Carg25613 (gene) Silver-seed gourd

Overview
NameCarg25613
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionheterogeneous nuclear ribonucleoprotein 1
LocationCucurbita_argyrosperma_scaffold_223 : 199216 .. 202636 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTAAGTTTTTTGAATTCTTCTTTTGATTTTGCTAATAAATATGCTCATGGAAGGATCATGGTTTTCCTGATTGTTCTTTGGTGTTCTTCATGATTGAAACTTGTCACAACTCTTCTTACATTTACATTTTTTTCTGAGTTCAACAACTCGAGGATGAGAATTTGAACCTCTTGTTGAGGATTGTTGCTGAGTTTATAAGTAAGGAATACATCTCCATTAATATGAGGCCGTTTTGGGAAACCAAAAAGCAAGGTTACGAGAGCTTATACTCATACCATACCATTGTGGAGGTCTGGGATTCCTACCATGGTATCAAAGTCATGCCCTTAACTTAGCCATGTGAATAGAATTCTCAAATGTCGAATAAAGAAGTTGTGAGCCTCAAAGGTGTAGTCAAAAGTGACTCAAGTGGTGTGTCCCACGTTGGCTAATTTAGGGGTTTATAAGTAAGGAATACATCTCCATTAGTACGAGGCCTTTTGGGGCAACCAAATAGTGGACAATCATACCATTGTGGAGAGTCGTGGTTCCTAACACTAGTTAACGTCGAATCACTTTTGTTTTGAAAAACATATAAACTATAATTTTCCTTTGGAGCTTTGGATGGGAAGATTTGGCTGTCTGCATTTTATCAGGGTGAATTTTGTTTCATGTGGCTGTTCATATTTTTGTGGAAGTACAATGCCGCCTGCATTTGCCCCGAATTTCAATCGTTTCGGGAACCGATTGTTTATACATGTTCTAGAAAAGGTAATAAGCACGATGACAGTAAAGGAATTTATTTGCTCGAAAAAAAGGTTTGAAACTAGTTCAAGTGAGCATAACTCAATGGTACTTAGCTATACCCTCGACGGAGAAAGGACATCGGAAGAATTGAAACTCAGATTTGTGAAAATTCGGGGGCTCGATATCTTATGGAGTACGTGGATGCACGGACATTAGGATTTACATGTGATGTTCACCGCTTATATTAAAACGATACATTTTGTTGCGTCAAGATATATCTATTTGTATCACAATTAGAGTAAAGTTTATCATGTTCATGTTTCGATATCCATTTTTTTGTTTTAGGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTTAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGCTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTCAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAACGCCTCGCACCTGAGGACATTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACACGGGTTCTTCTCCATTCAATGGTGCTGGTAACGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGTGTTTCTAATACACAGTCGAATAGAGGTGAATCTCTCTCCCTCTCTTTCCTTCTTTTATTCTCTTTCCTTCTTTTATTCTCTTTCCTTCTTTTATTCTCTTTCCTTCTTTTATCGTCGTTACATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACTCTTTATAAAAGTGTGGAAACCTCTCCCTAGTAGACATGTTTTAAAAACCTTGAGGGTAAGTTCGAAGGGGAAATCCCAAAGAGGACAATATCTGCTAGCGGTGCATTACATCTCTACAAACATTAGATCTTCGAGCTTATTTATATCAGTTTAAGCATGATTAAAACGCAACGACATTACTTGAACAAGATCCGTTTATGAATGGTAAAATGTTTGTTTGATTCAGGAATTGCTGCTTAGGAAGAAGAAGATAGAAGCAACAGAAATCAAGAGTTTTATAATAGTAGGTGATGATGTTTTTGGTAATTGTGATACACTCCTCCTCCTCCGCCCCTTCCTCCTCCGCCTCCTCCGCCCCCTCCTCCGCCTCCTCCTCCCATATGACGATATGATACTGTGAGAGCTAATTTGTTTTCTGTTTTATGAAGTGTCCCATAAAAGAAAGCAGGTTCCAGAGGGTTTGGTTTTTGGGTTGAGCTTGAAAATATAGGTCTTTTCTTCCTTTCTTTACTTGTAATTTGATTTGATTGATATGTATAATTGGATTGTGGGTAAGGTATGATCATACGTTACTCCGACAAAGAAACGGTGTCACACGAACGAATCGACATCATATTTTTTCTTCTTTTCTTTGGTTTCGGGTTCGTTTTAGAACAACTCATTCAGGCTTTCTTCTTGTTGTTTCATCTCTTGATATTATCATTAGCGGTTCTGGGTTTTTACTTCTCATGTGATTGATTGTATGAAACTGAGGTTCATTCATTTAGAGATATATCATACTCTCCACCTACCTTCCTTCCAA

mRNA sequence

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTTAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGCTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTCAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAACGCCTCGCACCTGAGGACATTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACACGGGTTCTTCTCCATTCAATGGTGCTGGTAACGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCAGCTTCAGATGAATTGCTGCTTAGGAAGAAGAAGATAGAAGCAACAGAAATCAAGAGTTTTATAATAGTAGGTGATGATGTTTTTGGTAATTGTGATACACTCCTCCTCCTCCGCCCCTTCCTCCTCCGCCTCCTCCGCCCCCTCCTCCGCCTCCTCCTCCCATATGACGATATGATACTGTGAGAGCTAATTTGTTTTCTGTTTTATGAAGTGTCCCATAAAAGAAAGCAGGTTCCAGAGGGTTTGGTTTTTGGGTTGAGCTTGAAAATATAGGTCTTTTCTTCCTTTCTTTACTTGTAATTTGATTTGATTGATATGTATAATTGGATTGTGGGTAAGGTATGATCATACGTTACTCCGACAAAGAAACGGTGTCACACGAACGAATCGACATCATATTTTTTCTTCTTTTCTTTGGTTTCGGGTTCGTTTTAGAACAACTCATTCAGGCTTTCTTCTTGTTGTTTCATCTCTTGATATTATCATTAGCGGTTCTGGGTTTTTACTTCTCATGTGATTGATTGTATGAAACTGAGGTTCATTCATTTAGAGATATATCATACTCTCCACCTACCTTCCTTCCAA

Coding sequence (CDS)

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTTAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGCTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTCAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAACGCCTCGCACCTGAGGACATTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACACGGGTTCTTCTCCATTCAATGGTGCTGGTAACGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCAGCTTCAGATGAATTGCTGCTTAGGAAGAAGAAGATAGAAGCAACAGAAATCAAGAGTTTTATAATAGTAGGTGATGATGTTTTTGGTAATTGTGATACACTCCTCCTCCTCCGCCCCTTCCTCCTCCGCCTCCTCCGCCCCCTCCTCCGCCTCCTCCTCCCATATGACGATATGATACTGTGA

Protein sequence

SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDELLLRKKKIEATEIKSFIIVGDDVFGNCDTLLLLRPFLLRLLRPLLRLLLPYDDMIL
Homology
[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_022966755.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 879.4 bits (2271), Expect = 5.8e-252
Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRS+RSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSVRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_022925356.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 878.6 bits (2269), Expect = 9.9e-252
Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIG+NLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGVNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_023542103.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 877.9 bits (2267), Expect = 1.7e-251
Identity = 443/444 (99.77%), Postives = 443/444 (99.77%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGEN 
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_022142553.1 (heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia] >XP_022142555.1 heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia])

HSP 1 Score: 730.3 bits (1884), Expect = 4.4e-207
Identity = 378/454 (83.26%), Postives = 397/454 (87.44%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YFQ++GEVVEVMIMRDR TGRARGFGFVVF+DPV+AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVIAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITD VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQLG YPY FGRVGSYL+GYNQGYN  SVGGYGLRSDGRFSP++VGRGGL
Sbjct: 181 PKESSPVPNRNQLGGYPYGFGRVGSYLNGYNQGYNPASVGGYGLRSDGRFSPISVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLD                               NRYGSP+PM+YGGGS
Sbjct: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRYGSPNPMLYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNVGNSAG N+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGANSSHLRTFPGSGGVHTGTNSLNSIGGLWGASASLGH 360

Query: 364 GENTGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN G SPFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GENAG-SPFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 452

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_022927354.1 (heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 714.5 bits (1843), Expect = 2.5e-202
Identity = 371/454 (81.72%), Postives = 393/454 (86.56%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YFQ++GEVVEVMIMRDR TGRARGFGFVVF+DPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K YFDQFGTITD VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNR+QLGAYPY FGRVGSYL+GYNQGYN TSVG YGLRSD RFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLD                                RYGSP+PMVYGGG+
Sbjct: 241 SPISPGYGIGLNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYGGGN 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVG----H 363
           GGNGSILSSSVQNLWGNVGNS GTN+SHLRTFPGSGGVHTGT+SLNGIGGLWG      H
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 364 GENTGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GE++G SPFN A N++F +G      G+ VGY RS+ +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GEHSG-SPFN-AVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           EGNSFYGHSSWQ LPTELEDSSS+GFGLGNAASD
Sbjct: 421 EGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASD 452

[Close]
BLAST of Carg25613 vs. TAIR10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 371.7 bits (953), Expect = 7.1e-103
Identity = 187/266 (70.30%), Postives = 218/266 (81.95%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDT+E+RLK+YF ++GEV+E +I++DR TGRARGFGFVVF+DP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 124
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 125 FKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 184
           FK YF+QFGT TD VVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 185 VPKELSPVPNRNQLGA-YPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRG 244
           VPKELSP P+R+ LGA Y Y   RV + L+GY QG+N  +VGGYGLR DGRFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 245 GLSPISPGYGIGLNLDAGLNLNYGTG 268
           G +  S GYG+ +N D GL   +  G
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGG 269

[Close]
BLAST of Carg25613 vs. TAIR10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-99
Identity = 217/459 (47.28%), Postives = 282/459 (61.44%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNILSRNNTGILGSP 123
           VVL KH+IDG+                       VEAKKAVPRDD  + +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 124 GPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESV 183
           GP+ +KKIFVGGLAS+VTE++FKKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 184 EKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTS 243
           +KVL KTFHELNGKMVEVK AVPK+++    RNQ+    +   R+ S L+ Y QG++ + 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 244 VGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMS 303
           + GYG++ + R+SP    RGG SP   GYGI LN +     NYG+G +G     +GR  S
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFS 302

Query: 304 SSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSG 363
             Y  +L R+G  S M  GG S GNGS+L+++ +N LWGN G    +N+   R +F G+ 
Sbjct: 303 PGYAASLGRFG--SQMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNS 362

Query: 364 GVHTGTSSLNGIGGLWGVGHGENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLY 423
           G+    SSL  IG  WG      +      G   +E   G  V GY        S +S+ 
Sbjct: 363 GM----SSLGSIGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL 422

Query: 424 SAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIG 439
                         E +S Y  S W SLP + E+   +G
Sbjct: 423 --------------EADSLYSDSMWLSLPAKAEEGLGMG 430

[Close]
BLAST of Carg25613 vs. TAIR10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 322.4 bits (825), Expect = 5.0e-88
Identity = 218/463 (47.08%), Postives = 269/463 (58.10%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDTDE+RL++YF  YG++VE +IMRDR TGRARGFGF+VF+DP VA RV
Sbjct: 13  DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGIL-------GSPGPTRTKKIFVGGLAST 124
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + +        G+ G  RTKKIFVGGL S+
Sbjct: 73  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132

Query: 125 VTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMV 184
           +TE++FK YFDQFGTI D VVMYDHNTQRPRGFGFIT++SEESV+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192

Query: 185 EVKRAVPKEL-SPVPNRNQLGAYPYSFGRV-GSYLSGYNQGYNTTSVGGYGLRSDGRFSP 244
           EVKRAVPKEL S  PNR+ L  Y  ++G V                       S GRFSP
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVXXXXXXXXXXXXXXXXXXXXXXXSAGRFSP 252

Query: 245 VTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSY--GGNLNRYGS 304
           +  GR   S     +G+GLN +  LN N+       + L Y R+  + Y    + NRY S
Sbjct: 253 IGSGRNAFS----SFGLGLNQELNLNSNF-----DGNTLGYSRIPGNQYFNSASPNRYNS 312

Query: 305 PSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGG 364
           P       G     S  + S ++LWGN  +S+G                         G 
Sbjct: 313 PI------GYNRGDSAYNPSNRDLWGNRSDSSGP------------------------GW 372

Query: 365 LWGVGHGENTGSSPFNGAGNVEFGNGGSVVGYGRS--IRSNVSSASLYSAPNIYDEVHGN 424
             GV  G N G+    G  +V   N     GYGRS    S +S  S     N +D   G 
Sbjct: 373 NLGVSVGNNRGNW---GLSSVVSDNN----GYGRSYGAGSGLSGLSFAGNTNGFDGSIGE 429

Query: 425 NEEGNSFYGHSSW-QSLP-----TELED-SSSIGFGLGNAASD 448
              G+S Y  S+W QS+P      EL+  S S GFG+ N  SD
Sbjct: 433 LYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSD 429

[Close]
BLAST of Carg25613 vs. TAIR10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 316.2 bits (809), Expect = 3.6e-86
Identity = 221/462 (47.84%), Postives = 281/462 (60.82%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDTDE+RL+ YF  YG+VVE +IMRDR TGRARGFGF+VF+DP V+ RV
Sbjct: 4   DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGI-LGSP---GPTRTKKIFVGGLASTVTE 124
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + I L SP   G  RTKKIFVGGL S++TE
Sbjct: 64  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +FK YFDQFGTI D VVMYDHNTQRPRGFGFIT++S+++V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183

Query: 185 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDG----RFSPV 244
           RAVPKE+SPV N     A   ++G  GS     N  +N  + G     S G    RFSPV
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGG-GSNRMPANSYFNNFAPGPGFYNSLGPVGRRFSPV 243

Query: 245 T-VGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSY--GGNLNRYGS 304
              GR  +S     +G+GLN D  LNLN  +    SS   Y R+ S+ Y  G + NRY S
Sbjct: 244 IGSGRNAVS----AFGLGLNHDLSLNLN-PSCDGTSSTFGYNRIPSNPYFNGASPNRYTS 303

Query: 305 PSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGG 364
           P       G     S  +S+ ++LWGN  ++AG         PG         +LN    
Sbjct: 304 PI------GHNRTESPYNSNNRDLWGNRTDTAG---------PG--------WNLN---- 363

Query: 365 LWGVGHGENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAP-NIYDEVHGNN 424
              V +G N G+     +  V   N G    YG       +S+ L S+P N ++   G  
Sbjct: 364 ---VSNGNNRGNWGLPSSSAVSNDNNGFGRNYG-------TSSGLSSSPFNGFEGSIGEL 422

Query: 425 EEGNSFYGHSSW--QSLPT----ELED-SSSIGFGLGNAASD 448
             G S Y  S+W  Q LP+    EL++ S + G+ + N  SD
Sbjct: 424 YRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSD 422

[Close]
BLAST of Carg25613 vs. TAIR10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 226.5 bits (576), Expect = 3.7e-59
Identity = 102/189 (53.97%), Postives = 144/189 (76.19%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLF+GGISW+TDED+L+++F  YGEV + ++MRD+ TGR RGFGFV+FSDP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 124
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +F++YF+ +G +TD  +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 185 RAVPKELSP 190
           RA+PK+ +P
Sbjct: 184 RALPKDANP 192

[Close]
BLAST of Carg25613 vs. Swiss-Prot
Match: sp|Q8W034|RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.7e-58
Identity = 102/189 (53.97%), Postives = 144/189 (76.19%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLF+GGISW+TDED+L+++F  YGEV + ++MRD+ TGR RGFGFV+FSDP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 124
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +F++YF+ +G +TD  +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 185 RAVPKELSP 190
           RA+PK+ +P
Sbjct: 184 RALPKDANP 192

[Close]
BLAST of Carg25613 vs. Swiss-Prot
Match: sp|Q920Q6|MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.7e-46
Identity = 98/213 (46.01%), Postives = 133/213 (62.44%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  D L+ YF  +GE+ E M+MRD  T R+RGFGFV F+DP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKE-LSPVPNRNQLGAYPYSFG--RVGSYLSGY 214
           PKE + P   R +    PY+     +G  + GY
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGY 219

[Close]
BLAST of Carg25613 vs. Swiss-Prot
Match: sp|Q9VVE5|MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-44
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  + L+ YF  YG++ E M+M+D  T R+RGFGFV FSDP    +V
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +DG+ V+ K A PR       R +  ++     TRTKKIFVGGL++  T  D 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPR-------RAHPKMV-----TRTKKIFVGGLSAPTTLEDV 146

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K YF+QFG I DA++M+D  T R RGFGF+T++SE+ V+KV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKEL 188
           PKE+
Sbjct: 207 PKEV 198

[Close]
BLAST of Carg25613 vs. Swiss-Prot
Match: sp|Q9C652|RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-44
Identity = 102/228 (44.74%), Postives = 143/228 (62.72%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D  KLF+GGI+ +T E+ LKQYF  YG V+E ++ +++ TG+ RGFGFV F++     + 
Sbjct: 4   DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDD-----------QNILSRNNTGI--LGSPGPT-RTKKIF 124
           + + H I G+ V+ +KA+ + +           +  + + N G+  + S G T RTKKIF
Sbjct: 64  LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123

Query: 125 VGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFH 184
           VGGL+S  TE +FK YF++FG  TD VVM+D  T RPRGFGF+TY+SE+SVE V+   FH
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183

Query: 185 ELNGKMVEVKRAVPKELSPVPNRNQLGAYP-YSFGRVGSYLSGYNQGY 218
           EL+ K VEVKRA+PKE     N N +   P YS  +   Y+   N GY
Sbjct: 184 ELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQN-GY 230

[Close]
BLAST of Carg25613 vs. Swiss-Prot
Match: sp|O43347|MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.6e-43
Identity = 103/236 (43.64%), Postives = 144/236 (61.02%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DP K+FIGG+SW T ++ L++YF  +GEV E ++MRD  T R+RGFGFV F D     +V
Sbjct: 18  DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + + +H +D +T++ K A PR  Q  +             TRTKKIFVGGL+   T  D 
Sbjct: 78  LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 137

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+ESE+ VEKV    FHE+N KMVE K+A 
Sbjct: 138 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 197

Query: 185 PKE-LSPVPN---RNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSP 236
           PKE +SP  +   R+++  Y      +G  + GY  G+  T+   Y  RS    +P
Sbjct: 198 PKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGY-PGFQATT---YASRSYTGLAP 237

[Close]
BLAST of Carg25613 vs. TrEMBL
Match: tr|A0A1S3CK54|A0A1S3CK54_CUCME (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501720 PE=4 SV=1)

HSP 1 Score: 707.6 bits (1825), Expect = 2.0e-200
Identity = 371/454 (81.72%), Postives = 390/454 (85.90%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YPY+FGRVGSYL+GYNQGYN TSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+G+NLD                            GNLNRYGSP+PMVYG   
Sbjct: 241 SPISPGYGMGINLD--XXXXXXXXXXXXXXXXXXXXXXXXXXGNLNRYGSPNPMVYGXXX 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
                ILSSSVQNLWGNV NSAGTN+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 301 XXXXXILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 364 GENTGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN G SPFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GEN-GGSPFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASD 450

[Close]
BLAST of Carg25613 vs. TrEMBL
Match: tr|A0A0A0LTE8|A0A0A0LTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1)

HSP 1 Score: 705.3 bits (1819), Expect = 9.9e-200
Identity = 370/454 (81.50%), Postives = 390/454 (85.90%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YP++FGRVGSYL+GYNQGYN T+VGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+GLNL+                                RYGSP+PMVY GG 
Sbjct: 241 SPISPGYGMGLNLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYGSPNPMVYSGG- 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV  SAGTN+SHLRTFPGSGGVHTGTSSLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360

Query: 364 GENTGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN GSS FN   N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GENAGSS-FNTV-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASD 451

[Close]
BLAST of Carg25613 vs. TrEMBL
Match: tr|B9HCV4|B9HCV4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G015700v3 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.4e-139
Identity = 272/451 (60.31%), Postives = 333/451 (73.84%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRLK+YF+ +GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MELGKLFIGGISWDTNEDRLKEYFRAFGEVLEAVIMKDRATGRARGFGFVVFADPAVAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGR VEAKKAVPR+DQN L++N++ + GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHLIDGRNVEAKKAVPREDQNTLNKNSSSVNGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           +KYFDQFG ITD VVMYDHNTQRPRGFGFITY+SEE+V++VL+KTFHELNGKMVEVKRAV
Sbjct: 123 RKYFDQFGVITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSP P RNQLG + YS  RV S+L+GY QGYN + VGGYG+R DGRFSPVT GR   
Sbjct: 183 PKELSPGPARNQLGGFNYSPSRVSSFLNGYTQGYNPSFVGGYGVRMDGRFSPVTAGRSNF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SP   GYG+GLN +  LN  YG   N SSN  YGRV S SY GN +RY   +P+ + GG+
Sbjct: 243 SPFGSGYGMGLNFEQVLNPVYGGNSNISSNAGYGRV-SPSYSGNASRYS--NPIGFSGGN 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG-VGHGEN 363
           GG+ S+L+    +LWGN   +  +N ++  +F  SG   +G  S + +G LWG   + E 
Sbjct: 303 GGSSSVLNPIAHSLWGNGSINHASNTTNSSSFMSSGTGSSGMGSFSSMGALWGSSANSEQ 362

Query: 364 TGSSPFNGAGNVEFGNGG-----SVVGYGRSIRSNVSSASLYSAPN-IYDEVHGNNEEGN 423
            G      + N+ FG G        VGYGR+ R+ V+ AS ++A N  YD  + +  E  
Sbjct: 363 GGGVRAVNSSNLSFGGGDFDIGLEGVGYGRNSRTGVAPASSHAASNGGYDGAYADFYEKG 422

Query: 424 SFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           S YG ++WQS P+EL+ S S GFGLGNA SD
Sbjct: 423 SLYGDNTWQSSPSELDVSGSFGFGLGNATSD 450

[Close]
BLAST of Carg25613 vs. TrEMBL
Match: tr|A0A067KN54|A0A067KN54_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09513 PE=4 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 2.8e-138
Identity = 276/455 (60.66%), Postives = 331/455 (72.75%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ YGEV+E +IM+DR TGRARGFGFVVF+DPVVA R
Sbjct: 1   MELGKLFIGGISWDTNEDRLREYFQAYGEVMEAVIMKDRATGRARGFGFVVFADPVVAER 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSPGPTRTKKIFVGGLASTVTESD 123
           VV+EKH+IDGR VEAKKAVPR+DQNIL+R N++ I GSPGP RTKKIFVGGLASTVTE+D
Sbjct: 61  VVMEKHLIDGRNVEAKKAVPREDQNILNRSNSSSIHGSPGPARTKKIFVGGLASTVTEND 120

Query: 124 FKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 183
           FKKYFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL+KTFHELNGKMVEVKRA
Sbjct: 121 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKRA 180

Query: 184 VPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGG 243
           VPKELSP P R+ L  Y Y   RVGS L+ Y QGYN +  GG G+R DGRFSPVTVGR  
Sbjct: 181 VPKELSPGPTRSPLSGYNYGASRVGSILNSYTQGYNPSPTGGLGVRMDGRFSPVTVGRSN 240

Query: 244 LSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGG 303
            SP  PG+G+GLN + GL+ +YG   N SSNL YGR+          RY   +P+ + GG
Sbjct: 241 FSPFGPGFGMGLNFEQGLSPSYGGNSNLSSNLGYGRI-XXXXXXXXXRY--DNPIGFNGG 300

Query: 304 SGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLW------- 363
           +GGN S+L+S+ + LWGN   +  +N++    F G G  ++G SS   IG LW       
Sbjct: 301 NGGNSSVLNSTARTLWGNGNINHASNSTSSSNFMGPGTGNSGMSSFGSIGALWGSSANSV 360

Query: 364 ---GVGHGENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNN 423
              G G   N+GS  +N   N +FG G   VGYGR+  +NV+  S ++A   YD  + + 
Sbjct: 361 QGGGAGSTYNSGSLSYN---NGDFGVGLGGVGYGRNSGTNVAPVSSHAAS--YDGSYEDI 420

Query: 424 EEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
            E  S YG S+W+S   ELE S S GFGLGNAASD
Sbjct: 421 YENGSLYGDSAWRSSALELEGSGSFGFGLGNAASD 447

[Close]
BLAST of Carg25613 vs. TrEMBL
Match: tr|A0A061GHM1|A0A061GHM1_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.4e-137
Identity = 272/464 (58.62%), Postives = 322/464 (69.40%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+ GKLFIGGISWDT+EDRL++YFQ +G+VVE +IMRDR TGRARGFGFVVF+DP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           K+YFDQFGTITD VVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SP P+RNQLG Y +   RV S+L+GY QGYNT+SVGGYG R +GRFSPVT GR G 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
            P+SPGYG+GLN ++                         + GN NR+G  SP  YGGGS
Sbjct: 243 PPLSPGYGMGLNFESXXXXXXXXXXXXXXXXXXXXXXXXXFNGNSNRFG--SPFGYGGGS 302

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGN SIL+S+ +N+WGN   +  TN++      GSG  ++G SS   IG LW        
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALW-------- 362

Query: 364 GSSPFNGAGNVEFGNGGSVVGYG-------------------RSIRSNVSSASLYSAPN- 423
            SSP  G G      GG+   Y                        SNV+  S + A N 
Sbjct: 363 DSSPSLGQG------GGAASAYNXXXXXXXXXXXXXXXXXXXXXXNSNVAQLSTHGASNG 422

Query: 424 IYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
            YD  + N  E  SFYG S+W+S P++LE SSS GFGLG+A+SD
Sbjct: 423 GYDGAYANIYENGSFYGDSTWRSSPSDLERSSSFGFGLGDASSD 450

The following BLAST results are available for this feature:
BLAST of Carg25613 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966755.15.8e-25299.77heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima][more]
XP_022925356.19.9e-25299.77heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata][more]
XP_023542103.11.7e-25199.77heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022142553.14.4e-20783.26heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia] >XP_022142555.1 ... [more]
XP_022927354.12.5e-20281.72heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cucurbita moschata][more]
BLAST of Carg25613 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07810.27.1e-10370.30RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G47620.41.3e-9947.28RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.15.0e-8847.08RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G55550.33.6e-8647.84RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G14300.13.7e-5953.97RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg25613 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8W034|RNP1_ARATH6.7e-5853.97Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
sp|Q920Q6|MSI2H_MOUSE7.7e-4646.01RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1[more]
sp|Q9VVE5|MSIR6_DROME1.9e-4450.00RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
sp|Q9C652|RBP1_ARATH3.2e-4444.74RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1[more]
sp|O43347|MSI1H_HUMAN1.6e-4343.64RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1[more]
BLAST of Carg25613 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CK54|A0A1S3CK54_CUCME2.0e-20081.72heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350172... [more]
tr|A0A0A0LTE8|A0A0A0LTE8_CUCSA9.9e-20081.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1[more]
tr|B9HCV4|B9HCV4_POPTR4.4e-13960.31Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G015700v3 PE=... [more]
tr|A0A067KN54|A0A067KN54_JATCU2.8e-13860.66Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09513 PE=4 SV=1[more]
tr|A0A061GHM1|A0A061GHM1_THECC5.4e-13758.62RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030384 PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034131DAZAP1_RRM2
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25613-RACarg25613-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..79
e-value: 2.8E-22
score: 90.0
coord: 108..180
e-value: 4.1E-24
score: 96.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 109..167
e-value: 1.9E-16
score: 59.5
coord: 9..75
e-value: 1.1E-15
score: 57.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 107..184
score: 17.677
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..83
score: 17.728
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 103..182
e-value: 2.6E-25
score: 90.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 6..89
e-value: 1.8E-24
score: 87.8
NoneNo IPR availablePANTHERPTHR44291FAMILY NOT NAMEDcoord: 4..448
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 105..184
e-value: 8.40509E-47
score: 157.913
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 103..205
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 5..101