Carg25112 (gene) Silver-seed gourd

Overview
NameCarg25112
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionheterogeneous nuclear ribonucleoprotein 1
LocationCucurbita_argyrosperma_scaffold_211 : 54715 .. 58157 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTGGCAAGCTTTTCATTGGTGGGATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGGGAAGTGGTGGAGGTGATGATCATGAGGGATCGAACCACTGGCCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTGATTGATGGAAGAACTGTAAGTCTTGTCTATTGTTCTTGATTTCATTGATCTTTCCCATTTGTATTGGAAGCTTTAGATGTCGTTCATGGCTTGTTCGAGTTTGTGTTCTGATTTGATTTTGCGTGTTGATATGCTCGTGGAAGGATTAAGGTTTTCCCGATGTTCTTTGGTGTTCATCGTGATTCGAACTTATTACAATTCTTCAGTTTTTGTGGAAGTATGATGCCTATGTATGTGCTCGGAATGTTAATGGGTTCGCTTAGAATCAATTGCTTATATAACGTGAAAAATAACGTTTAAGAGTTTGCTCCTTGGTTTTGTTAGAAAGTTTGAATATCTGAAGTGTGAGATCTCGTATTGGTTGGGGAGGAGAATGAAACATTCTTTATAAAGGTGTGAAAACCTCTCTCTAGTAGACACGTTTTAAAAACCTTGAGGGAAAGCCCAAAGAGGACAATATCTGCTAACAGTGGAGTTGGGCTGTTACAGTTGATATCAGAGCCAGACACGGGAGGGCGTGCCAATGAGGACACTGGATCCTGAAGTGGGTGGATTGTGAGATCACACATCGGTTGAGGAGAAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCGTATCAAACACGTTTTAAAAACCTTAAGGGGAAGCCCGAAAGGGAAAGCCAAAAAGGACAATATCTGCTAGCGGTGGACTTGGGCTGTTACGTAAAGAATGCGGTAGATAGATCCTAAAGCTATGCCAATTGTTATCTCATAAAGTTCGTGTATGCACGGACACTAGGATTTATGTGTGATGATCACCACTTGAATTACAATGATATGTTCCGTTGCATCTCGACTTCTATTTGTACCGGTAACGAGAGTAAACTCTATCATTTTCATGTTTAGATGTTTATTTTTTTTTTCAGGTTGAAGCAAAGAAGGCCGTTCCTCGAGACGATCAAAACGTTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCAGGTCCTACTCGCACGAAAAAGATATTCGTAGGAGGTTTGGCATCAACTGTTACGGAGAGTGACTTCAAAACGTATTTTGATCAGTTTGGAACAATCACAGACGTCGTGGTGATGTACGATCATAATACTCAGAGACCGAGAGGTTTCGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTTTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAACCGAAGTCAATTAGGTGCATACCCTTATGGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAACCCGACCTCGGTTGGGGCATATGGATTGAGATCTGATGATAGGTTTAGTCCTGTTACAGTTGGTCGGGGTGGACTTTCTCCGATCAGTCCTGGTTATGGAATCGGGCTAAATCTCGATACAGGGTTGAACCCGAACTATGGGACAGGTCTCAATGTTGGCTCTAACCTTAGCTATGGACGAGTAATGAGCCCTTCATATGGTGGAAATTTGAATAGGTATGGTAGCCCGAACCCCATGGTGTATGGTGGTGGCAATGGAGGTAATGGTTCGATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCGGGAACTCTGTTGGTACAAACTCGTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCGTTGAACGGTATCGGAGGGCTTTGGGGTGCTTCTGCAAGCCTAGTTCATGGGGAACATTCTGGTTCTCCATTCAATGCTGTTAATCTTGACTTTGCGAGCGGCGATGGCAGCTTAACGTCGGGAACGACTGTAGGTTATGCTAGAAGCGTTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATATATGATGAGGTTCATGGGAACAATGATGAAGGAAACTCATTTTATGGGCATTCCAGTTGGCAGTTGTTACCGACCGAGCTCGAGGATTCTTCGTCGGTTGGTTTCGGGCTTGGGAATGCAGCTTCGGATGTTATTAGTAGAAACAATGGTGGTTATACTGTCGGATATGGTGTTTCTAATAGACAATCTAATAGAGGTGAGTCTTTCCTTTTTCTAGCTTTATGATGAATGATCTTGTTTTTGTGGATTCCTAATGTTCTGTCCTCCTAAATGTTAGACTAGTAAACGATGCGTTCTACGACTGGATAACGTTTGCTTTTTCTAAGAAGTTGTTCGTAGTCCCTATTCCCTAAGCTTTTCAATGCAAGTTAGCTCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTAAGGTTTTCAAAACATGTCTGCTAGGGAGAGGTTTCGATACTCTTATAGAGAATGTGTCATTCTCTTCCCCAACCGATGTGGGATCTCACAACCCACCCTCCTCTCCCTTCGAGGCGCAGCGTTCTCACTGGCACTCGTTCCCTTCACCAATCGATGTGGAACTCCTCAATTCACCCTCCTTCAGGGTCCAGCGTCCTTGCTGCCACACCGCCTCATGTCCACCCCCCTTTCGGGATCAACCACCTCACTGGTACATCGCCCGGTGTCTGACTCTGATACCATTTGTAACAATCCAAGCCCAACCCCACTAGCAGATATTGTCCTTTTTAGGCTTTCCCTCAAGGTTTTTAAAACACCTATGCTAGGGAGAGGTTTCCATACCCTTATAGAGAATGTGTCGTTCTCTTCTCCAATCGATGTGGGATCTCACAACCCACCCCCCTCCCCCCTTCGGGGCCCAGCGTCCTTCTTCAGGGTTCAGCGTCCTTGCTGCCACACCGCCTCATGTCCACCCCCCTTCTGGGCTCAGCCACCTCACTGGCACATCGCCCGATGTCTAGCTCTGATACCATTTGTAACAATCCAAGCCCACCACTAGTAGATATTGTCCTCTTTGGACTTTTCCTTCCAAACTTCCCCTCAAGGTTTTTAAAACGCGTCTGTTAAGGAGAGGTTTCCACACCCTTATTAAGAATGCTTCATTCTCCTGTCCAACCGATGTGGGATCTCACCCTACAAATCTAAGAACTAAACCCATTCCTAAGCTTTTGGGGAACTTGAAATCATTAAAGCTCATGATCTTCTCCCAACTAGACTCAATTATTCGGTTAGAAATCTCGAACAGAGGTGGAACAAAAGCTGATTGGTAAAATGTTTGATTGATGATTCAGGAATTGCTGCTTAG

mRNA sequence

ATGGATCCTGGCAAGCTTTTCATTGGTGGGATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGGGAAGTGGTGGAGGTGATGATCATGAGGGATCGAACCACTGGCCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTGATTGATGGAAGAACTGTTGAAGCAAAGAAGGCCGTTCCTCGAGACGATCAAAACGTTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCAGGTCCTACTCGCACGAAAAAGATATTCGTAGGAGGTTTGGCATCAACTGTTACGGAGAGTGACTTCAAAACGTATTTTGATCAGTTTGGAACAATCACAGACGTCGTGGTGATGTACGATCATAATACTCAGAGACCGAGAGGTTTCGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTTTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAACCGAAGTCAATTAGGTGCATACCCTTATGGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAACCCGACCTCGGTTGGGGCATATGGATTGAGATCTGATGATAGGTTTAGTCCTGTTACAGTTGGTCGGGGTGGACTTTCTCCGATCAGTCCTGGTTATGGAATCGGGCTAAATCTCGATACAGGGTTGAACCCGAACTATGGGACAGGTCTCAATGTTGGCTCTAACCTTAGCTATGGACGAGTAATGAGCCCTTCATATGGTGGAAATTTGAATAGGTATGGTAGCCCGAACCCCATGGTGTATGGTGGTGGCAATGGAGGTAATGGTTCGATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCGGGAACTCTGTTGGTACAAACTCGTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCGTTGAACGGTATCGGAGGGCTTTGGGGTGCTTCTGCAAGCCTAGTTCATGGGGAACATTCTGGTTCTCCATTCAATGCTGTTAATCTTGACTTTGCGAGCGGCGATGGCAGCTTAACGTCGGGAACGACTGTAGGTTATGCTAGAAGCGTTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATATATGATGAGGTTCATGGGAACAATGATGAAGGAAACTCATTTTATGGGCATTCCAGTTGGCAGTTGTTACCGACCGAGCTCGAGGATTCTTCGTCGGTTGGTTTCGGGCTTGGGAATGCAGCTTCGGATGTTATTAGTAGAAACAATGGTGGTTATACTGTCGGATATGGTGTTTCTAATAGACAATCTAATAGAGGAATTGCTGCTTAG

Coding sequence (CDS)

ATGGATCCTGGCAAGCTTTTCATTGGTGGGATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGGGAAGTGGTGGAGGTGATGATCATGAGGGATCGAACCACTGGCCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTGATTGATGGAAGAACTGTTGAAGCAAAGAAGGCCGTTCCTCGAGACGATCAAAACGTTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCAGGTCCTACTCGCACGAAAAAGATATTCGTAGGAGGTTTGGCATCAACTGTTACGGAGAGTGACTTCAAAACGTATTTTGATCAGTTTGGAACAATCACAGACGTCGTGGTGATGTACGATCATAATACTCAGAGACCGAGAGGTTTCGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTTTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAACCGAAGTCAATTAGGTGCATACCCTTATGGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAACCCGACCTCGGTTGGGGCATATGGATTGAGATCTGATGATAGGTTTAGTCCTGTTACAGTTGGTCGGGGTGGACTTTCTCCGATCAGTCCTGGTTATGGAATCGGGCTAAATCTCGATACAGGGTTGAACCCGAACTATGGGACAGGTCTCAATGTTGGCTCTAACCTTAGCTATGGACGAGTAATGAGCCCTTCATATGGTGGAAATTTGAATAGGTATGGTAGCCCGAACCCCATGGTGTATGGTGGTGGCAATGGAGGTAATGGTTCGATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCGGGAACTCTGTTGGTACAAACTCGTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCGTTGAACGGTATCGGAGGGCTTTGGGGTGCTTCTGCAAGCCTAGTTCATGGGGAACATTCTGGTTCTCCATTCAATGCTGTTAATCTTGACTTTGCGAGCGGCGATGGCAGCTTAACGTCGGGAACGACTGTAGGTTATGCTAGAAGCGTTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATATATGATGAGGTTCATGGGAACAATGATGAAGGAAACTCATTTTATGGGCATTCCAGTTGGCAGTTGTTACCGACCGAGCTCGAGGATTCTTCGTCGGTTGGTTTCGGGCTTGGGAATGCAGCTTCGGATGTTATTAGTAGAAACAATGGTGGTTATACTGTCGGATATGGTGTTTCTAATAGACAATCTAATAGAGGAATTGCTGCTTAG

Protein sequence

MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLDTGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Homology
[Close]
BLAST of Carg25112 vs. NCBI nr
Match: XP_022927354.1 (heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 877.5 bits (2266), Expect = 2.1e-251
Identity = 478/478 (100.00%), Postives = 478/478 (100.00%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300
           SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN
Sbjct: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300

Query: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360
           GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]
BLAST of Carg25112 vs. NCBI nr
Match: XP_022927353.1 (heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 877.5 bits (2266), Expect = 2.1e-251
Identity = 478/478 (100.00%), Postives = 478/478 (100.00%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272

Query: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300
           SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN
Sbjct: 273 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 332

Query: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360
           GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392

Query: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452

Query: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]
BLAST of Carg25112 vs. NCBI nr
Match: XP_023520385.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 875.9 bits (2262), Expect = 6.1e-251
Identity = 477/478 (99.79%), Postives = 478/478 (100.00%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300
           SPISPGYGIGLNL+TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN
Sbjct: 241 SPISPGYGIGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300

Query: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360
           GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]
BLAST of Carg25112 vs. NCBI nr
Match: XP_023520384.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 875.9 bits (2262), Expect = 6.1e-251
Identity = 477/478 (99.79%), Postives = 478/478 (100.00%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272

Query: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300
           SPISPGYGIGLNL+TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN
Sbjct: 273 SPISPGYGIGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 332

Query: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360
           GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392

Query: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452

Query: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]
BLAST of Carg25112 vs. NCBI nr
Match: XP_023001332.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 873.2 bits (2255), Expect = 4.0e-250
Identity = 475/478 (99.37%), Postives = 477/478 (99.79%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300
           SPISPGYGIGLNL+TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN
Sbjct: 241 SPISPGYGIGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300

Query: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360
           GGN SILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 301 GGNSSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]
BLAST of Carg25112 vs. TAIR10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 367.5 bits (942), Expect = 1.3e-101
Identity = 264/497 (53.12%), Postives = 309/497 (62.17%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLFIGGISWDT+E+RL+EYF SFGEV+E +I++DRTTGRARGFGFVVFADP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNVLSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 121
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 122 FKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 181
           FKTYF+QFGT TDVVVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 182 VPKESSPVPNRSQLGA-YPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRG 241
           VPKE SP P+RS LGA Y YG  RV + LNGY QG+NP +VG YGLR D RFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 242 GLSPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGG 301
           G +  S GYG+ +N D           XXXXXXXXXXXXXXXXXXXXXR+G   P V   
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTXXXXXXXXXXXXXXXXXXXXXRFG---PAVGYE 303

Query: 302 GNGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASL 361
           G                                                + G +G S   
Sbjct: 304 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGPFGNSG-- 363

Query: 362 VHGEHSGSPFNAV---NLDF---ASGDGSLTSGTTVGYARSVGTN----VSSASLYSAPN 421
           V+    G   NAV   N+ F    +G+     GT    AR+ G N     SS S  SA N
Sbjct: 364 VNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATN 423

Query: 422 I--YD-----EVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNA--ASDVISRNNG 476
              YD     E +GN     + Y   +W+    E E  +   +G+G    +SDV +R++ 
Sbjct: 424 NTGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSS 483

[Close]
BLAST of Carg25112 vs. TAIR10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 357.1 bits (915), Expect = 1.7e-98
Identity = 231/505 (45.74%), Postives = 287/505 (56.83%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+  KLFIGGISW+T EDRLR+YF SFGEV+E +IM+DR TGRARGFGFVVFADP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 61  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNVLSRNNTGILGSP 120
           VVL KH+IDG+                       VEAKKAVPRDD  V +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 121 GPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESV 180
           GP+ +KKIFVGGLAS+VTE++FK YF QFG ITDVVVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 181 EKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTS 240
           +KVL KTFHELNGKMVEVK AVPK+ +    R+Q+    +G  R+ S LN Y QG++P+ 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 241 VGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXX 300
           +  YG++ + R+SP    RGG SP   GYGI LN +                        
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFE----PNQTQNYGSGSSGGFGRPFS 302

Query: 301 XXXXXXXXRYGSPNPMVYGGGNGGNGSILSSSVQN-LWGNVGNSVGTNSSHLR-TFPGSG 360
                   R+GS   M  GG + GNGS+L+++ +N LWGN G    +NS   R +F G+ 
Sbjct: 303 PGYAASLGRFGS--QMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNS 362

Query: 361 GVHTGTNSLNGIGGLWGASA---SLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARS 420
           G+    +SL  IG  WG  A   S  HGE  G    A+             G  VG    
Sbjct: 363 GM----SSLGSIGDNWGTVARARSSYHGERGGVGLEAMR------------GVHVG---- 422

Query: 421 VGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDV 479
            G +  S+ L               E +S Y  S W  LP + E+      GLG    D 
Sbjct: 423 -GYSSGSSIL---------------EADSLYSDSMWLSLPAKAEE------GLGMGPLDF 453

[Close]
BLAST of Carg25112 vs. TAIR10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 325.9 bits (834), Expect = 4.3e-89
Identity = 228/496 (45.97%), Postives = 275/496 (55.44%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLFIGGISWDTDE+RL+EYF  +G++VE +IMRDRTTGRARGFGF+VFADP VA RV
Sbjct: 13  DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGIL-------GSPGPTRTKKIFVGGLAST 121
           +++KH+IDGRTVEAKKAVPRDDQ VL R+ + +        G+ G  RTKKIFVGGL S+
Sbjct: 73  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132

Query: 122 VTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMV 181
           +TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT++SEESV+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192

Query: 182 EVKRAVPKE-SSPVPNRSQLGAYPYGFGRV-GSYLNGYNQGYNPTSVGAYGLRSDDRFSP 241
           EVKRAVPKE SS  PNRS L  Y   +G V                       S  RFSP
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVXXXXXXXXXXXXXXXXXXXXXXXSAGRFSP 252

Query: 242 VTVGRGGLSPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPN 301
           +  GR   S    G    LNL++                               RY SP 
Sbjct: 253 IGSGRNAFSSFGLGLNQELNLNS-------NFDGNTLGYSRIPGNQYFNSASPNRYNSPI 312

Query: 302 PMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPG-SGGVHTGTNSLNGIGGL 361
                G N G+ S  + S ++LWGN  +S G         PG + GV  G N      G 
Sbjct: 313 -----GYNRGD-SAYNPSNRDLWGNRSDSSG---------PGWNLGVSVGNNR-----GN 372

Query: 362 WGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARS--VGTNVSSASLYSAPNI 421
           WG S                         S+ S    GY RS   G+ +S  S     N 
Sbjct: 373 WGLS-------------------------SVVSDNN-GYGRSYGAGSGLSGLSFAGNTNG 432

Query: 422 YDEVHGNNDEGNSFYGHSSW-QLLP-----TELED-SSSVGFGLGNAASDVISRNNGGYT 479
           +D   G    G+S Y  S+W Q +P      EL+  S S GFG+ N  SD  +  + GY+
Sbjct: 433 FDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYS 455

[Close]
BLAST of Carg25112 vs. TAIR10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 315.5 bits (807), Expect = 5.8e-86
Identity = 227/497 (45.67%), Postives = 284/497 (57.14%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLFIGGISWDTDE+RLR+YF ++G+VVE +IMRDR TGRARGFGF+VFADP V+ RV
Sbjct: 4   DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGI-LGSP---GPTRTKKIFVGGLASTVTE 121
           +++KH+IDGRTVEAKKAVPRDDQ VL R+ + I L SP   G  RTKKIFVGGL S++TE
Sbjct: 64  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123

Query: 122 SDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT++S+++V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183

Query: 182 RAVPKESSPVPN-RSQLGA-YPYGFGR----VGSYLNGYNQG---YNPTSVGAYGLRSDD 241
           RAVPKE SPV N RS L +   YG G       SY N +  G   YN  S+G  G     
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN--SLGPVG----R 243

Query: 242 RFSPVT-VGRGGLSPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 301
           RFSPV   GR  +S     +G+GLN D                                 
Sbjct: 244 RFSPVIGSGRNAVS----AFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNG---- 303

Query: 302 YGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPG-SGGVHTGTNSLN 361
             SPN      G+    S  +S+ ++LWGN  ++ G         PG +  V  G N   
Sbjct: 304 -ASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAG---------PGWNLNVSNGNNR-- 363

Query: 362 GIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSA 421
              G WG  +S                       S  S    G+ R+ GT   S+ L S+
Sbjct: 364 ---GNWGLPSS-----------------------SAVSNDNNGFGRNYGT---SSGLSSS 423

Query: 422 P-NIYDEVHGNNDEGNSFYGHSSW--QLLPT----ELED-SSSVGFGLGNAASDVISRNN 476
           P N ++   G    G S Y  S+W  Q LP+    EL++ S + G+ + N  SD  + + 
Sbjct: 424 PFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDP 445

[Close]
BLAST of Carg25112 vs. TAIR10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-59
Identity = 104/189 (55.03%), Postives = 146/189 (77.25%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLF+GGISW+TDED+LRE+F ++GEV + ++MRD+ TGR RGFGFV+F+DP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNVLSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 121
           + EKH ID R V+ K+A+ R++Q V  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 122 SDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +F+ YF+ +G +TDV +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 182 RAVPKESSP 187
           RA+PK+++P
Sbjct: 184 RALPKDANP 192

[Close]
BLAST of Carg25112 vs. Swiss-Prot
Match: sp|Q8W034|RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-58
Identity = 104/189 (55.03%), Postives = 146/189 (77.25%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLF+GGISW+TDED+LRE+F ++GEV + ++MRD+ TGR RGFGFV+F+DP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNVLSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 121
           + EKH ID R V+ K+A+ R++Q V  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 122 SDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +F+ YF+ +G +TDV +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 182 RAVPKESSP 187
           RA+PK+++P
Sbjct: 184 RALPKDANP 192

[Close]
BLAST of Carg25112 vs. Swiss-Prot
Match: sp|Q96DH6|MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.6e-47
Identity = 103/224 (45.98%), Postives = 135/224 (60.27%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD TT R+RGFGFV FADP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 122 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYG 224
           PKE   P   R +    PY    + +++ G      P  V  YG
Sbjct: 199 PKEVMFPPGTRGRARGLPY---TMDAFMLGMGMLGYPNFVATYG 227

[Close]
BLAST of Carg25112 vs. Swiss-Prot
Match: sp|Q920Q6|MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.6e-47
Identity = 103/224 (45.98%), Postives = 135/224 (60.27%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD TT R+RGFGFV FADP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 122 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYG 224
           PKE   P   R +    PY    + +++ G      P  V  YG
Sbjct: 199 PKEVMFPPGTRGRARGLPY---TMDAFMLGMGMLGYPNFVATYG 227

[Close]
BLAST of Carg25112 vs. Swiss-Prot
Match: sp|O43347|MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.3e-44
Identity = 105/235 (44.68%), Postives = 139/235 (59.15%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           DP K+FIGG+SW T ++ LREYF  FGEV E ++MRD  T R+RGFGFV F D     +V
Sbjct: 18  DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + + +H +D +T++ K A PR  Q  +             TRTKKIFVGGL+   T  D 
Sbjct: 78  LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 137

Query: 122 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K YF+QFG + D ++M+D  T R RGFGF+T+ESE+ VEKV    FHE+N KMVE K+A 
Sbjct: 138 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 197

Query: 182 PKE-SSPVPN-RSQLGAYPYGFGRVGSYLNGYNQ-GYNPTSVGAYGLRSDDRFSP 233
           PKE  SP  + R +    PYG   + +++ G    GY       Y  RS    +P
Sbjct: 198 PKEVMSPTGSARGRSRVMPYG---MDAFMLGIGMLGYPGFQATTYASRSYTGLAP 237

[Close]
BLAST of Carg25112 vs. Swiss-Prot
Match: sp|Q96EP5|DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-44
Identity = 101/240 (42.08%), Postives = 142/240 (59.17%), Query Frame = 0 

Query: 4   GKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVL 63
           GKLF+GG+ W T ++ LR YF  +GEVV+ +IM+D+TT ++RGFGFV F DP     V+ 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 64  EK-HVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTK--KIFVGGLASTVTESDF 123
            + H +DGR ++ K   PR  Q   +R   G    P    +K  KIFVGG+     E++ 
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129

Query: 124 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           + YF +FG +T+VV++YD   QRPRGFGFIT+E E+SV++ +   FH++ GK VEVKRA 
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189

Query: 184 PKES-SPVPNRSQLGAYPYGFGRVGSYLNG--------YNQGYNP--------TSVGAYG 224
           P++S S  P   Q GA  +G   V +  NG        + QGY P         ++G YG
Sbjct: 190 PRDSKSQAP--GQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247

[Close]
BLAST of Carg25112 vs. TrEMBL
Match: tr|A0A0A0LTE8|A0A0A0LTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1)

HSP 1 Score: 805.8 bits (2080), Expect = 5.1e-230
Identity = 440/478 (92.05%), Postives = 455/478 (95.19%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K YFDQFGTI DVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240
           PKESSPVPNR+QL  YP+ FGRVGSYLNGYNQGYNPT+VG YGLRSD RFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300
           SPISPGYG+GLNL+TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVY GG 
Sbjct: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGG- 300

Query: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360
           GGNGSILSSSVQNLWGNV  S GTNSSHLRTFPGSGGVHTGT+SLN IGGLWGASASL H
Sbjct: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360

Query: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GE++GS FN VNLDF +GD S TSGTTVGYARS+GTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           N+FYGHSSWQ LPTELEDSSS+GFGLGNAASDVISRNN GYTVGYGVSNRQSNRGIAA
Sbjct: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 477

[Close]
BLAST of Carg25112 vs. TrEMBL
Match: tr|A0A1S3CK54|A0A1S3CK54_CUCME (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501720 PE=4 SV=1)

HSP 1 Score: 796.6 bits (2056), Expect = 3.1e-227
Identity = 432/478 (90.38%), Postives = 443/478 (92.68%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDRTTGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K YFDQFGTI DVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240
           PKESSPVPNR+QL  YPY FGRVGSYLNGYNQGYNPTSVG YGLRSD RFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300
           SPISPGYG+G+NLD  XXXXXXXXXXXXXXXXXXXXXXXXXX    RYGSPNPMVYG   
Sbjct: 241 SPISPGYGMGINLD--XXXXXXXXXXXXXXXXXXXXXXXXXXGNLNRYGSPNPMVYGXXX 300

Query: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360
                ILSSSVQNLWGNV NS GTNSSHLRTFPGSGGVHTGTNSLN IGGLWG SASL H
Sbjct: 301 XXXXXILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GE+ GSPFN  NLDF +GD S TSGTTVGYARS+GTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENGGSPFNTANLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           N+FYGHSSWQ LPTELEDSSS+GFGLGNAASDVISRNN GYTVGYGVSNRQSNRGIAA
Sbjct: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGIAA 476

[Close]
BLAST of Carg25112 vs. TrEMBL
Match: tr|A0A2N9IXN4|A0A2N9IXN4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58019 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 4.4e-149
Identity = 318/479 (66.39%), Postives = 358/479 (74.74%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+PGKLFIGGISWDT+EDRLREYFQ FGEVVE +IM+DR TGRARGFGFVVFADP  A R
Sbjct: 10  MEPGKLFIGGISWDTNEDRLREYFQCFGEVVEAVIMKDRATGRARGFGFVVFADPTAAER 69

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKHVIDGRTVEAKKAVPRDDQN+L+RNN+ I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 70  VVMEKHVIDGRTVEAKKAVPRDDQNILNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 129

Query: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K YFDQFGTITDVVVMYDHNTQRPRGFGFITY+SEESVE VLYKTFHELNGK+VEVKRAV
Sbjct: 130 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEESVENVLYKTFHELNGKLVEVKRAV 189

Query: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSD-DRFSPVTVGRGG 240
           PKE SP P+R QLG Y YG  RV S LNGYNQGYNP+SVG YGLR D  RFSPVTVGR G
Sbjct: 190 PKELSPGPSRGQLGGYNYGLSRV-SLLNGYNQGYNPSSVGGYGLRLDGGRFSPVTVGRSG 249

Query: 241 LSPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGG 300
             P SPGYG G N++ XXXXXXXXXXXXX        XXXXXXXX  R  + NP+ YG G
Sbjct: 250 FPPFSPGYGTGPNIEXXXXXXXXXXXXXXSNLGFGRAXXXXXXXXSNR--NVNPIGYGVG 309

Query: 301 NGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLV 360
           NGGN SILSSS +NLWGN   +  TN+++     GSG  +        IG LW +     
Sbjct: 310 NGGNSSILSSSSRNLWGNGSLNYATNATNPNALLGSGSGNXXXXXFGNIGALWSSXXXXX 369

Query: 361 HGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDE 420
            G  +GS + +                     R+ GT+V+ AS Y+A N Y+  + +  E
Sbjct: 370 KGGGAGSTYGS-GXXXXXXXXXXXXXXXXXXXRNSGTSVAPASSYAASNGYNGGYEDIYE 429

Query: 421 GNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           G SFYG  +W+ LP+ELE S S G+GLGNAASDV+SRN+GGY  GY V+NRQSNRGIAA
Sbjct: 430 G-SFYGEPTWRSLPSELEGSGSFGYGLGNAASDVLSRNSGGYVGGYTVTNRQSNRGIAA 483

[Close]
BLAST of Carg25112 vs. TrEMBL
Match: tr|A0A067KN54|A0A067KN54_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09513 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 2.4e-147
Identity = 296/479 (61.80%), Postives = 354/479 (73.90%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLREYFQ++GEV+E +IM+DR TGRARGFGFVVFADPVVA R
Sbjct: 1   MELGKLFIGGISWDTNEDRLREYFQAYGEVMEAVIMKDRATGRARGFGFVVFADPVVAER 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSR-NNTGILGSPGPTRTKKIFVGGLASTVTESD 120
           VV+EKH+IDGR VEAKKAVPR+DQN+L+R N++ I GSPGP RTKKIFVGGLASTVTE+D
Sbjct: 61  VVMEKHLIDGRNVEAKKAVPREDQNILNRSNSSSIHGSPGPARTKKIFVGGLASTVTEND 120

Query: 121 FKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 180
           FK YFDQFGTITDVVVMYDHNTQRPRGFGFITY+SEE+V+KVL+KTFHELNGKMVEVKRA
Sbjct: 121 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKRA 180

Query: 181 VPKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGG 240
           VPKE SP P RS L  Y YG  RVGS LN Y QGYNP+  G  G+R D RFSPVTVGR  
Sbjct: 181 VPKELSPGPTRSPLSGYNYGASRVGSILNSYTQGYNPSPTGGLGVRMDGRFSPVTVGRSN 240

Query: 241 LSPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGG 300
            SP  PG+G+GLN +                       XXXXXXXXXRY   NP+ + GG
Sbjct: 241 FSPFGPGFGMGLNFE-QGLSPSYGGNSNLSSNLGYGRIXXXXXXXXXRY--DNPIGFNGG 300

Query: 301 NGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLV 360
           NGGN S+L+S+ + LWGN   +  +NS+    F G G  ++G +S   IG LWG+SA+ V
Sbjct: 301 NGGNSSVLNSTARTLWGNGNINHASNSTSSSNFMGPGTGNSGMSSFGSIGALWGSSANSV 360

Query: 361 HGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDE 420
            G  +GS +N+ +L + +GD  +  G  VGY R+ GTNV+  S ++A   YD  + +  E
Sbjct: 361 QGGGAGSTYNSGSLSYNNGDFGVGLG-GVGYGRNSGTNVAPVSSHAAS--YDGSYEDIYE 420

Query: 421 GNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
             S YG S+W+    ELE S S GFGLGNAASDV+SRN+ GY  GY V++RQ+NRGIAA
Sbjct: 421 NGSLYGDSAWRSSALELEGSGSFGFGLGNAASDVVSRNSAGYVGGYSVASRQANRGIAA 473

[Close]
BLAST of Carg25112 vs. TrEMBL
Match: tr|A0A1Q3AW25|A0A1Q3AW25_CEPFO (RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03421 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 2.4e-147
Identity = 307/480 (63.96%), Postives = 368/480 (76.67%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLREYFQ+FGEV+E +IM+DR TGRARGFGFVVFADP VA R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQTFGEVMEAVIMKDRATGRARGFGFVVFADPAVAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGP-TRTKKIFVGGLASTVTESD 120
           VV+EKH+IDGRTVEAKKAVPRDDQ +L+RNN  + GSP P  RTKKIFVGGL STVTE+D
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQIILNRNNNSVHGSPAPAARTKKIFVGGLPSTVTEND 122

Query: 121 FKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 180
           FK YFDQFG ITDVVVMYDHNTQRPRGFGFITY+SEE+V+KVL+KTFHEL+GKMVEVK+A
Sbjct: 123 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELSGKMVEVKKA 182

Query: 181 VPKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGG 240
           VPKE SP P+RS  G Y YG GRV ++LNGY QGYNP+S G YG+R D RFSPVTV R G
Sbjct: 183 VPKELSPGPSRSLSGIYNYGPGRVSNFLNGYTQGYNPSSYGGYGVRMDGRFSPVTVSRSG 242

Query: 241 LSPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGG 300
            SP  PGYGIGLN D+   XXXXXXXXXXXXXX    XXXXXXX     G   P+ YG  
Sbjct: 243 FSPFGPGYGIGLNFDSGLSXXXXXXXXXXXXXXHGRIXXXXXXXSSRYTG---PIGYG-- 302

Query: 301 NGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLV 360
            GG+GS++SS  +NLWGN   + GTNS+    F GS   ++G +S  GIG LWG S++ V
Sbjct: 303 -GGSGSVISSPSRNLWGNGNLNYGTNSTISNAFMGSESGNSGMSSFGGIGELWGLSSNSV 362

Query: 361 HGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSA-SLYSAPNIYDEVHGNND 420
            G  +GS ++  NL+  SGD  +     VGY R+ GTNV++  S  S+   Y+  + +  
Sbjct: 363 QGGGAGSAYSGSNLNLGSGD-FIAGSAAVGYGRNSGTNVAAGLSRASSNGGYEGAYADIY 422

Query: 421 EGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 479
           +  SF+G S+W+ +P+ELE S S GFGLG+AASDV+++N+ GY  GYGV+NRQS+RGIAA
Sbjct: 423 DDGSFFGDSTWRSVPSELEVSGSFGFGLGDAASDVMTKNSAGYVGGYGVTNRQSHRGIAA 475

The following BLAST results are available for this feature:
BLAST of Carg25112 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927354.12.1e-251100.00heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cucurbita moschata][more]
XP_022927353.12.1e-251100.00heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Cucurbita moschata][more]
XP_023520385.16.1e-25199.79heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita pepo subsp. pepo... [more]
XP_023520384.16.1e-25199.79heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita pepo subsp. pepo... [more]
XP_023001332.14.0e-25099.37heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita maxima][more]
BLAST of Carg25112 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07810.21.3e-10153.12RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G47620.41.7e-9845.74RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.14.3e-8945.97RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G55550.35.8e-8645.67RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G14300.11.6e-5955.03RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg25112 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8W034|RNP1_ARATH2.9e-5855.03Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
sp|Q96DH6|MSI2H_HUMAN8.6e-4745.98RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1[more]
sp|Q920Q6|MSI2H_MOUSE8.6e-4745.98RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1[more]
sp|O43347|MSI1H_HUMAN2.3e-4444.68RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1[more]
sp|Q96EP5|DAZP1_HUMAN3.1e-4442.08DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1[more]
BLAST of Carg25112 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTE8|A0A0A0LTE8_CUCSA5.1e-23092.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1[more]
tr|A0A1S3CK54|A0A1S3CK54_CUCME3.1e-22790.38heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350172... [more]
tr|A0A2N9IXN4|A0A2N9IXN4_FAGSY4.4e-14966.39Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58019 PE=4 SV=1[more]
tr|A0A067KN54|A0A067KN54_JATCU2.4e-14761.80Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09513 PE=4 SV=1[more]
tr|A0A1Q3AW25|A0A1Q3AW25_CEPFO2.4e-14763.96RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034131DAZAP1_RRM2
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25112-RACarg25112-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..76
e-value: 1.2E-22
score: 91.2
coord: 105..177
e-value: 3.7E-24
score: 96.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 6..72
e-value: 1.8E-15
score: 56.4
coord: 106..164
e-value: 1.4E-16
score: 59.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 104..181
score: 17.83
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 4..80
score: 17.848
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 3..86
e-value: 9.2E-25
score: 88.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 97..190
e-value: 7.7E-26
score: 92.2
NoneNo IPR availablePANTHERPTHR44291FAMILY NOT NAMEDcoord: 1..477
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 6..76
e-value: 1.6101E-35
score: 125.776
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 102..181
e-value: 1.40829E-47
score: 159.453
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 100..203
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 3..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25112Cla009042Watermelon (97103) v1carwmB1039
Carg25112Csa1G181500Cucumber (Chinese Long) v2carcuB1052
Carg25112MELO3C025543Melon (DHL92) v3.5.1carmeB1006
Carg25112ClCG01G010610Watermelon (Charleston Gray)carwcgB1011
Carg25112CSPI01G15780Wild cucumber (PI 183967)carcpiB1074
Carg25112Cucsa.180480Cucumber (Gy14) v1carcgyB1154
Carg25112CmaCh18G006000Cucurbita maxima (Rimu)carcmaB1436
Carg25112CmaCh13G003830Cucurbita maxima (Rimu)carcmaB1435
Carg25112CmoCh18G005940Cucurbita moschata (Rifu)carcmoB1391
Carg25112CmoCh13G004080Cucurbita moschata (Rifu)carcmoB1390
Carg25112Lsi02G011240Bottle gourd (USVL1VR-Ls)carlsiB947
Carg25112Cp4.1LG20g06600Cucurbita pepo (Zucchini)carcpeB1444
Carg25112Cp4.1LG09g06540Cucurbita pepo (Zucchini)carcpeB1443
Carg25112CsGy1G015480Cucumber (Gy14) v2carcgybB1021
Carg25112MELO3C025543.2Melon (DHL92) v3.6.1carmedB1017
Carg25112CsaV3_UNG051390Cucumber (Chinese Long) v3carcucB1085
Carg25112CsaV3_1G017060Cucumber (Chinese Long) v3carcucB1084
Carg25112Cla97C01G010390Watermelon (97103) v2carwmbB1098
Carg25112Bhi08G000631Wax gourdcarwgoB1217
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg25112Carg25613Silver-seed gourdcarcarB055
The following block(s) are covering this gene:
GeneOrganismBlock
Carg25112Cucumber (Gy14) v2carcgybB1020
Carg25112Wild cucumber (PI 183967)carcpiB1073
Carg25112Cucumber (Chinese Long) v2carcuB1051
Carg25112Cucumber (Chinese Long) v3carcucB1083
Carg25112Watermelon (Charleston Gray)carwcgB1012
Carg25112Watermelon (97103) v1carwmB1040
Carg25112Watermelon (97103) v2carwmbB1097
Carg25112Wax gourdcarwgoB1218