Cp4.1LG09g06540 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g06540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding protein, putative
Location	Cp4.1LG09 : 4942778 .. 4947289 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTAAGTTTTTTGAATTCTTCTTTTGATTTTGCTAATCAATATGCTCATGGAAGGATCATGGTTTTCTTGATTGTTCTTTGGTGTTCATCATGATTGAAACTTGTCAGAACTCTTCTTACATTTACATTTTTTTGAGTTCCACAACTCGGGGATGAGAATTTGAATATCTTGTTGAGGATTGTTGGGAGGGAGTCGTACATTGGCTAATTTAGGGAATGATACTGAGTTTATAATTAAGGAATACATCTCTATTAGTATGAGGCCGTTTTGGGAAGCCAAAAGCAAACTAACGAGAGCTTATACTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGGGATTCCTAACATGGTATCAAAGTCATGCCCTTAACTTAGCCATGTGAATAGAATTCTCAAATGTCGAATAAAGAAGTTGTGAGCCTCGAAGGTGTAGTTAAAAGTGACTCAAGTGTTGAACAAAGGGTGTGTCCTACATTGGCTAATTTAGGGGTTTATAAGTAAGGAATACATCCCCATTGGTATGAGGCCTTACGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGACAATATCATACCATTGTGGAGGTCTGTGATTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGCCATATCAATAGAAAGCCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGGTGTGTCCCACATTGGCTAATTTAGGGGTATATAAGTAACGAATACATCTCCATTAGTATGAGACCTTTTGGGGAAACCAAACAGTACACAATCATACCATTGTGGAGAGTCGTGGTTCCTAACACTAGTTAACGTCGAATCACTTTTGTGTTGAAAAACATATAAACTATAATTTTCCTTTGGAGCTTTGGATGGGAAGATTTGGCTGTCTGCATTTTATCAGGGTGAATTTTGTTTCATGTGGCTGTTCATATTTTTGTGGAAGTACAATGCCGCCTGCATTTGCCCCGAATTTCAATCGTTTCGGGAACCGATTGTTTATACATGTTCTAGAAAAGGTAATAAGCACGATGACAGTAAAGGAATGGTTTGAAACTAGTCCAAGTGAGCATAACTCAATGGTAACTAGCTATACCCTCGACCGAGAAAGGACATCGGAAGAATTGAAACTCAGATTTGTGAAAATTCGGGGGCTCGATATCTTATGGAGTTCGTGGATGCACGGACATTAGGATTTACATGTGATGTTCACTGCTTATATTAAAATGATACATTTTGTTGCGTCAAGATATATCTATTTGTATCGTAATTAGAGTAAAGTTTATCATGTTCATGTTTCGATATTGATTTTTTTGTTTTAGGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTCAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGTTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTGAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAATGCCTCGCACCTGAGGACGTTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACGCAGGTTCTTCTCCATTCAATGGTGCTGGTAATGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCTGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGTGTTTCTAATACACAGTCGAATAGAGGTGAATCTCTCTCTATCTCTTTCGTTCTTTTATCGTCGTTACATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACTCTTTATAAGAGTGTGGAAACCTCTCCCCAGTAGACGTGTTTTCAAAACCTTGAGGGTAAGTTCGAAGGGGAAATCCTAAGGAGGACAATATCTGCTAGCGGTGGGGTTGGGTTGTTACAACTGATATCAGAGCTAGACACTAGGCGATGTGCCAATGGGGAGGTTGTTCCTTGAAGGGGGTAGACACAAGGCGATGTGCCAGTAAAGACGCTAGGCCCTGAAGGGGGGTGGATTTGGTAGGAGTCCCACATCGATTGGAGAAAGGAATGAGTGCCAGCGATAACGTTGGGCCCTGAAGGGGGTGGATTGTTTGAGATCCCACATCAGTTGGAGAGGAGAACAAAACACCCTTTATAAGAGTGTGGAAACCTCTCGCTAGTAGATGCGTTTTAAAATCCTTGAGGGTAAGCCCGAAAGGGAAAACCCAAAGAGGACAATATCTACTAGCGGTGGGAACGGGCTATTACAAATGGTATCAAAGCCAAACATCGGGCAATGTGCCAGCTAAGAGGCTGTTCTCCGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGTTGGACCCCGAAGGGGGTGGATTTGGTAGGGGTCCCACATCGATTGAAGAAAGGAATGAGTGTCAGCGAGGACGCTGGACCCTGAAGGGGGTGGATTATGAGATCCCACATCAGTTGGGGGGGAGGAGAACGAAACACTCTCTACAGGGTGTGGAAACCTCTCCCTAGTAGTAGACGTGTTTTAAAATCTTTGAGGGTAAACTCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGCATTACATCTCTACAAACATTAGATCTTCGAGCTTATTGATATCAGTTTAAGCATGATTAAAACGCAACGACGTTACTTGAACAAGATCTGTTTATGAATGGTGAAATGTTTGTTTGATTCAGGAATTGCTGCTNCGAGGGCTTGGGAGTTAGCAAACTCTCTATAACAGTATTGACACTCGTATTTCCTCTCACCGGATGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCACCTCCGCCTCCTCCTCCTCCTCCCCCTCCTCCCATATGATAATATGATACTGTGAGAGCTAATTTGTTTTCTGTTTTGAGAAAGTGTCCCATAAAAGAAAGCAGGTTCCAGAGGGTTTGGTTTTTGGATTGAGCTTGAAAATATAGGTATTTTCTTCCTTTCTTTACTTGTAATTTGATTTGATTGATATGTATAATTGGATTGTGGGTAAGGTCTGATCATACGTTACTCCGACAAAGAAACGGTGTCACACGAACGAATCGACATCATATTTTTTCTTCTTTTCTTTGGTTTCGGGTTCGTTTTAGAACAACTCATTCAGGCTTTCTTCTTGTTGTTTCATCTCTTGTTATTATTATTAGCGGTTCTGGGTTTTTACTTCTCATGTGATTGATTGTATGAAACTGAGGTTGATTTATTTAGACATAGATCATACTCTCCATCTACCTTCCTTCCAATTCTTTCTTACTTTACAGCAAAAACGGATCTACAAATTATCTGCGATTACTTTATGCATGTGCTATGGTTTTTATTTACAATGCTACCATCAACTGGGTGCAATGGTGCGTTGTCTTTACCTAAAACAAAAGAGTAGCATATGCTTTGAATATTTTAACGGTTACAGGGTGCATTGCCTTTATCTAA

mRNA sequence

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTCAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGTTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTGAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAATGCCTCGCACCTGAGGACGTTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACGCAGGTTCTTCTCCATTCAATGGTGCTGGTAATGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCTGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGGTGCATTGCCTTTATCTAA

Coding sequence (CDS)

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTCAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGTTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTGAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAATGCCTCGCACCTGAGGACGTTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACGCAGGTTCTTCTCCATTCAATGGTGCTGGTAATGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCTGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGGTGCATTGCCTTTATCTAA

Protein sequence

SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYGCIAFI

Homology

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BLAST of Cp4.1LG09g06540 vs. Swiss-Prot
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.0e-61
Identity = 172/442 (38.91%), Postives = 235/442 (53.17%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLF+GGISW+TDED+L+++F  YGEV + ++MRD+ TGR RGFGFV+FSDP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 124
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +F++YF+ +G +TD  +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 185 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRF-SPVTVG 244
           RA+PK+ +P       G    S G  GS   GY QGY        G     RF    +VG
Sbjct: 184 RALPKDANP-------GGGGRSMGGGGS--GGY-QGYGGNESSYDGRMDSNRFLQHQSVG 243

Query: 245 RGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVY 304
            G  S  S GYG G          YG G NG+    YG      Y G+   YG+ +   Y
Sbjct: 244 NGLPSYGSSGYGAG----------YGNGSNGAGYGAYG-----GYTGSAGGYGAGATAGY 303

Query: 305 GGGS---GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG 364
           G  +    G GS    + +N W    +S   N  +     GSG  H+G          +G
Sbjct: 304 GATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGY-----GSGAAHSG----------YG 363

Query: 365 VGHGENAGSSPFNGAGNVEFGNG---GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 424
           V        SP +G  N  +G G   GS  GYG        + + Y          G+N 
Sbjct: 364 VPGAAPPTQSP-SGYSNQGYGYGGYSGSDSGYG--------NQAAYGVVGGRPSGGGSNN 396

Query: 425 EGN-----SFYGHSSWQSLPTE 431
            G+       YG  SW+S P++
Sbjct: 424 PGSGGYMGGGYGDGSWRSDPSQ 396

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BLAST of Cp4.1LG09g06540 vs. Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.7e-45
Identity = 123/323 (38.08%), Postives = 173/323 (53.56%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  D L+ YF  +GE+ E M+MRD  T R+RGFGFV F+DP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 65  VLEKH-VIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + + H  +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSANTVVEDV 138

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKE-LSPVPNRNQLGAYPYS-------FGRVG--SYLSGYNQGYNTTSVGGYGLRSDGRF 244
           PKE + P   R +    PY+        G +G  ++++ Y +GY       YG +  G F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 245 SPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGS 304
                G    + ++   G G N            P   ++L YG     S  GN     S
Sbjct: 259 PAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADL-YGPASQDSGVGNYISAAS 318

Query: 305 PSPMVYGGGSGGNGSILSSSVQN 317
           P P   G G G  G +++++  N
Sbjct: 319 PQP-GSGFGHGIAGPLIATAFTN 325

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BLAST of Cp4.1LG09g06540 vs. Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-44
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  + L+ YF  YG++ E M+M+D  T R+RGFGFV FSDP    +V
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +DG+ V+ K A PR       R +  ++     TRTKKIFVGGL++  T  D 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPR-------RAHPKMV-----TRTKKIFVGGLSAPTTLEDV 146

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K YF+QFG I DA++M+D  T R RGFGF+T++SE+ V+KV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKEL 188
           PKE+
Sbjct: 207 PKEV 198

[Close]

BLAST of Cp4.1LG09g06540 vs. Swiss-Prot
Match: RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.6e-44
Identity = 101/228 (44.30%), Postives = 143/228 (62.72%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D  KLF+GGI+ +T E+ LKQYF  YG V+E ++ +++ TG+ RGFGFV F++     + 
Sbjct: 4   DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDD-----------QNILSRNNTGI--LGSPG-PTRTKKIF 124
           + + H I G+ V+ +KA+ + +           +  + + N G+  + S G  +RTKKIF
Sbjct: 64  LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123

Query: 125 VGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFH 184
           VGGL+S  TE +FK YF++FG  TD VVM+D  T RPRGFGF+TY+SE+SVE V+   FH
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183

Query: 185 ELNGKMVEVKRAVPKELSPVPNRNQLGAYP-YSFGRVGSYLSGYNQGY 218
           EL+ K VEVKRA+PKE     N N +   P YS  +   Y+   N GY
Sbjct: 184 ELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQN-GY 230

[Close]

BLAST of Cp4.1LG09g06540 vs. Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-43
Identity = 103/236 (43.64%), Postives = 144/236 (61.02%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DP K+FIGG+SW T ++ L++YF  +GEV E ++MRD  T R+RGFGFV F D     +V
Sbjct: 18  DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + + +H +D +T++ K A PR  Q  +             TRTKKIFVGGL+   T  D 
Sbjct: 78  LAQSRHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSVNTTVEDV 137

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+ESE+ VEKV    FHE+N KMVE K+A 
Sbjct: 138 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 197

Query: 185 PKE-LSPVPN---RNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSP 236
           PKE +SP  +   R+++  Y      +G  + GY  G+  T+   Y  RS    +P
Sbjct: 198 PKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGY-PGFQATT---YASRSYTGLAP 237

[Close]

BLAST of Cp4.1LG09g06540 vs. TrEMBL
Match: A0A0A0LTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181500 PE=4 SV=1)

HSP 1 Score: 791.6 bits (2043), Expect = 5.3e-226
Identity = 411/469 (87.63%), Postives = 431/469 (91.90%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YP++FGRVGSYL+GYNQGYN T+VGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+GLNL+ GLN NYGTGPN SSNL YGRVMS SY GNLNRYGSP+PMVY GG 
Sbjct: 241 SPISPGYGMGLNLETGLNPNYGTGPNVSSNLSYGRVMSPSYSGNLNRYGSPNPMVYSGG- 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV  SAGTN+SHLRTFPGSGGVHTGTSSLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360

Query: 364 GENAGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GENAGSS FN   N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GENAGSS-FNTV-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 463
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA GYTVGYG
Sbjct: 421 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA-GYTVGYG 465

[Close]

BLAST of Cp4.1LG09g06540 vs. TrEMBL
Match: A0A061GGB0_THECC (RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 3.5e-153
Identity = 295/467 (63.17%), Postives = 359/467 (76.87%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ +G+VVE +IMRDR TGRARGFGFVVF+DP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K+YFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SP P+RNQLG Y +   RV S+L+GY QGYNT+SVGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
            P+SPGYG+GLN ++ L+ +YG   N  SNL YGR + +S+ GN NR+G  SP  YGGGS
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFG--SPFGYGGGS 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW----GVGH 363
           GGN SIL+S+ +N+WGN   +  TN++      GSG  ++G SS   IG LW     +G 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 364 GENAGSSPFNGA----GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPN-IYDEVHGNNEE 423
           G  A S+ +NG     G+ +FG G   +GYGR+  SNV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASA-YNGGNLRYGSGDFGVGSGGIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 424 GNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGY 462
             SFYG S+W+S P++LE SSS GFGLG+A+SDV++ NN++ Y  GY
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMT-NNSADYIGGY 463

[Close]

BLAST of Cp4.1LG09g06540 vs. TrEMBL
Match: A0A061GIB9_THECC (RNA-binding family protein isoform 5 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 3.5e-153
Identity = 295/467 (63.17%), Postives = 359/467 (76.87%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ +G+VVE +IMRDR TGRARGFGFVVF+DP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K+YFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SP P+RNQLG Y +   RV S+L+GY QGYNT+SVGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
            P+SPGYG+GLN ++ L+ +YG   N  SNL YGR + +S+ GN NR+G  SP  YGGGS
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFG--SPFGYGGGS 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW----GVGH 363
           GGN SIL+S+ +N+WGN   +  TN++      GSG  ++G SS   IG LW     +G 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 364 GENAGSSPFNGA----GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPN-IYDEVHGNNEE 423
           G  A S+ +NG     G+ +FG G   +GYGR+  SNV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASA-YNGGNLRYGSGDFGVGSGGIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 424 GNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGY 462
             SFYG S+W+S P++LE SSS GFGLG+A+SDV++ NN++ Y  GY
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMT-NNSADYIGGY 463

[Close]

BLAST of Cp4.1LG09g06540 vs. TrEMBL
Match: A0A061GHM1_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 3.5e-153
Identity = 295/467 (63.17%), Postives = 359/467 (76.87%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ +G+VVE +IMRDR TGRARGFGFVVF+DP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K+YFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SP P+RNQLG Y +   RV S+L+GY QGYNT+SVGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
            P+SPGYG+GLN ++ L+ +YG   N  SNL YGR + +S+ GN NR+G  SP  YGGGS
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFG--SPFGYGGGS 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW----GVGH 363
           GGN SIL+S+ +N+WGN   +  TN++      GSG  ++G SS   IG LW     +G 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 364 GENAGSSPFNGA----GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPN-IYDEVHGNNEE 423
           G  A S+ +NG     G+ +FG G   +GYGR+  SNV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASA-YNGGNLRYGSGDFGVGSGGIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 424 GNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGY 462
             SFYG S+W+S P++LE SSS GFGLG+A+SDV++ NN++ Y  GY
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMT-NNSADYIGGY 463

[Close]

BLAST of Cp4.1LG09g06540 vs. TrEMBL
Match: W9QWV7_9ROSA (RNA-binding protein Musashi-2-like protein OS=Morus notabilis GN=L484_004264 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 1.2e-150
Identity = 295/472 (62.50%), Postives = 351/472 (74.36%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+PGKLFIGGISWDT EDRL++YFQ++G+VVE +IM+DR TGRARGFGF+VF+DP VA +
Sbjct: 1   MEPGKLFIGGISWDTTEDRLREYFQSFGDVVEAVIMKDRATGRARGFGFIVFADPTVAEK 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV EKHVID R VEAKKAVPRDDQNIL+RNN+ I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 61  VVTEKHVIDSRFVEAKKAVPRDDQNILNRNNSSIQGSPGPARTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITD VVMYDHNTQRPRGFGFITY+SE++V+KVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSP P+R QLG Y +  GRV S+L+GY+QGYN  SVGGY     GR SPVTVGR G 
Sbjct: 181 PKELSPGPSRGQLGVYNHGLGRVSSFLNGYSQGYNLNSVGGY-----GRLSPVTVGRNGF 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SP  PGYG+G+N + GL+ +YG   N SSNL +GR +S SY  + NR+GS     YGGG+
Sbjct: 241 SPFGPGYGVGVNFETGLSPSYGVNANLSSNLNFGRGLSPSYSSSSNRFGSTPG--YGGGN 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW-------- 363
            GN SILS++ +N WGN   S  TN+++   F GS G +TG  SL  IG LW        
Sbjct: 301 EGNSSILSTTGRNFWGNGNLSYPTNSANSSAFIGSAGGNTGVGSLGSIGALWGSSPNPSQ 360

Query: 364 --GVGHGENAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
             G G   N GS  + G+G+V F +GG  +GYGR+   +V+  S Y A   YD  H +  
Sbjct: 361 GGGAGSNYNTGSLVY-GSGDVRFRSGG--LGYGRN-GGSVAPGSSYGANGGYDGAHSDIY 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYGCIA 466
           +G + YG S+W+S  +EL+ S S GFGLGN ASDV+S+N  SGY  GYG  A
Sbjct: 421 DGGALYGDSTWKSSQSELDGSGSFGFGLGNGASDVMSKN--SGYIGGYGVTA 459

[Close]

BLAST of Cp4.1LG09g06540 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 431.8 bits (1109), Expect = 5.4e-121
Identity = 264/486 (54.32%), Postives = 324/486 (66.67%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDT+E+RLK+YF ++GEV+E +I++DR TGRARGFGFVVF+DP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTG-ILGSPG-PTRTKKIFVGGLASTVTESD 124
           + EKH IDGR VEAKKAVPRDDQN+++R+N+  I GSPG P RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 125 FKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 184
           FK YF+QFGT TD VVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 185 VPKELSPVPNRNQLGA-YPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRG 244
           VPKELSP P+R+ LGA Y Y   RV + L+GY QG+N  +VGGYGLR DGRFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 245 GLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGG 304
           G +  S GYG+ +N D GL   +  G N + N+ YGR MS  Y GN NR+G P+    GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 305 GSGGNGSILSSSVQNLWGNVG----NSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGV 364
             GGN S  SS  +NLWGN G    N+  TN S+  T+   GG  +G ++L+G  G  GV
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTN-SNSNTY--MGGSSSGNNTLSGPFGNSGV 363

Query: 365 GHGENAGSSPFNGAGNVEFGNGGS--------VVGY-----GRSIRSNVSSASLYSAPNI 424
             G   G +      NV+FG GG+          GY     G +  +  SS S  SA N 
Sbjct: 364 NWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNN 423

Query: 425 --YD-----EVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNA--ASDVISRNNAS 462
             YD     E +GN     + Y   +W+S   E E  +   +G+G    +SDV +R+++ 
Sbjct: 424 TGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSP 481

[Close]

BLAST of Cp4.1LG09g06540 vs. TAIR10
Match: AT5G47620.4 (AT5G47620.4 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 362.8 bits (930), Expect = 3.1e-100
Identity = 225/478 (47.07%), Postives = 290/478 (60.67%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNILSRNNTGILGSP 123
           VVL KH+IDG+                       VEAKKAVPRDD  + +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 124 GPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESV 183
           GP+ +KKIFVGGLAS+VTE++FKKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 184 EKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTS 243
           +KVL KTFHELNGKMVEVK AVPK+++    RNQ+    +   R+ S L+ Y QG++ + 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 244 VGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMS 303
           + GYG++ + R+SP    RGG SP   GYGI LN +     NYG+G +G     +GR  S
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFS 302

Query: 304 SSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSG 363
             Y  +L R+G  S M  GG S GNGS+L+++ +N LWGN G    +N+   R +F G+ 
Sbjct: 303 PGYAASLGRFG--SQMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNS 362

Query: 364 GVHTGTSSLNGIGGLWGVGHGENAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLY 423
           G+    SSL  IG  WG      +      G   +E   G  V GY        S +S+ 
Sbjct: 363 GM----SSLGSIGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL 422

Query: 424 SAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGY 458
                         E +S Y  S W SLP + E+      GLG    D +SR  A GY
Sbjct: 423 --------------EADSLYSDSMWLSLPAKAEE------GLGMGPLDFMSRGPA-GY 442

[Close]

BLAST of Cp4.1LG09g06540 vs. TAIR10
Match: AT4G26650.1 (AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 340.9 bits (873), Expect = 1.3e-93
Identity = 229/482 (47.51%), Postives = 286/482 (59.34%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDTDE+RL++YF  YG++VE +IMRDR TGRARGFGF+VF+DP VA RV
Sbjct: 13  DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGIL-------GSPGPTRTKKIFVGGLAST 124
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + +        G+ G  RTKKIFVGGL S+
Sbjct: 73  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132

Query: 125 VTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMV 184
           +TE++FK YFDQFGTI D VVMYDHNTQRPRGFGFIT++SEESV+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192

Query: 185 EVKRAVPKEL-SPVPNRNQLGAYPYSFGRV------GSYLSGYNQGYNTTSVGGYGLRSD 244
           EVKRAVPKEL S  PNR+ L  Y  ++G V       SY + +  GYN  ++G     S 
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLG-----SA 252

Query: 245 GRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSY--GGNL 304
           GRFSP+  GR   S     +G+GLN +  LN N+       + L Y R+  + Y    + 
Sbjct: 253 GRFSPIGSGRNAFS----SFGLGLNQELNLNSNF-----DGNTLGYSRIPGNQYFNSASP 312

Query: 305 NRYGSPSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSL 364
           NRY SP       G     S  + S ++LWGN  +S+G                      
Sbjct: 313 NRYNSPI------GYNRGDSAYNPSNRDLWGNRSDSSGP--------------------- 372

Query: 365 NGIGGLWGVGHGENAGSSPFNGAGNVEFGNGGSVVGYGRS--IRSNVSSASLYSAPNIYD 424
              G   GV  G N G+    G  +V   N     GYGRS    S +S  S     N +D
Sbjct: 373 ---GWNLGVSVGNNRGNW---GLSSVVSDNN----GYGRSYGAGSGLSGLSFAGNTNGFD 432

Query: 425 EVHGNNEEGNSFYGHSSW-QSLP-----TELED-SSSIGFGLGNAASDVISRNNASGYTV 462
              G    G+S Y  S+W QS+P      EL+  S S GFG+ N  SD  S N + GY+ 
Sbjct: 433 GSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDP-SANASEGYSG 442

[Close]

BLAST of Cp4.1LG09g06540 vs. TAIR10
Match: AT5G55550.3 (AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 312.0 bits (798), Expect = 6.2e-85
Identity = 211/419 (50.36%), Postives = 271/419 (64.68%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDTDE+RL+ YF  YG+VVE +IMRDR TGRARGFGF+VF+DP V+ RV
Sbjct: 4   DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGI-LGSP---GPTRTKKIFVGGLASTVTE 124
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + I L SP   G  RTKKIFVGGL S++TE
Sbjct: 64  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +FK YFDQFGTI D VVMYDHNTQRPRGFGFIT++S+++V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183

Query: 185 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDG----RFSPV 244
           RAVPKE+SPV N     A   ++G  GS     N  +N  + G     S G    RFSPV
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGG-GSNRMPANSYFNNFAPGPGFYNSLGPVGRRFSPV 243

Query: 245 T-VGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSY--GGNLNRYGS 304
              GR  +S     +G+GLN D  LNLN  +    SS   Y R+ S+ Y  G + NRY S
Sbjct: 244 IGSGRNAVS----AFGLGLNHDLSLNLN-PSCDGTSSTFGYNRIPSNPYFNGASPNRYTS 303

Query: 305 PSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAG----TNASHLRTFPGSGGVHTGTSSLN 364
           P       G     S  +S+ ++LWGN  ++AG     N S+     G+ G+ + ++  N
Sbjct: 304 PI------GHNRTESPYNSNNRDLWGNRTDTAGPGWNLNVSNGNN-RGNWGLPSSSAVSN 363

Query: 365 GIGGLWGVGHGENAG--SSPFNG-AGNV-EFGNGGSVVGYGRSIRSNVSSASLYSAPNI 405
              G +G  +G ++G  SSPFNG  G++ E   GGSV       +  + S S +   N+
Sbjct: 364 DNNG-FGRNYGTSSGLSSSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNL 408

[Close]

BLAST of Cp4.1LG09g06540 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-62
Identity = 172/442 (38.91%), Postives = 235/442 (53.17%), Query Frame = 1


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLF+GGISW+TDED+L+++F  YGEV + ++MRD+ TGR RGFGFV+FSDP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 124
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +F++YF+ +G +TD  +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 185 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRF-SPVTVG 244
           RA+PK+ +P       G    S G  GS   GY QGY        G     RF    +VG
Sbjct: 184 RALPKDANP-------GGGGRSMGGGGS--GGY-QGYGGNESSYDGRMDSNRFLQHQSVG 243

Query: 245 RGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVY 304
            G  S  S GYG G          YG G NG+    YG      Y G+   YG+ +   Y
Sbjct: 244 NGLPSYGSSGYGAG----------YGNGSNGAGYGAYG-----GYTGSAGGYGAGATAGY 303

Query: 305 GGGS---GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG 364
           G  +    G GS    + +N W    +S   N  +     GSG  H+G          +G
Sbjct: 304 GATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGY-----GSGAAHSG----------YG 363

Query: 365 VGHGENAGSSPFNGAGNVEFGNG---GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 424
           V        SP +G  N  +G G   GS  GYG        + + Y          G+N 
Sbjct: 364 VPGAAPPTQSP-SGYSNQGYGYGGYSGSDSGYG--------NQAAYGVVGGRPSGGGSNN 396

Query: 425 EGN-----SFYGHSSWQSLPTE 431
            G+       YG  SW+S P++
Sbjct: 424 PGSGGYMGGGYGDGSWRSDPSQ 396

[Close]

BLAST of Cp4.1LG09g06540 vs. NCBI nr
Match: gi|659127261|ref|XP_008463611.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo])

HSP 1 Score: 802.0 bits (2070), Expect = 5.6e-229
Identity = 414/469 (88.27%), Postives = 433/469 (92.32%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YPY+FGRVGSYL+GYNQGYN TSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+G+NLD GLN NYGTGP  SSNL YGRVMS SYGGNLNRYGSP+PMVYGGG 
Sbjct: 241 SPISPGYGMGINLDTGLNPNYGTGP--SSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV NSAGTN+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 364 GENAGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN G SPFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GEN-GGSPFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 463
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA GYTVGYG
Sbjct: 421 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA-GYTVGYG 464

[Close]

BLAST of Cp4.1LG09g06540 vs. NCBI nr
Match: gi|449443534|ref|XP_004139532.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus])

HSP 1 Score: 791.6 bits (2043), Expect = 7.6e-226
Identity = 411/469 (87.63%), Postives = 431/469 (91.90%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YP++FGRVGSYL+GYNQGYN T+VGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+GLNL+ GLN NYGTGPN SSNL YGRVMS SY GNLNRYGSP+PMVY GG 
Sbjct: 241 SPISPGYGMGLNLETGLNPNYGTGPNVSSNLSYGRVMSPSYSGNLNRYGSPNPMVYSGG- 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV  SAGTN+SHLRTFPGSGGVHTGTSSLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360

Query: 364 GENAGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GENAGSS FN   N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GENAGSS-FNTV-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 463
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA GYTVGYG
Sbjct: 421 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA-GYTVGYG 465

[Close]

BLAST of Cp4.1LG09g06540 vs. NCBI nr
Match: gi|590626877|ref|XP_007026293.1| (RNA-binding family protein isoform 3 [Theobroma cacao])

HSP 1 Score: 549.7 bits (1415), Expect = 5.0e-153
Identity = 295/467 (63.17%), Postives = 359/467 (76.87%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ +G+VVE +IMRDR TGRARGFGFVVF+DP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K+YFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SP P+RNQLG Y +   RV S+L+GY QGYNT+SVGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
            P+SPGYG+GLN ++ L+ +YG   N  SNL YGR + +S+ GN NR+G  SP  YGGGS
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFG--SPFGYGGGS 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW----GVGH 363
           GGN SIL+S+ +N+WGN   +  TN++      GSG  ++G SS   IG LW     +G 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 364 GENAGSSPFNGA----GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPN-IYDEVHGNNEE 423
           G  A S+ +NG     G+ +FG G   +GYGR+  SNV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASA-YNGGNLRYGSGDFGVGSGGIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 424 GNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGY 462
             SFYG S+W+S P++LE SSS GFGLG+A+SDV++ NN++ Y  GY
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMT-NNSADYIGGY 463

[Close]

BLAST of Cp4.1LG09g06540 vs. NCBI nr
Match: gi|590626883|ref|XP_007026295.1| (RNA-binding family protein isoform 5 [Theobroma cacao])

HSP 1 Score: 549.7 bits (1415), Expect = 5.0e-153
Identity = 295/467 (63.17%), Postives = 359/467 (76.87%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ +G+VVE +IMRDR TGRARGFGFVVF+DP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K+YFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SP P+RNQLG Y +   RV S+L+GY QGYNT+SVGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
            P+SPGYG+GLN ++ L+ +YG   N  SNL YGR + +S+ GN NR+G  SP  YGGGS
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFG--SPFGYGGGS 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW----GVGH 363
           GGN SIL+S+ +N+WGN   +  TN++      GSG  ++G SS   IG LW     +G 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 364 GENAGSSPFNGA----GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPN-IYDEVHGNNEE 423
           G  A S+ +NG     G+ +FG G   +GYGR+  SNV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASA-YNGGNLRYGSGDFGVGSGGIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 424 GNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGY 462
             SFYG S+W+S P++LE SSS GFGLG+A+SDV++ NN++ Y  GY
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMT-NNSADYIGGY 463

[Close]

BLAST of Cp4.1LG09g06540 vs. NCBI nr
Match: gi|590626871|ref|XP_007026291.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 549.7 bits (1415), Expect = 5.0e-153
Identity = 295/467 (63.17%), Postives = 359/467 (76.87%), Query Frame = 1


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ +G+VVE +IMRDR TGRARGFGFVVF+DP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K+YFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SP P+RNQLG Y +   RV S+L+GY QGYNT+SVGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
            P+SPGYG+GLN ++ L+ +YG   N  SNL YGR + +S+ GN NR+G  SP  YGGGS
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFG--SPFGYGGGS 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW----GVGH 363
           GGN SIL+S+ +N+WGN   +  TN++      GSG  ++G SS   IG LW     +G 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 364 GENAGSSPFNGA----GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPN-IYDEVHGNNEE 423
           G  A S+ +NG     G+ +FG G   +GYGR+  SNV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASA-YNGGNLRYGSGDFGVGSGGIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 424 GNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGY 462
             SFYG S+W+S P++LE SSS GFGLG+A+SDV++ NN++ Y  GY
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMT-NNSADYIGGY 463

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNP1_ARATH	2.0e-61	38.91	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 S...	[more]
MSI2H_HUMAN	2.7e-45	38.08	RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1	[more]
MSIR6_DROME	1.7e-44	50.00	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2...	[more]
RBP1_ARATH	6.6e-44	44.30	RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1	[more]
MSI1H_HUMAN	1.5e-43	43.64	RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1	[more]

BLAST of Cp4.1LG09g06540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTE8_CUCSA	5.3e-226	87.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181500 PE=4 SV=1	[more]
A0A061GGB0_THECC	3.5e-153	63.17	RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1	[more]
A0A061GIB9_THECC	3.5e-153	63.17	RNA-binding family protein isoform 5 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1	[more]
A0A061GHM1_THECC	3.5e-153	63.17	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1	[more]
W9QWV7_9ROSA	1.2e-150	62.50	RNA-binding protein Musashi-2-like protein OS=Morus notabilis GN=L484_004264 PE=...	[more]

BLAST of Cp4.1LG09g06540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07810.2	5.4e-121	54.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.4	3.1e-100	47.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	1.3e-93	47.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.3	6.2e-85	50.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	1.1e-62	38.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG09g06540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127261\|ref\|XP_008463611.1\|	5.6e-229	88.27	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo]	[more]
gi\|449443534\|ref\|XP_004139532.1\|	7.6e-226	87.63	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus]	[more]
gi\|590626877\|ref\|XP_007026293.1\|	5.0e-153	63.17	RNA-binding family protein isoform 3 [Theobroma cacao]	[more]
gi\|590626883\|ref\|XP_007026295.1\|	5.0e-153	63.17	RNA-binding family protein isoform 5 [Theobroma cacao]	[more]
gi\|590626871\|ref\|XP_007026291.1\|	5.0e-153	63.17	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g06540.1	Cp4.1LG09g06540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..74 score: 9.4E-16coord: 109..167 score: 1.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 108..180 score: 4.1E-24coord: 8..79 score: 2.8
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 107..184 score: 17.677coord: 7..83 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 7..88 score: 3.0E-24coord: 102..186 score: 7.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 103..205 score: 4.03E-26coord: 5..102 score: 3.09
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 106..336 score: 1.2E-163coord: 5..89 score: 1.2E
None	No IPR available	PANTHER	PTHR24012:SF433	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 106..336 score: 1.2E-163coord: 5..89 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g06540	Cucsa.180480	Cucumber (Gy14) v1	cgycpeB0495
Cp4.1LG09g06540	CmaCh13G003830	Cucurbita maxima (Rimu)	cmacpeB215
Cp4.1LG09g06540	CmaCh18G006000	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g06540	CmoCh18G005940	Cucurbita moschata (Rifu)	cmocpeB375
Cp4.1LG09g06540	CmoCh13G004080	Cucurbita moschata (Rifu)	cmocpeB185
Cp4.1LG09g06540	Cla009042	Watermelon (97103) v1	cpewmB041
Cp4.1LG09g06540	Csa1G181500	Cucumber (Chinese Long) v2	cpecuB020
Cp4.1LG09g06540	MELO3C025543	Melon (DHL92) v3.5.1	cpemeB028
Cp4.1LG09g06540	ClCG01G010610	Watermelon (Charleston Gray)	cpewcgB030
Cp4.1LG09g06540	CSPI01G15780	Wild cucumber (PI 183967)	cpecpiB017
Cp4.1LG09g06540	Lsi02G011240	Bottle gourd (USVL1VR-Ls)	cpelsiB027
Cp4.1LG09g06540	MELO3C025543.2	Melon (DHL92) v3.6.1	cpemedB035
Cp4.1LG09g06540	CsaV3_UNG051400	Cucumber (Chinese Long) v3	cpecucB0056
Cp4.1LG09g06540	CsaV3_1G017060	Cucumber (Chinese Long) v3	cpecucB0021
Cp4.1LG09g06540	Bhi08G000631	Wax gourd	cpewgoB0042
Cp4.1LG09g06540	CsGy1G015480	Cucumber (Gy14) v2	cgybcpeB007
Cp4.1LG09g06540	Carg25112	Silver-seed gourd	carcpeB1443
Cp4.1LG09g06540	Carg25613	Silver-seed gourd	carcpeB0065

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g06540	Cp4.1LG20g06600	Cucurbita pepo (Zucchini)	cpecpeB046

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g06540	Cucurbita pepo (Zucchini)	cpecpeB048
Cp4.1LG09g06540	Cucurbita maxima (Rimu)	cmacpeB212
Cp4.1LG09g06540	Cucurbita moschata (Rifu)	cmocpeB182
Cp4.1LG09g06540	Melon (DHL92) v3.6.1	cpemedB033