CsaV3_1G017060 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G017060
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	chr1 : 11578255 .. 11583308 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATTAGCATACCAAATTATTACCCTTGTTCATCATCGTCTCCCTTTGTAATTTTCGTACGCGCAAGACAACCAAGTCTTTCTTTTCTCTTTTCTTTCTCTCTCTACCTATACATATATAATTATAATTGTGTGTATATGTAATTTGTTATATATTTAGATGCAAATATTGCGCCCATTCCAGATGCAAATTCCTTTTCTTACACAAATATCTTTCTCCTTCTCTCTGTTTCATATATAGCCTTCAATCGTTTATTTGGTATTGCATATTTATCTAGAACAAAAACCAAAACAGTAACTGGAACAAGGAAAGAGATAGGAAAAAAGGAGGGCCTCTCGCCCTCTCTTCTTATTATGCCTTCTCTTAGATCTTAGATTCTAGAGTTCCCAACTGGGTCGTTTTCATTTCGGTAAGTTTCTCTTCTTTTCTCTGCAAATCATTTTCTTTCTTCAATCTTCCTACTTCATTTCTTTTCTGGGTTTTGAATCAAAACTCATTTCTTCCGAATTTTAACCTTTCTTCTTTGATGGGTTCATTCCTTTTATGTGCTTTTAGCTTTTGAGGATTCCTTGTTTGTAGATCGATCGATTTTTCTGATCGGTGGACGCTCCGATGCTTTGAGATCGAATCTGATTTCAATCATTCTCTATCTAACAATAAGAGCATTTTCCATTTTGATGACGATTTTGTGTTTTTCTTTTTCATAACATCTGTTTAATTTAGCTCGCATTGCCGTGTTTCTTAAATGAATGTTTCTTTTTCAATCCTAGCTTCAATTCTATTCCTCTTCTAATGTAAGCAAAACTGTTCCATAGATATCTGTGTTGTTTTTGTATAGCCTTCTGTTTTTCCTCAGCTTGGATTGATCGGCTTTCTGGCTTCTTCTTCTCAAGCCGATTGGATTAGACTTTAAGATATGCGATTGCTGTGTGCCGTATGCACTCTTATTGCTGAATGATACTGATGGGATTGGTTGCAATGGATTTGTAGAGTGGGCATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACAGATGAAGATCGTCTTCGGGAGTACTTTCGGAACTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGGCCACTGGCCGTGCCCGTGGCTTCGGATTCGTTGTCTTTGCTGACCCTGTTGCTGCAGCGAGAGTTGTATTGGAAAAACATGTAATTGATGGAAGAACTGTAAGTCTTGTGTATTCTACTTTATTTTCATTGGTTTTTCCACCTGTATTAGAAGCTTTAGATGTCTTTCAAAGAATGTTCCAGTGTGTCTTCAGATTCAATTTTGTGGATTAAATATACTCGTGGAGGGATCAAGGTTTTCCTGATATCTTTTGGTGTTCCTCATGATCCAAACTTATTAGAATTCTTCAGCATTTATATGCTAAATCTCTTTATCTCGATAATTCATAGTTTTCCTTCACAGCATGAAGGGGAAGATTCGGCTATTCACATTTTAATTGGGCAATTTCTGTTTCATGTGAAATGATGACCATGTTTTTGTGGAAGTATGATGCCAATGTATGTACTTGGGTTGCCTTCATATGTCCTGGGTATATGTACAAACATTTATATATCAAATCAATACTGTGAGAGGGCTTTGGTCCTTCGATAAATTTGCAAATTTTTGTGTAGAAAGAAGTCTATCTTAATCTTCCTTAGTAGTCCTCAATGTAAAATGACCTTACTTGAACAGGATTTGTTCTATAGGTTGTACATCTATATCCTTGAGTTCTTAAGTAGTCCTCAATGTGAAACAATGAGTTGTGTATATTAGGAGGCTCGTTATCTTGTTGAGTTTGTCATGGACATTAGGCTTTATGTGTGATGGCTTCCACGTGTGTTAAAAAGATACGTTTTGTTGCTTCCAGACCTTTATGTGTATTGGTAAAGAAAGTAAATTCTATCATTTCCATGTTTTGATGTTAGTTTTTTTTGTCTTCTTTTTTCTTTTGTTCAGGTTGAAGCAAAGAAGGCGGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAATAATACTGGTATTCTTGGATCACCTGGTCCTACTCGCACAAAGAAGATATTTGTTGGAGGATTGGCATCCACTGTTACAGAGAGTGACTTCAAAAAGTATTTTGATCAGTTTGGTACAATCGTAGATGTCGTTGTGATGTATGATCATAATACTCAAAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAGAGGGCTGTTCCCAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGCTGGATATCCTTTCAATTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCGCAGTTGGGGGATATGGATTGAGATCTGATGGTAGATTTAGTCCTGTTACAGTTGGTCGGGGTGGCCTTTCTCCAATTAGTCCTGGTTATGGAATGGGGCTAAATCTTGAAACAGGCTTGAACCCCAACTATGGGACAGGTCCCAATGTTAGCTCTAACCTCAGCTATGGACGAGTAATGAGCCCCTCGTACAGTGGAAATTTAAATAGGTACGGTAGCCCAAACCCCATGGTATATAGTGGTGGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCAGTACCTCTGCTGGTACAAACTCCTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAGTTCATTAAACAATATCGGAGGGCTTTGGGGTGCTTCTGCAAGTTTAGGTCATGGGGAAAATGCTGGTTCTTCATTCAATACTGTTAATCTTGACTTCGGAAACGGAGATGCCAGCTTTACATCAGGAACAACTGTAGGTTATGCTAGAAGCATTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATTTATGATGAGGTTCATGGGAATAATGATGAAGGAAACACATTTTATGGGCATTCCAGTTGGCAGTCGTTGCCAACAGAGCTTGAGGATTCTTCCTCAATTGGTTTTGGCCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTGGTTATACTGTTGGATACGGTGTTTCTAATAGACAATCTAATAGAGGTGAGTTTTTTTTACTTCAAAGAAAACTTTGAATATTTTAAAGTTTTTCTTTCTTTTGCTGCTGTTATTTCTGTAGAAACTTTAGACTTTCAAGATTTTATCACTTTAAACATTATAAAATCAAAAATCAAAACTAAATTATTACGACCTTACTTGAACAAGATTTGATCTGTAGGTTTTACCATAATGTCTTTTTGTTCTAAAGATTGTATATAACACATGGCTTTTTCATATTTATGCTTTTATAGGAGTTTTTCCTGGAATTTCTTACAATCTTCTTATAGAAGTCGGAATATATTTCTTATCCAAAAAAAAAAAAGAGAAGTCGGAATATATTAACCTTCGAACCAATGTAATGTACTGTGCACCTTCCAAAGTTGGGAGACCCTATTAACTAACTATTTAGTGAAAAAACTTTTACCTTTTTCTTGGGGATTTTTAATGTTCTTTCCTCCAAAATATTAGACCTGTAAACAATGCCTTCTAACCACATGATACTTTTTTATTTTTCTAGCTATCTGATCATAGTTTTATAAAAGCTGTCTAAAAAAACAAAAACAGAGAATCCACACAGAATCAGTCCCTATTCCCTAAGCTTTTCAATGCAAAGTTTGCAAAGTTGACAAGTTTCGTTCTCTGTTGCACAAAAATAAGTTTGCATAGTCACCTACAGAAATAAGAGAAAAAGGAGGCACATTTATTGCCTGCTAATTTGCGAATTAGATCTGTTTCTGTTTGGTTGTGTTATAATTAAAATATATGATCTTCGGCAGAACATGTATAAGTTATTTGCTGAATATCTGTCGTAGTTTGGGAAGTGTCCAAATCTCACTTAGACAAACGTAGGTTTAACAATATAAAACTAGGCTGATCTTTTTGTTTTGTATGTAAATGTTTTGAATCAGGAATTGCTGCTTAGGAAGAAGATGATACAACAGATGTCAAAAATTATAGTAGGTGATGCGTATTTCAGTAAAGCAGGTGTACTGCAATTTTTCGTATAATTTCGTCCTTGTGATACACTCCCATTTGATACTGTCAGAGCTAATTTGTTTTCTGTTTCACAAACTGTTCCATAAAGAAGCAGGTTCCAGAGGGTTTTCTCTTGGTCAGGATTGAGCTTGAAAATATAGGTCTTTCTTCTTTCTTCTTCTTCTACTTCTACTTCTTTCTTTCCTTCCTTCTTTCTTGTAATTTGATTGATATGTATAATTGGATTGTGGGTAAGGTATATGTGCAGAACTGTTGCATAATACGCTACTCCGAGAAATGATGTCACACGAACGAATCAACATCTTTTTTCTTTTTTTCTCCTTTTCTTTTCGGGTTCGTCTTTCTGAAAAAAGATGCTAGTATTCATCAGGTTTTCTTGTTGTTTGACCTTTTATTAGTCATTCTGGGTTTTTACTTCTCATCTGATTGTATGAAACTGAGGTTGATTAGTGGTGTGATGTTGTCCAGCTTCCCAATTCTTCTTTGTTGTAAATTTAGCTCCCTTTTGAGCTAAACCAAAGTTTTTTAAGCTAAAAAATACTCTTACTTGCAATTGAAAATGTTCTTACTTGCAATTGGAAATGTTTCTTTTTTGCATCCATCCAATTGGGTTGTTTATCTTATAAAGTTGTAGGTTTGAATTATTTCCTTATTTATTGTATTAAAGTTGTAGGTTCCAATTATTTCCTTATTTATTATTGTATTATGTTCTTACTCTATTTCTTTAATGTTTTGTAATATACATCTTTAAGAGTATAAGTGTGTTTAGATTTGATTTTCTTATTGTTTAAATAACTGTTGGAAGGGGAAAAAAAGTGTTTATATACACATACACATACACATGAAATTCAATCCAAGTGGGC

mRNA sequence

ATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACAGATGAAGATCGTCTTCGGGAGTACTTTCGGAACTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGGCCACTGGCCGTGCCCGTGGCTTCGGATTCGTTGTCTTTGCTGACCCTGTTGCTGCAGCGAGAGTTGTATTGGAAAAACATGTAATTGATGGAAGAACTGTTGAAGCAAAGAAGGCGGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAATAATACTGGTATTCTTGGATCACCTGGTCCTACTCGCACAAAGAAGATATTTGTTGGAGGATTGGCATCCACTGTTACAGAGAGTGACTTCAAAAAGTATTTTGATCAGTTTGGTACAATCGTAGATGTCGTTGTGATGTATGATCATAATACTCAAAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAGAGGGCTGTTCCCAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGCTGGATATCCTTTCAATTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCGCAGTTGGGGGATATGGATTGAGATCTGATGGTAGATTTAGTCCTGTTACAGTTGGTCGGGGTGGCCTTTCTCCAATTAGTCCTGGTTATGGAATGGGGCTAAATCTTGAAACAGGCTTGAACCCCAACTATGGGACAGGTCCCAATGTTAGCTCTAACCTCAGCTATGGACGAGTAATGAGCCCCTCGTACAGTGGAAATTTAAATAGGTACGGTAGCCCAAACCCCATGGTATATAGTGGTGGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCAGTACCTCTGCTGGTACAAACTCCTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAGTTCATTAAACAATATCGGAGGGCTTTGGGGTGCTTCTGCAAGTTTAGGTCATGGGGAAAATGCTGGTTCTTCATTCAATACTGTTAATCTTGACTTCGGAAACGGAGATGCCAGCTTTACATCAGGAACAACTGTAGGTTATGCTAGAAGCATTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATTTATGATGAGGTTCATGGGAATAATGATGAAGGAAACACATTTTATGGGCATTCCAGTTGGCAGTCGTTGCCAACAGAGCTTGAGGATTCTTCCTCAATTGGTTTTGGCCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTGGTTATACTGTTGGATACGGTGTTTCTAATAGACAATCTAATAGAGGAATTGCTGCTTAG

Coding sequence (CDS)

ATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACAGATGAAGATCGTCTTCGGGAGTACTTTCGGAACTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGGCCACTGGCCGTGCCCGTGGCTTCGGATTCGTTGTCTTTGCTGACCCTGTTGCTGCAGCGAGAGTTGTATTGGAAAAACATGTAATTGATGGAAGAACTGTTGAAGCAAAGAAGGCGGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAATAATACTGGTATTCTTGGATCACCTGGTCCTACTCGCACAAAGAAGATATTTGTTGGAGGATTGGCATCCACTGTTACAGAGAGTGACTTCAAAAAGTATTTTGATCAGTTTGGTACAATCGTAGATGTCGTTGTGATGTATGATCATAATACTCAAAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAGAGGGCTGTTCCCAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGCTGGATATCCTTTCAATTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCGCAGTTGGGGGATATGGATTGAGATCTGATGGTAGATTTAGTCCTGTTACAGTTGGTCGGGGTGGCCTTTCTCCAATTAGTCCTGGTTATGGAATGGGGCTAAATCTTGAAACAGGCTTGAACCCCAACTATGGGACAGGTCCCAATGTTAGCTCTAACCTCAGCTATGGACGAGTAATGAGCCCCTCGTACAGTGGAAATTTAAATAGGTACGGTAGCCCAAACCCCATGGTATATAGTGGTGGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCAGTACCTCTGCTGGTACAAACTCCTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAGTTCATTAAACAATATCGGAGGGCTTTGGGGTGCTTCTGCAAGTTTAGGTCATGGGGAAAATGCTGGTTCTTCATTCAATACTGTTAATCTTGACTTCGGAAACGGAGATGCCAGCTTTACATCAGGAACAACTGTAGGTTATGCTAGAAGCATTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATTTATGATGAGGTTCATGGGAATAATGATGAAGGAAACACATTTTATGGGCATTCCAGTTGGCAGTCGTTGCCAACAGAGCTTGAGGATTCTTCCTCAATTGGTTTTGGCCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTGGTTATACTGTTGGATACGGTGTTTCTAATAGACAATCTAATAGAGGAATTGCTGCTTAG

Protein sequence

MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGLSPISPGYGMGLNLETGLNPNYGTGPNVSSNLSYGRVMSPSYSGNLNRYGSPNPMVYSGGGGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGHGENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA

Homology

[Close]

BLAST of CsaV3_1G017060 vs. NCBI nr
Match: XP_004139532.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN65038.1 hypothetical protein Csa_1G181500 [Cucumis sativus])

HSP 1 Score: 872.5 bits (2253), Expect = 6.7e-250
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGGG 300
           SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGGG
Sbjct: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGGG 300

Query: 301 GNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGHG 360
           GNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGHG
Sbjct: 301 GNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGHG 360

Query: 361 ENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGN 420
           ENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGN
Sbjct: 361 ENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGN 420

Query: 421 TFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           TFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA
Sbjct: 421 TFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 477

[Close]

BLAST of CsaV3_1G017060 vs. NCBI nr
Match: XP_022142553.1 (heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia] >XP_022142555.1 heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia])

HSP 1 Score: 828.6 bits (2139), Expect = 1.1e-236
Identity = 451/478 (94.35%), Postives = 464/478 (97.07%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVIAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTI DVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSPVPNRNQL GYP+ FGRVGSYLNGYNQGYNP +VGGYGLRSDGRFSP++VGRGGL
Sbjct: 181 PKESSPVPNRNQLGGYPYGFGRVGSYLNGYNQGYNPASVGGYGLRSDGRFSPISVGRGGL 240

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGG- 300
           SPISPGYG+GLNL+TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RYGSPNPM+Y GG 
Sbjct: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRYGSPNPMLYGGGS 300

Query: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360
           GGNGSILSSSVQNLWGNV  SAG NSSHLRTFPGSGGVHTGT+SLN+IGGLWGASASLGH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGANSSHLRTFPGSGGVHTGTNSLNSIGGLWGASASLGH 360

Query: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GENAGS FNT NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENAGSPFNTANLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           N+FYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRN+AGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNSAGYTVGYGVSNRQSNRGIAA 478

[Close]

BLAST of CsaV3_1G017060 vs. NCBI nr
Match: XP_008463611.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 825.9 bits (2132), Expect = 7.2e-236
Identity = 452/478 (94.56%), Postives = 457/478 (95.61%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDR TGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSPVPNRNQLAGYP+NFGRVGSYLNGYNQGYNPT+VGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYS-GG 300
           SPISPGYGMG+NL+  XXXXXXXXXXXXXXXXXXXXXXXXXX    RYGSPNPMVY    
Sbjct: 241 SPISPGYGMGINLD--XXXXXXXXXXXXXXXXXXXXXXXXXXGNLNRYGSPNPMVYGXXX 300

Query: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360
                ILSSSVQNLWGNVS SAGTNSSHLRTFPGSGGVHTGT+SLNNIGGLWG SASLGH
Sbjct: 301 XXXXXILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEN GS FNT NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENGGSPFNTANLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 476

[Close]

BLAST of CsaV3_1G017060 vs. NCBI nr
Match: XP_023520385.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 805.4 bits (2079), Expect = 1.0e-229
Identity = 441/478 (92.26%), Postives = 455/478 (95.19%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K YFDQFGTI DVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSPVPNR+QL  YP+ FGRVGSYLNGYNQGYNPT+VG YGLRSD RFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGG- 300
           SPISPGYG+GLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVY GG 
Sbjct: 241 SPISPGYGIGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300

Query: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360
           GGNGSILSSSVQNLWGNV  S GTNSSHLRTFPGSGGVHTGT+SLN IGGLWGASASL H
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GE++GS FN VNLDF +GD S TSGTTVGYARS+GTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           N+FYGHSSWQ LPTELEDSSS+GFGLGNAASDVISRNN GYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]

BLAST of CsaV3_1G017060 vs. NCBI nr
Match: XP_023520384.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 805.4 bits (2079), Expect = 1.0e-229
Identity = 441/478 (92.26%), Postives = 455/478 (95.19%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K YFDQFGTI DVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSPVPNR+QL  YP+ FGRVGSYLNGYNQGYNPT+VG YGLRSD RFSPVTVGRGGL
Sbjct: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGG- 300
           SPISPGYG+GLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVY GG 
Sbjct: 273 SPISPGYGIGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 332

Query: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360
           GGNGSILSSSVQNLWGNV  S GTNSSHLRTFPGSGGVHTGT+SLN IGGLWGASASL H
Sbjct: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392

Query: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GE++GS FN VNLDF +GD S TSGTTVGYARS+GTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452

Query: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           N+FYGHSSWQ LPTELEDSSS+GFGLGNAASDVISRNN GYTVGYGVSNRQSNRGIAA
Sbjct: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]

BLAST of CsaV3_1G017060 vs. TAIR10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 372.1 bits (954), Expect = 5.2e-103
Identity = 265/498 (53.21%), Postives = 310/498 (62.25%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLFIGGISWDT+E+RL+EYF +FGEV+E +I++DR TGRARGFGFVVFADP  A  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 121
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 122 FKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 181
           FK YF+QFGT  DVVVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 182 VPKESSPVPNRNQL-AGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRG 241
           VPKE SP P+R+ L AGY +   RV + LNGY QG+NP AVGGYGLR DGRFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 242 GLSPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMV-YS 301
           G +  S GYGM +N +           XXXXXXXXXXXXXXXXXXXXXR+G   P V Y 
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTXXXXXXXXXXXXXXXXXXXXXRFG---PAVGYE 303

Query: 302 GGGGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTG-------TSSLNNIGGL 361
           G                                                 +    N G  
Sbjct: 304 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGPFGNSGVN 363

Query: 362 WGASASLGHGENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTN----VSSASLYSAP 421
           WGA    G G NA S+ N      GNG++ F  GT    AR+ G N     SS S  SA 
Sbjct: 364 WGAP---GGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASAT 423

Query: 422 NI--YD-----EVHGNNDEGNTFYGHSSWQSLPTELEDSSSIGFGLGNA--ASDVISRNN 475
           N   YD     E +GN       Y   +W+S   E E  +   +G+G    +SDV +R++
Sbjct: 424 NNTGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSS 483

[Close]

BLAST of CsaV3_1G017060 vs. TAIR10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 352.4 bits (903), Expect = 4.3e-97
Identity = 228/506 (45.06%), Postives = 288/506 (56.92%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+  KLFIGGISW+T EDRLR+YF +FGEV+E +IM+DRATGRARGFGFVVFADP  A R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 61  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNILSRNNTGILGSP 120
           VVL KH+IDG+                       VEAKKAVPRDD  + +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 121 GPTRTKKIFVGGLASTVTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESV 180
           GP+ +KKIFVGGLAS+VTE++FKKYF QFG I DVVVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 181 EKVLYKTFHELNGKMVEVKRAVPKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTA 240
           +KVL KTFHELNGKMVEVK AVPK+ +    RNQ+    F   R+ S LN Y QG++P+ 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 241 VGGYGLRSDGRFSPVTVGRGGLSPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXX 300
           + GYG++ + R+SP    RGG SP   GYG+ LN E                        
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFE----PNQTQNYGSGSSGGFGRPFS 302

Query: 301 XXXXXXXXRYGSPNPMVYSGGG--GNGSILSSSVQN-LWGNVSTSAGTNSSHLR-TFPGS 360
                   R+GS    + SGG   GNGS+L+++ +N LWGN      +NS   R +F G+
Sbjct: 303 PGYAASLGRFGS---QMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGN 362

Query: 361 GGVHTGTSSLNNIGGLWGASA---SLGHGENAGSSFNTVNLDFGNGDASFTSGTTVGYAR 420
            G+    SSL +IG  WG  A   S  HGE  G     +    G     ++SG+++    
Sbjct: 363 SGM----SSLGSIGDNWGTVARARSSYHGERGGVGLEAMR---GVHVGGYSSGSSI---- 422

Query: 421 SIGTNVSSASLYSAPNIYDEVHGNNDEGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASD 478
                                     E ++ Y  S W SLP + E+      GLG    D
Sbjct: 423 -------------------------LEADSLYSDSMWLSLPAKAEE------GLGMGPLD 453

[Close]

BLAST of CsaV3_1G017060 vs. TAIR10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-91
Identity = 227/492 (46.14%), Postives = 278/492 (56.50%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLFIGGISWDTDE+RL+EYF  +G++VE +IMRDR TGRARGFGF+VFADP  A RV
Sbjct: 13  DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGIL-------GSPGPTRTKKIFVGGLAST 121
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + +        G+ G  RTKKIFVGGL S+
Sbjct: 73  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132

Query: 122 VTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMV 181
           +TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT++SEESV+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192

Query: 182 EVKRAVPKE-SSPVPNRNQLAGYPFNFGRV-GSYLNGYNQGYNPTAVGGYGLRSDGRFSP 241
           EVKRAVPKE SS  PNR+ L GY  N+G V                       S GRFSP
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVXXXXXXXXXXXXXXXXXXXXXXXSAGRFSP 252

Query: 242 VTVGRGGLSPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPN 301
           +  GR   S     +G+GLN E                                RY SP 
Sbjct: 253 IGSGRNAFS----SFGLGLNQE---LNLNSNFDGNTLGYSRIPGNQYFNSASPNRYNSP- 312

Query: 302 PMVYSGGGGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWG 361
                G     S  + S ++LWGN S S+G             G + G S  NN G  WG
Sbjct: 313 ----IGYNRGDSAYNPSNRDLWGNRSDSSGP------------GWNLGVSVGNNRGN-WG 372

Query: 362 ASASLGHGENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEV 421
            S+ +      G S+   +   G    SF +G T G+  SIG       LY         
Sbjct: 373 LSSVVSDNNGYGRSYGAGS---GLSGLSF-AGNTNGFDGSIG------ELY--------- 432

Query: 422 HGNNDEGNTFYGHSSW-QSLP-----TELED-SSSIGFGLGNAASDVISRNNAGYTVGYG 478
                 G++ Y  S+W QS+P      EL+  S S GFG+ N  SD  +  + GY+  Y 
Sbjct: 433 -----RGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNYN 455

[Close]

BLAST of CsaV3_1G017060 vs. TAIR10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 315.5 bits (807), Expect = 5.8e-86
Identity = 221/496 (44.56%), Postives = 284/496 (57.26%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLFIGGISWDTDE+RLR+YF N+G+VVE +IMRDRATGRARGFGF+VFADP  + RV
Sbjct: 4   DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGI-LGSP---GPTRTKKIFVGGLASTVTE 121
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + I L SP   G  RTKKIFVGGL S++TE
Sbjct: 64  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123

Query: 122 SDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT++S+++V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183

Query: 182 RAVPKESSPVPNRNQLAGYPFNFG------RVGSYLNGYNQG---YNPTAVGGYGLRSDG 241
           RAVPKE SPV N         N+G         SY N +  G   YN  ++G  G     
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN--SLGPVG----R 243

Query: 242 RFSPVT-VGRGGLSPISPGYGMGLNLE-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
           RFSPV   GR  +S     +G+GLN + +                               
Sbjct: 244 RFSPVIGSGRNAVS----AFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPN 303

Query: 302 RYGSPNPMVYSGGGGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNN 361
           RY SP      G     S  +S+ ++LWGN + +AG         PG             
Sbjct: 304 RYTSP-----IGHNRTESPYNSNNRDLWGNRTDTAG---------PG------------- 363

Query: 362 IGGLWGASASLGHGENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAP 421
               W  + S  +G N G        ++G   +S  S    G+ R+ GT   S+ L S+P
Sbjct: 364 ----WNLNVS--NGNNRG--------NWGLPSSSAVSNDNNGFGRNYGT---SSGLSSSP 423

Query: 422 -NIYDEVHGNNDEGNTFYGHSSW--QSLPT----ELED-SSSIGFGLGNAASDVISRNNA 475
            N ++   G    G + Y  S+W  Q LP+    EL++ S + G+ + N  SD  + +  
Sbjct: 424 FNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPE 445

[Close]

BLAST of CsaV3_1G017060 vs. TAIR10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-59
Identity = 102/189 (53.97%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLF+GGISW+TDED+LRE+F N+GEV + ++MRD+ TGR RGFGFV+F+DP    RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 121
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 122 SDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +F++YF+ +G + DV +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 182 RAVPKESSP 187
           RA+PK+++P
Sbjct: 184 RALPKDANP 192

[Close]

BLAST of CsaV3_1G017060 vs. Swiss-Prot
Match: sp|Q8W034|RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.9e-58
Identity = 102/189 (53.97%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLF+GGISW+TDED+LRE+F N+GEV + ++MRD+ TGR RGFGFV+F+DP    RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 121
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 122 SDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +F++YF+ +G + DV +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 182 RAVPKESSP 187
           RA+PK+++P
Sbjct: 184 RALPKDANP 192

[Close]

BLAST of CsaV3_1G017060 vs. Swiss-Prot
Match: sp|Q96DH6|MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-46
Identity = 102/224 (45.54%), Postives = 137/224 (61.16%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD  T R+RGFGFV FADP +  +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 122 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K+YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYG 224
           PKE   P   R +  G P+    + +++ G      P  V  YG
Sbjct: 199 PKEVMFPPGTRGRARGLPYT---MDAFMLGMGMLGYPNFVATYG 227

[Close]

BLAST of CsaV3_1G017060 vs. Swiss-Prot
Match: sp|Q920Q6|MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-46
Identity = 102/224 (45.54%), Postives = 137/224 (61.16%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD  T R+RGFGFV FADP +  +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 122 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K+YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYG 224
           PKE   P   R +  G P+    + +++ G      P  V  YG
Sbjct: 199 PKEVMFPPGTRGRARGLPYT---MDAFMLGMGMLGYPNFVATYG 227

[Close]

BLAST of CsaV3_1G017060 vs. Swiss-Prot
Match: sp|O43347|MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.2e-44
Identity = 103/236 (43.64%), Postives = 140/236 (59.32%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           DP K+FIGG+SW T ++ LREYF  FGEV E ++MRD  T R+RGFGFV F D     +V
Sbjct: 18  DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + + +H +D +T++ K A PR  Q  +             TRTKKIFVGGL+   T  D 
Sbjct: 78  LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 137

Query: 122 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K+YF+QFG + D ++M+D  T R RGFGF+T+ESE+ VEKV    FHE+N KMVE K+A 
Sbjct: 138 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 197

Query: 182 PKE----SSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSP 233
           PKE    +     R+++  Y  +   +G  + GY  G+  T    Y  RS    +P
Sbjct: 198 PKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGY-PGFQATT---YASRSYTGLAP 237

[Close]

BLAST of CsaV3_1G017060 vs. Swiss-Prot
Match: sp|Q61474|MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.9e-44
Identity = 103/236 (43.64%), Postives = 139/236 (58.90%), Query Frame = 0


Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           DP K+FIGG+SW T ++ LREYF  FGEV E ++MRD  T R+RGFGFV F D     +V
Sbjct: 18  DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + + +H +D +T++ K A PR  Q  +             TRTKKIFVGGL+   T  D 
Sbjct: 78  LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 137

Query: 122 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K YF+QFG + D ++M+D  T R RGFGF+T+ESE+ VEKV    FHE+N KMVE K+A 
Sbjct: 138 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 197

Query: 182 PKE----SSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSP 233
           PKE    +     R+++  Y  +   +G  + GY  G+  T    Y  RS    +P
Sbjct: 198 PKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGY-PGFQATT---YASRSYTGLAP 237

[Close]

BLAST of CsaV3_1G017060 vs. TrEMBL
Match: tr|A0A0A0LTE8|A0A0A0LTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1)

HSP 1 Score: 872.5 bits (2253), Expect = 4.5e-250
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGGG 300
           SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGGG
Sbjct: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGGG 300

Query: 301 GNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGHG 360
           GNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGHG
Sbjct: 301 GNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGHG 360

Query: 361 ENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGN 420
           ENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGN
Sbjct: 361 ENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGN 420

Query: 421 TFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           TFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA
Sbjct: 421 TFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 477

[Close]

BLAST of CsaV3_1G017060 vs. TrEMBL
Match: tr|A0A1S3CK54|A0A1S3CK54_CUCME (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501720 PE=4 SV=1)

HSP 1 Score: 825.9 bits (2132), Expect = 4.8e-236
Identity = 452/478 (94.56%), Postives = 457/478 (95.61%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDR TGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSPVPNRNQLAGYP+NFGRVGSYLNGYNQGYNPT+VGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYS-GG 300
           SPISPGYGMG+NL+  XXXXXXXXXXXXXXXXXXXXXXXXXX    RYGSPNPMVY    
Sbjct: 241 SPISPGYGMGINLD--XXXXXXXXXXXXXXXXXXXXXXXXXXGNLNRYGSPNPMVYGXXX 300

Query: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360
                ILSSSVQNLWGNVS SAGTNSSHLRTFPGSGGVHTGT+SLNNIGGLWG SASLGH
Sbjct: 301 XXXXXILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEN GS FNT NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENGGSPFNTANLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 476

[Close]

BLAST of CsaV3_1G017060 vs. TrEMBL
Match: tr|A0A061GHM1|A0A061GHM1_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 7.6e-149
Identity = 316/479 (65.97%), Postives = 366/479 (76.41%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+ GKLFIGGISWDT+EDRLREYF+ FG+VVE +IMRDRATGRARGFGFVVFADP  A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K+YFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240
           PKESSP P+RNQL GY F   RV S+LNGY QGYN ++VGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGG- 300
            P+SPGYGMGLN E+XXXXXXXXXXXXXXXXXXXXXXXXX      R+GS  P  Y GG 
Sbjct: 243 PPLSPGYGMGLNFESXXXXXXXXXXXXXXXXXXXXXXXXXFNGNSNRFGS--PFGYGGGS 302

Query: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360
           GGN SIL+S+ +N+WGN S +  TNS+      GSG  ++G SS  +IG LW +S SLG 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPN-IYDEVHGNNDE 420
           G  A S++N                       S   NV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASAYNXXXXXXXXXXXXXXXXXXXXXXNS---NVAQLSTHGASNGGYDGAYANIYE 422

Query: 421 GNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
             +FYG S+W+S P++LE SSS GFGLG+A+SDV++ N+A Y  GY V+NRQ+NRGIAA
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMTNNSADYIGGYSVTNRQANRGIAA 476

[Close]

BLAST of CsaV3_1G017060 vs. TrEMBL
Match: tr|A0A2N9IXN4|A0A2N9IXN4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58019 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 7.6e-149
Identity = 320/479 (66.81%), Postives = 362/479 (75.57%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+PGKLFIGGISWDT+EDRLREYF+ FGEVVE +IM+DRATGRARGFGFVVFADP AA R
Sbjct: 10  MEPGKLFIGGISWDTNEDRLREYFQCFGEVVEAVIMKDRATGRARGFGFVVFADPTAAER 69

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKHVIDGRTVEAKKAVPRDDQNIL+RNN+ I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 70  VVMEKHVIDGRTVEAKKAVPRDDQNILNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 129

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEESVE VLYKTFHELNGK+VEVKRAV
Sbjct: 130 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEESVENVLYKTFHELNGKLVEVKRAV 189

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSD-GRFSPVTVGRGG 240
           PKE SP P+R QL GY +   RV S LNGYNQGYNP++VGGYGLR D GRFSPVTVGR G
Sbjct: 190 PKELSPGPSRGQLGGYNYGLSRV-SLLNGYNQGYNPSSVGGYGLRLDGGRFSPVTVGRSG 249

Query: 241 LSPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYS-G 300
             P SPGYG G N+E XXXXXXXXXXXXX        XXXXXXXX  R  + NP+ Y  G
Sbjct: 250 FPPFSPGYGTGPNIEXXXXXXXXXXXXXXSNLGFGRAXXXXXXXXSNR--NVNPIGYGVG 309

Query: 301 GGGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLG 360
            GGN SILSSS +NLWGN S +  TN+++     GSG  +       NIG LW +     
Sbjct: 310 NGGNSSILSSSSRNLWGNGSLNYATNATNPNALLGSGSGNXXXXXFGNIGALWSSXXXXX 369

Query: 361 HGENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDE 420
            G  AGS++ +                     R+ GT+V+ AS Y+A N Y+  + +  E
Sbjct: 370 KGGGAGSTYGS-GXXXXXXXXXXXXXXXXXXXRNSGTSVAPASSYAASNGYNGGYEDIYE 429

Query: 421 GNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
           G +FYG  +W+SLP+ELE S S G+GLGNAASDV+SRN+ GY  GY V+NRQSNRGIAA
Sbjct: 430 G-SFYGEPTWRSLPSELEGSGSFGYGLGNAASDVLSRNSGGYVGGYTVTNRQSNRGIAA 483

[Close]

BLAST of CsaV3_1G017060 vs. TrEMBL
Match: tr|A0A067KN54|A0A067KN54_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09513 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.7e-148
Identity = 300/479 (62.63%), Postives = 359/479 (74.95%), Query Frame = 0


Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+ GKLFIGGISWDT+EDRLREYF+ +GEV+E +IM+DRATGRARGFGFVVFADPV A R
Sbjct: 1   MELGKLFIGGISWDTNEDRLREYFQAYGEVMEAVIMKDRATGRARGFGFVVFADPVVAER 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSPGPTRTKKIFVGGLASTVTESD 120
           VV+EKH+IDGR VEAKKAVPR+DQNIL+R N++ I GSPGP RTKKIFVGGLASTVTE+D
Sbjct: 61  VVMEKHLIDGRNVEAKKAVPREDQNILNRSNSSSIHGSPGPARTKKIFVGGLASTVTEND 120

Query: 121 FKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 180
           FKKYFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL+KTFHELNGKMVEVKRA
Sbjct: 121 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKRA 180

Query: 181 VPKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGG 240
           VPKE SP P R+ L+GY +   RVGS LN Y QGYNP+  GG G+R DGRFSPVTVGR  
Sbjct: 181 VPKELSPGPTRSPLSGYNYGASRVGSILNSYTQGYNPSPTGGLGVRMDGRFSPVTVGRSN 240

Query: 241 LSPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGG 300
            SP  PG+GMGLN E                       XXXXXXXXXRY   NP+ ++GG
Sbjct: 241 FSPFGPGFGMGLNFE-QGLSPSYGGNSNLSSNLGYGRIXXXXXXXXXRY--DNPIGFNGG 300

Query: 301 -GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLG 360
            GGN S+L+S+ + LWGN + +  +NS+    F G G  ++G SS  +IG LWG+SA+  
Sbjct: 301 NGGNSSVLNSTARTLWGNGNINHASNSTSSSNFMGPGTGNSGMSSFGSIGALWGSSANSV 360

Query: 361 HGENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDE 420
            G  AGS++N+ +L + NGD     G  VGY R+ GTNV+  S ++A   YD  + +  E
Sbjct: 361 QGGGAGSTYNSGSLSYNNGDFGVGLG-GVGYGRNSGTNVAPVSSHAAS--YDGSYEDIYE 420

Query: 421 GNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 478
             + YG S+W+S   ELE S S GFGLGNAASDV+SRN+AGY  GY V++RQ+NRGIAA
Sbjct: 421 NGSLYGDSAWRSSALELEGSGSFGFGLGNAASDVVSRNSAGYVGGYSVASRQANRGIAA 473

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139532.1	6.7e-250	100.00	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN65038...	[more]
XP_022142553.1	1.1e-236	94.35	heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia] >XP_022142555.1 ...	[more]
XP_008463611.1	7.2e-236	94.56	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo]	[more]
XP_023520385.1	1.0e-229	92.26	heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_023520384.1	1.0e-229	92.26	heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of CsaV3_1G017060 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07810.2	5.2e-103	53.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.4	4.3e-97	45.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	2.7e-91	46.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.3	5.8e-86	44.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	2.7e-59	53.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CsaV3_1G017060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W034\|RNP1_ARATH	4.9e-58	53.97	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
sp\|Q96DH6\|MSI2H_HUMAN	1.5e-46	45.54	RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1	[more]
sp\|Q920Q6\|MSI2H_MOUSE	1.5e-46	45.54	RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1	[more]
sp\|O43347\|MSI1H_HUMAN	5.2e-44	43.64	RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1	[more]
sp\|Q61474\|MSI1H_MOUSE	8.9e-44	43.64	RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1	[more]

BLAST of CsaV3_1G017060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTE8\|A0A0A0LTE8_CUCSA	4.5e-250	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1	[more]
tr\|A0A1S3CK54\|A0A1S3CK54_CUCME	4.8e-236	94.56	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350172...	[more]
tr\|A0A061GHM1\|A0A061GHM1_THECC	7.6e-149	65.97	RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030384 PE...	[more]
tr\|A0A2N9IXN4\|A0A2N9IXN4_FAGSY	7.6e-149	66.81	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58019 PE=4 SV=1	[more]
tr\|A0A067KN54\|A0A067KN54_JATCU	1.7e-148	62.63	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09513 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034131	DAZAP1_RRM2
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G017060.1	CsaV3_1G017060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 105..177 e-value: 1.8E-24 score: 97.3 coord: 5..76 e-value: 3.9E-23 score: 92.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 106..164 e-value: 8.9E-17 score: 60.6 coord: 6..72 e-value: 2.3E-16 score: 59.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 104..181 score: 17.967
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 4..80 score: 18.035
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 3..86 e-value: 4.6E-25 score: 89.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 97..189 e-value: 6.1E-26 score: 92.6
None	No IPR available	PANTHER	PTHR44291	FAMILY NOT NAMED	coord: 1..476
None	No IPR available	CDD	cd12325	RRM1_hnRNPA_hnRNPD_like	coord: 6..76 e-value: 6.1231E-35 score: 124.235
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 102..181 e-value: 3.09695E-47 score: 158.298
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 100..202
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 3..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G017060	CSPI01G15780	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G017060	Cucsa.180480	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G017060	CmaCh13G003830	Cucurbita maxima (Rimu)	cmacucB0255
CsaV3_1G017060	CmaCh18G006000	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G017060	CmoCh13G004080	Cucurbita moschata (Rifu)	cmocucB0241
CsaV3_1G017060	CmoCh18G005940	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G017060	Cp4.1LG09g06540	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G017060	Cp4.1LG20g06600	Cucurbita pepo (Zucchini)	cpecucB0629
CsaV3_1G017060	CsGy1G015480	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G017060	Carg25613	Silver-seed gourd	carcucB0056
CsaV3_1G017060	Carg25112	Silver-seed gourd	carcucB1084
CsaV3_1G017060	Cla009042	Watermelon (97103) v1	cucwmB057
CsaV3_1G017060	MELO3C025543	Melon (DHL92) v3.5.1	cucmeB014
CsaV3_1G017060	ClCG01G010610	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G017060	Lsi02G011240	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G017060	MELO3C025543.2	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G017060	Cla97C01G010390	Watermelon (97103) v2	cucwmbB008
CsaV3_1G017060	Bhi08G000631	Wax gourd	cucwgoB039

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_1G017060	CsaV3_UNG051390	Cucumber (Chinese Long) v3	cuccucB056

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G017060	Silver-seed gourd	carcucB1083
CsaV3_1G017060	Cucurbita maxima (Rimu)	cmacucB0241
CsaV3_1G017060	Cucurbita moschata (Rifu)	cmocucB0228