Carg09968 (gene) Silver-seed gourd

NameCarg09968
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase RHY1A
LocationCucurbita_argyrosperma_scaffold_030 : 732200 .. 733324 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTCCAGTGCCGATGGAGTCAATGCAATAAATCTGTACTTAATCACTTCTCTCTCCGCCTGCTCAGCCAGAAAAGCCCTAGATCCGTGCAGAAATTTCAACTTTCAAGGTTTCCAAAGTTTGTCCAATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCACCTCGCTTCAAATCCATCTCTGGTTCGTAAATCGCATCTCGTTCTGTCGATGAAATCGGAGTGTATTGATTTAATTGATTCGATTTTAACTGTTAATTTTGCAGGAAAGAAGCCTGTTAATTGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGGTACTGAAAACGATAGCAACATAGATCGATTACCATTTCGTTTGATTTAATCTCAATCATAAAGATCGATTACTGGTTTTCCATGGTTCGAAATAATGAAATATTCACGATCTGATGCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAGCAAGACAAGTGCCGCCAGTGCTGGTGAAGAAGACGACTTCATTTCAGTGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCATAAACACGGCTTAAAATTCATAAAAACTCAAACTGTTCATGTTTGGATTCATTAATTATTTATGAATCTATCAATTGTACCTTGGATGATGAAATGGATGATGAAACCCGCTAATTTAGAGAATGATCTCAAAGAATACTCTCTCAATTGGTGTGAGACTTTTTGGGGAACCCAAAGCAAAGTCATGAAAGCTTATGCTCGCTTGGACAATATCATACCATTGTGGAGAGTCGTGTTTATCTAACATGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGACAATATCATACCATTGTGGAG

mRNA sequence

TCCTTCCAGTGCCGATGGAGTCAATGCAATAAATCTGTACTTAATCACTTCTCTCTCCGCCTGCTCAGCCAGAAAAGCCCTAGATCCGTGCAGAAATTTCAACTTTCAAGGTTTCCAAAGTTTGTCCAATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCACCTCGCTTCAAATCCATCTCTGGAAAGAAGCCTGTTAATTGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAGCAAGACAAGTGCCGCCAGTGCTGGTGAAGAAGACGACTTCATTTCAGTGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCATAAACACGGCTTAAAATTCATAAAAACTCAAACTGTTCATGTTTGGATTCATTAATTATTTATGAATCTATCAATTGTACCTTGGATGATGAAATGGATGATGAAACCCGCTAATTTAGAGAATGATCTCAAAGAATACTCTCTCAATTGGTGTGAGACTTTTTGGGGAACCCAAAGCAAAGTCATGAAAGCTTATGCTCGCTTGGACAATATCATACCATTGTGGAGAGTCGTGTTTATCTAACATGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGACAATATCATACCATTGTGGAG

Coding sequence (CDS)

ATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCACCTCGCTTCAAATCCATCTCTGGAAAGAAGCCTGTTAATTGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAGCAAGACAAGTGCCGCCAGTGCTGGTGA

Protein sequence

MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLNWTKLNWTGVEQDKCRQCW
BLAST of Carg09968 vs. NCBI nr
Match: XP_022921934.1 (uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 6.5e-45
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKXXXXXXXXXXXXXXXXXXXEQDKCRQCW 119
           LIEADEDDKLDGSAREAKRRLDERLRTQRKXXXXXXXXXXXXXXXXXXXEQDKC QCW
Sbjct: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKXXXXXXXXXXXXXXXXXXXEQDKCGQCW 118

BLAST of Carg09968 vs. NCBI nr
Match: XP_022921935.1 (uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 103/118 (87.29%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKXXXXXXXXXXXXXXXXXXXEQDKCRQCW 119
           LIEADEDDKLDGSAREAKRRLDERLRTQRK           XXXXXX  EQDKC QCW
Sbjct: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRK-----SRKLNWXXXXXXGVEQDKCGQCW 113

BLAST of Carg09968 vs. NCBI nr
Match: XP_023515554.1 (uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 95/118 (80.51%), Postives = 97/118 (82.20%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNKVWSDSPH+AAQALTRRSVLCLYTSNHET LASNPSLERSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKXXXXXXXXXXXXXXXXXXXEQDKCRQCW 119
           L+EADEDDKLDGSAREAKRRLDERLRTQRK                   EQDKC QCW
Sbjct: 61  LVEADEDDKLDGSAREAKRRLDERLRTQRK-----SRKFNWTKLNWTSVEQDKCGQCW 113

BLAST of Carg09968 vs. NCBI nr
Match: XP_022988483.1 (uncharacterized protein LOC111485711 isoform X1 [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 6.7e-42
Identity = 100/118 (84.75%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKXXXXXXXXXXXXXXXXXXXEQDKCRQCW 119
           LIEADEDDKL GSAREAKRRLDERLRTQ K            XXXXX  EQDKC QCW
Sbjct: 61  LIEADEDDKLVGSAREAKRRLDERLRTQMK-----SRKFNWTXXXXXGVEQDKCGQCW 113

BLAST of Carg09968 vs. NCBI nr
Match: XP_022988484.1 (uncharacterized protein LOC111485711 isoform X2 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
          MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LIEADEDDKLDGSAREAKRRLDERLRTQRK 91
          LIEADEDDKL GSAREAKRRLDERLRTQ K
Sbjct: 61 LIEADEDDKLVGSAREAKRRLDERLRTQMK 90

BLAST of Carg09968 vs. TAIR10
Match: AT2G15580.1 (RING/U-box superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 5.0e-15
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETHLASNP 60
          MAGMLPGVECARRRR H      +S + A+ A       TRR    LYT+NHE+H A   
Sbjct: 1  MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61 SLERSLLIEA---DEDDKLDGSAREAKRRLDERLR 87
            ERS+  ++   D D+KLDG+A+EAK+RL++RLR
Sbjct: 61 FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

BLAST of Carg09968 vs. TrEMBL
Match: tr|A0A1S3B9W3|A0A1S3B9W3_CUCME (uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487385 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33
Identity = 80/123 (65.04%), Postives = 88/123 (71.54%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRSVLCLYTSNHE  L SNPS++R L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMQRRL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERL-RTQRK----XXXXXXXXXXXXXXXXXXXEQDKCR 119
           L+EA  +D+LDG AREAKRRLDERL RTQRK                       E+DKC 
Sbjct: 61  LMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of Carg09968 vs. TrEMBL
Match: tr|A0A1S3B9Y1|A0A1S3B9Y1_CUCME (uncharacterized protein LOC103487385 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487385 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.2e-32
Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRSVLCLYTSNHE  L SNPS+ R L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMRR-L 60

Query: 61  LIEADEDDKLDGSAREAKRRLDERL-RTQRK----XXXXXXXXXXXXXXXXXXXEQDKCR 119
           L+EA  +D+LDG AREAKRRLDERL RTQRK                       E+DKC 
Sbjct: 61  LMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of Carg09968 vs. TrEMBL
Match: tr|A0A0A0LWJ8|A0A0A0LWJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265120 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 79/122 (64.75%), Postives = 87/122 (71.31%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60
           MAG LPGVECARRRRCHQN +WSDSP IAAQ LTRRSVLCLYTSN+E  L SNPS+ER L
Sbjct: 1   MAGTLPGVECARRRRCHQNSIWSDSPLIAAQVLTRRSVLCLYTSNNEALLFSNPSMERRL 60

Query: 61  LIEADEDDKLDGSAREAKRRLDER-LRTQRK----XXXXXXXXXXXXXXXXXXXEQDKCR 118
           L+EA+ +D+LDG AREAKRRLDER LRTQRK                       E+DKC 
Sbjct: 61  LMEAEGEDELDGIAREAKRRLDERLLRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of Carg09968 vs. TrEMBL
Match: tr|A5ASH9|A5ASH9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLA-SNPSLERS 60
          MAGMLPGVECARRRR HQ+   SDSP +A    TRRS  CLYTSNHE H A S+ S++RS
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSPTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQRS 60

Query: 61 LLIEADEDDKLDGSAREAKRRLDERLRTQRK 91
          +L +A  D+KL G AREAK RLDERLRTQRK
Sbjct: 61 VLNQAYSDEKLGGVAREAKERLDERLRTQRK 91

BLAST of Carg09968 vs. TrEMBL
Match: tr|F6HCI8|F6HCI8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLA-SNPSLERS 60
          MAGMLPGVECARRRR HQ+   SDSP +A    TRRS  CLYTSNHE H A S+ S++RS
Sbjct: 1  MAGMLPGVECARRRRFHQSGGCSDSPTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQRS 60

Query: 61 LLIEADEDDKLDGSAREAKRRLDERLRTQRK 91
          +L +A  D+KL G AREAK RLDERLRTQRK
Sbjct: 61 VLNQAYSDEKLGGVAREAKERLDERLRTQRK 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022921934.16.5e-4598.31uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata][more]
XP_022921935.11.2e-4387.29uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata][more]
XP_023515554.12.1e-4380.51uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo][more]
XP_022988483.16.7e-4284.75uncharacterized protein LOC111485711 isoform X1 [Cucurbita maxima][more]
XP_022988484.11.8e-3996.67uncharacterized protein LOC111485711 isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G15580.15.0e-1550.53RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3B9W3|A0A1S3B9W3_CUCME1.7e-3365.04uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3B9Y1|A0A1S3B9Y1_CUCME4.2e-3265.04uncharacterized protein LOC103487385 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LWJ8|A0A0A0LWJ8_CUCSA3.5e-3164.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265120 PE=4 SV=1[more]
tr|A5ASH9|A5ASH9_VITVI1.3e-2268.13Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034074 PE=4 SV=1[more]
tr|F6HCI8|F6HCI8_VITVI1.3e-2268.13Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0118g00780 PE=4 SV=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09968-RACarg09968-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 2..103
NoneNo IPR availablePANTHERPTHR14155:SF215SUBFAMILY NOT NAMEDcoord: 2..103

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09968Carg17455Silver-seed gourdcarcarB148
Carg09968Carg27183Silver-seed gourdcarcarB153