Cp4.1LG18g05490 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG18g05490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger family protein
LocationCp4.1LG18 : 6002961 .. 6004234 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGGTATTTTTTGAATGGATGGTTTCTTTCCGGTGGGCCTAACCAACCCGACTCTGGTAATTTCATGGCACCTTCGCGCCTCCTTCCGCGCACTTTCCTCCTTGTTCCAGTGCCGATGGAGTCGATGCAATCAAACCGTACTTAATCACTTCTCTCCGCCTTCTCAGCCAGAAAAGCCCTAGATCTGTGTAGAAATTTCAACCTTCAAGGTTTCCAAAGTTTCTCCAATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACGTCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCGAATCCATCTCTGGTTCGTAAATCGCATCTCGTTCTGTCGATGAAATCAGAGTGTATTGATTCAATTGATTCGATTTTAAATGTTAATTTTGCAGGAAAGAAGCCTGTTAGTCGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGATGAGCGATTGAGAACGCAGAGGAAATCCAGGTACTGAAAACGATAGCAACACAGATCGATTAACACTTCGTTTGATTTAATCTCAATCATAAAGATCGATGACTGGTTTTTCCATGGTTCGAAAGAATGAAATATTCATGATCTGATGCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAGCGTGGAGCAAGACAAGTGCGGCCAGTGCTGGTGAAGAAGACGACTTCATTTCAGTGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCAGAAACACCGCTTTAAATTCATACAAACTCAAACTGTTCATGTTTGGATTCATTCATTATTTATGAATCTACCAATTATATATTTCTAACATCAATAATCGCTTTCGATCGATTAACTATATTACAAATTGAAATTTGTGCTAGTTTTTACCAGATTCAAAGACAAGAGTACTAACCCCTACAATTGTAATTCTCTTTCAACATTTTTTCGATCTGTTCAACGCTTCTACCGAAAAATTAAGAGAGGTTCTACCATAAGTATTAACGAATCATATCGTAATGTATACCTATATATTACATAGTTGTCTTTCATACCGTTCTTCATTCCTATAAACATCGAAGATCGAAGATCAATATGGCCACTCGAAA

mRNA sequence

ATTTGGTATTTTTTGAATGGATGGTTTCTTTCCGGTGGGCCTAACCAACCCGACTCTGGTAATTTCATGGCACCTTCGCGCCTCCTTCCGCGCACTTTCCTCCTTGTTCCAGTGCCGATGGAGTCGATGCAATCAAACCGTACTTAATCACTTCTCTCCGCCTTCTCAGCCAGAAAAGCCCTAGATCTGTGTAGAAATTTCAACCTTCAAGGTTTCCAAAGTTTCTCCAATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACGTCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCGAATCCATCTCTGGAAAGAAGCCTGTTAGTCGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGATGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAGCGTGGAGCAAGACAAGTGCGGCCAGTGCTGGTGAAGAAGACGACTTCATTTCAGTGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCAGAAACACCGCTTTAAATTCATACAAACTCAAACTGTTCATGTTTGGATTCATTCATTATTTATGAATCTACCAATTATATATTTCTAACATCAATAATCGCTTTCGATCGATTAACTATATTACAAATTGAAATTTGTGCTAGTTTTTACCAGATTCAAAGACAAGAGTACTAACCCCTACAATTGTAATTCTCTTTCAACATTTTTTCGATCTGTTCAACGCTTCTACCGAAAAATTAAGAGAGGTTCTACCATAAGTATTAACGAATCATATCGTAATGTATACCTATATATTACATAGTTGTCTTTCATACCGTTCTTCATTCCTATAAACATCGAAGATCGAAGATCAATATGGCCACTCGAAA

Coding sequence (CDS)

ATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACGTCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCGAATCCATCTCTGGAAAGAAGCCTGTTAGTCGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGATGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAGCGTGGAGCAAGACAAGTGCGGCCAGTGCTGGTGA

Protein sequence

MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLNWTSVEQDKCGQCW
BLAST of Cp4.1LG18g05490 vs. TrEMBL
Match: A0A0A0LWJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G265120 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-41
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAG LPGVECARRRRCHQN +WSDSP +AAQ LTRRSVLCLYTSN+E LL SNPS+ER L
Sbjct: 1   MAGTLPGVECARRRRCHQNSIWSDSPLIAAQVLTRRSVLCLYTSNNEALLFSNPSMERRL 60

Query: 61  LVEADEDDKLDGSAREAKRRLDER-LRTQRKS---------RKFNWTKLNWTSVEQDKCG 113
           L+EA+ +D+LDG AREAKRRLDER LRTQRKS         RKF+W KLNW  VE+DKCG
Sbjct: 61  LMEAEGEDELDGIAREAKRRLDERLLRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of Cp4.1LG18g05490 vs. TrEMBL
Match: A0A0D2PA85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-24
Identity = 71/148 (47.97%), Postives = 86/148 (58.11%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  VA   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LVEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 113
           L ++ +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQSFQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

BLAST of Cp4.1LG18g05490 vs. TrEMBL
Match: A0A0B0NAG0_GOSAR (Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-23
Identity = 70/148 (47.30%), Postives = 84/148 (56.76%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  VA   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LVEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 113
           L +  +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQTYQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

BLAST of Cp4.1LG18g05490 vs. TrEMBL
Match: A5ASH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-23
Identity = 71/149 (47.65%), Postives = 85/149 (57.05%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLA-SNPSLERS 60
           MAGMLPGVECARRRR HQ+   SDSP VA    TRRS  CLYTSNHE   A S+ S++RS
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSPTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQRS 60

Query: 61  LLVEADEDDKLDGSAREAKRRLDERLRTQRK----------------------------- 113
           +L +A  D+KL G AREAK RLDERLRTQRK                             
Sbjct: 61  VLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTEV 120

BLAST of Cp4.1LG18g05490 vs. TrEMBL
Match: F6HCI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-23
Identity = 71/149 (47.65%), Postives = 85/149 (57.05%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLA-SNPSLERS 60
           MAGMLPGVECARRRR HQ+   SDSP VA    TRRS  CLYTSNHE   A S+ S++RS
Sbjct: 1   MAGMLPGVECARRRRFHQSGGCSDSPTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQRS 60

Query: 61  LLVEADEDDKLDGSAREAKRRLDERLRTQRK----------------------------- 113
           +L +A  D+KL G AREAK RLDERLRTQRK                             
Sbjct: 61  VLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTEV 120

BLAST of Cp4.1LG18g05490 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 5.3e-14
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQAL------TRRSVLCLYTSNHETLLASNP 60
           MAGMLPGVECARRRR H      +S + A+ A       TRR    LYT+NHE+  A   
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SLERSLLVEA---DEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLNWTSVEQDK 109
             ERS+  ++   D D+KLDG+A+EAK+RL++RLR   ++R+    K N   +EQ K
Sbjct: 61  FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTRQNGKDKGN--KLEQGK 115

BLAST of Cp4.1LG18g05490 vs. NCBI nr
Match: gi|659086379|ref|XP_008443904.1| (PREDICTED: uncharacterized protein LOC103487385 isoform X1 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-43
Identity = 93/123 (75.61%), Postives = 101/123 (82.11%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP V AQ LTRRSVLCLYTSNHE LL SNPS++R L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMQRRL 60

Query: 61  LVEADEDDKLDGSAREAKRRLDERL-RTQRKS---------RKFNWTKLNWTSVEQDKCG 114
           L+EA  +D+LDG AREAKRRLDERL RTQRKS         RKF+W KLNW  VE+DKCG
Sbjct: 61  LMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of Cp4.1LG18g05490 vs. NCBI nr
Match: gi|659086381|ref|XP_008443905.1| (PREDICTED: uncharacterized protein LOC103487385 isoform X2 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 4.3e-42
Identity = 93/123 (75.61%), Postives = 100/123 (81.30%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP V AQ LTRRSVLCLYTSNHE LL SNPS+ R L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMRR-L 60

Query: 61  LVEADEDDKLDGSAREAKRRLDERL-RTQRKS---------RKFNWTKLNWTSVEQDKCG 114
           L+EA  +D+LDG AREAKRRLDERL RTQRKS         RKF+W KLNW  VE+DKCG
Sbjct: 61  LMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of Cp4.1LG18g05490 vs. NCBI nr
Match: gi|449457937|ref|XP_004146704.1| (PREDICTED: uncharacterized protein LOC101215379 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-41
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAG LPGVECARRRRCHQN +WSDSP +AAQ LTRRSVLCLYTSN+E LL SNPS+ER L
Sbjct: 1   MAGTLPGVECARRRRCHQNSIWSDSPLIAAQVLTRRSVLCLYTSNNEALLFSNPSMERRL 60

Query: 61  LVEADEDDKLDGSAREAKRRLDER-LRTQRKS---------RKFNWTKLNWTSVEQDKCG 113
           L+EA+ +D+LDG AREAKRRLDER LRTQRKS         RKF+W KLNW  VE+DKCG
Sbjct: 61  LMEAEGEDELDGIAREAKRRLDERLLRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKCG 120

BLAST of Cp4.1LG18g05490 vs. NCBI nr
Match: gi|823149208|ref|XP_012474474.1| (PREDICTED: RING finger protein 165-like [Gossypium raimondii])

HSP 1 Score: 119.8 bits (299), Expect = 3.1e-24
Identity = 71/148 (47.97%), Postives = 86/148 (58.11%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  VA   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LVEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 113
           L ++ +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQSFQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

BLAST of Cp4.1LG18g05490 vs. NCBI nr
Match: gi|728828628|gb|KHG08071.1| (Zinc/RING finger 3 [Gossypium arboreum])

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-23
Identity = 70/148 (47.30%), Postives = 84/148 (56.76%), Query Frame = 1

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60
           MAGMLPGVECARRRR HQ+   SDS  VA   LTRRS  CLYTSN+ET  +S  S +RS+
Sbjct: 1   MAGMLPGVECARRRRFHQSGGSSDSSSVAVIGLTRRSSFCLYTSNNETHHSSVSSQQRSI 60

Query: 61  LVEADEDDKLDGSAREAKRRLDERLRTQRK------------------------------ 113
           L +  +DDKL G AREAK RLDERLR+QRK                              
Sbjct: 61  LTQTYQDDKLGGVAREAKERLDERLRSQRKSEPKRHSNKEGMKCVDGKSLVQGELRTEVF 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWJ8_CUCSA3.3e-4173.77Uncharacterized protein OS=Cucumis sativus GN=Csa_1G265120 PE=4 SV=1[more]
A0A0D2PA85_GOSRA2.2e-2447.97Uncharacterized protein OS=Gossypium raimondii GN=B456_004G114100 PE=4 SV=1[more]
A0A0B0NAG0_GOSAR3.1e-2347.30Zinc/RING finger 3 OS=Gossypium arboreum GN=F383_35205 PE=4 SV=1[more]
A5ASH9_VITVI5.3e-2347.65Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034074 PE=4 SV=1[more]
F6HCI8_VITVI5.3e-2347.65Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00780 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G15580.15.3e-1445.30 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659086379|ref|XP_008443904.1|1.3e-4375.61PREDICTED: uncharacterized protein LOC103487385 isoform X1 [Cucumis melo][more]
gi|659086381|ref|XP_008443905.1|4.3e-4275.61PREDICTED: uncharacterized protein LOC103487385 isoform X2 [Cucumis melo][more]
gi|449457937|ref|XP_004146704.1|4.8e-4173.77PREDICTED: uncharacterized protein LOC101215379 [Cucumis sativus][more]
gi|823149208|ref|XP_012474474.1|3.1e-2447.97PREDICTED: RING finger protein 165-like [Gossypium raimondii][more]
gi|728828628|gb|KHG08071.1|4.5e-2347.30Zinc/RING finger 3 [Gossypium arboreum][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0061630 ubiquitin protein ligase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g05490.1Cp4.1LG18g05490.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g05490Cp4.1LG04g08890Cucurbita pepo (Zucchini)cpecpeB360