNC 118
           LL+EA   D LDGIAREAKRRLDERL    RKSED  R +  RKFSW   NWI  E++ C
Sbjct: 61  LLMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKC 120

[Close]

BLAST of Carg27183 vs. TrEMBL
Match: tr|A0A0A0LWJ8|A0A0A0LWJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265120 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAG LPGVECARRRR HQ    SDS P++A + LTR+SVLCLYTSN+E LL SNPS++  
Sbjct: 1   MAGTLPGVECARRRRCHQNSIWSDS-PLIAAQVLTRRSVLCLYTSNNEALLFSNPSMERR 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL----RKSEDK-RGIATRKFSW--TNWIAGEQNNC 117
           LL+EA+  D LDGIAREAKRRLDERL    RKSED  R +  RKFSW   NWI  E++ C
Sbjct: 61  LLMEAEGEDELDGIAREAKRRLDERLLRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKC 120

[Close]

BLAST of Carg27183 vs. TrEMBL
Match: tr|A0A2I4HNL2|A0A2I4HNL2_9ROSI (probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC109019824 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 67/146 (45.89%), Postives = 79/146 (54.11%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ+ ACSDSP  VA    TR+S  CLY SNHE    S  S + S
Sbjct: 1   MAGMLPGVECARRRRFHQSGACSDSPSTVAALGGTRRSSFCLYRSNHEPQHTSTSSQKRS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL---RKSEDK----------RGIA----------- 117
           LL +   ++NL  +AREAK RLDERL   RKS+ K          R I            
Sbjct: 61  LLNQVYRDENLGEVAREAKERLDERLRTQRKSKTKSTQSLSCVEGRSIVLEELNTEMFGF 120

[Close]

BLAST of Carg27183 vs. TrEMBL
Match: tr|A0A2I4FQA0|A0A2I4FQA0_9ROSI (probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC109001127 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.9e-19
Identity = 66/147 (44.90%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ+ AC+DS   VA    TR+S  CLY SNHE    ++ SL+ S
Sbjct: 1   MAGMLPGVECARRRRFHQSGACADSQITVAAHGGTRRSSFCLYRSNHEPQHHNSTSLKRS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLR-------KSED---------------------- 117
            L +A +++ L  +AREAK RLDERLR       KS++                      
Sbjct: 61  SLNQAHQDEKLGEVAREAKERLDERLRTQRKTNTKSKESMKCVEGRSMVLGELQTEVFGT 120

The following BLAST results are available for this feature:

BLAST of Carg27183 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933256.1	1.2e-59	100.00	uncharacterized protein LOC111440241 [Cucurbita moschata]	[more]
XP_023531367.1	7.8e-59	98.29	uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo]	[more]
XP_023005576.1	3.0e-58	96.58	uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima]	[more]
XP_023005584.1	3.0e-58	96.58	uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima]	[more]
XP_023005591.1	3.0e-58	96.58	uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg27183 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15580.1	3.3e-11	44.00	RING/U-box superfamily protein	[more]

BLAST of Carg27183 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27183 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9W3\|A0A1S3B9W3_CUCME	7.5e-34	68.55	uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B9Y1\|A0A1S3B9Y1_CUCME	3.2e-32	67.74	uncharacterized protein LOC103487385 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LWJ8\|A0A0A0LWJ8_CUCSA	3.5e-31	65.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265120 PE=4 SV=1	[more]
tr\|A0A2I4HNL2\|A0A2I4HNL2_9ROSI	4.0e-19	45.89	probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC10901...	[more]
tr\|A0A2I4FQA0\|A0A2I4FQA0_9ROSI	8.9e-19	44.90	probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC10900...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27183-RA	Carg27183-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 2..98
None	No IPR available	PANTHER	PTHR14155:SF215	SUBFAMILY NOT NAMED	coord: 2..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27183	Cla018695	Watermelon (97103) v1	carwmB0572
Carg27183	Csa1G265120	Cucumber (Chinese Long) v2	carcuB0602
Carg27183	MELO3C010264	Melon (DHL92) v3.5.1	carmeB0578
Carg27183	ClCG06G012030	Watermelon (Charleston Gray)	carwcgB0560
Carg27183	CSPI01G17250	Wild cucumber (PI 183967)	carcpiB0608
Carg27183	CmaCh11G004930	Cucurbita maxima (Rimu)	carcmaB0804
Carg27183	CmaCh10G004940	Cucurbita maxima (Rimu)	carcmaB0803
Carg27183	CmoCh11G004920	Cucurbita moschata (Rifu)	carcmoB0781
Carg27183	CmoCh10G005270	Cucurbita moschata (Rifu)	carcmoB0780
Carg27183	Cp4.1LG18g05490	Cucurbita pepo (Zucchini)	carcpeB0818
Carg27183	Cp4.1LG04g08890	Cucurbita pepo (Zucchini)	carcpeB0819
Carg27183	CsGy1G017460	Cucumber (Gy14) v2	carcgybB0576
Carg27183	MELO3C010264.2	Melon (DHL92) v3.6.1	carmedB0585
Carg27183	CsaV3_1G028490	Cucumber (Chinese Long) v3	carcucB0609
Carg27183	Cla97C06G121210	Watermelon (97103) v2	carwmbB0600

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg27183	Carg09968	Silver-seed gourd	carcarB153

The following block(s) are covering this gene:

None