Lsi02G011240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G011240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-binding protein, putative
Location	chr02 : 13120542 .. 13125677 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAAGACAGCCAAGTCTTTCTTTTCTCTTTTCTTTTTCTCTCTCTCTCTCTACCTATACATATATATATATAATATATATAATTAATTGTTTATATTTATATGCAAATATTGCGCCCATTCCAGATGCAAATTCCTTTTCTTACACAAATATCTTCCTTCTTCTCTCTGTTTCATATATAGCCTTCATTCGTTTATTTGGTATTGCATATTTATCTAGAACAAAAACCAAAACAGTAACTGGAACAAGGAAAGAGATAGGAAAAAAGGAGGGCCTCTCGCCCTCTCTTCTTATTATGCCTTCTCTTAGATCTTAGATTCTAGAGTTCCCAACTGGGTCGTTTTCATTTGGGTAAGTTTTTTTTTTCCATCATCTCTTTTGTTCTCTGCAAATCATTTGTTTTCTCTATCTTTTTACTTGAATAGTTATCTGGGTTTTGAATCAAAACTCATTTCTTGGGAATTTTAGCCTTTTTCTTTGATGGGGGTCATTTCCCTTTTTCTGTCTTTAGCTTTTGTGGATTCCTTGTTTGTAGATCGATCGATTTTTTTTCTGATCGGTGGACGCTCCGATGCTCTGAGATCGAATCTGATTGCAATCATTTTGTATCTAACAATAAGAGCATTTTGTATTTTGATGATGATGATTTTTGTTTTTGATAACATCTGTTTAATTTAGCTCGCATTGTGGTGTTTCTCAAATGAATGCTTCTTTTTCAATCGTTGTTTGAATTCATATTGTTTTTGTATAGCTTTCTGTTTTTCTTCAGCCTGGATTGATCGACTTTGTGGCTTCTTCTTCTCAAGGCGATTGGCTTAGACTTTAAGATATGCGATTGCTGTGTGGTGTATGCATTCGTATTGTTGAATGATATTGATGGGATTAGTTGGAATGGATTTGTAGAGTGGGCATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGACCACCGGCCGTGCCCGTGGCTTTGGTTTCGTCGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTAATTGATGGAAGAACTGTAAGTCTTGTGTATTCATCTTGATTCTCATTGATTTTTCCACCTGTATTGGAAGTTTTAGATGTCTTTTATGGAATGTTCCAGTGTGTGTTCTGATTTGATTTTGTGAATGAATATGCTCGTGCCGCGATCAAGGTTTTCCCGATGTTCTTTGGTGTTCATCATGATTCAAACTTATTAGAATTCTTCAGCATTTGTATCCTAAATCTCTTTTACCTTGGGAAACTAATAATTTTCCTTTGGAGCATGAATGGGAAGATTTGGCTGTTCGCATTTTATTAGGACAAGTTCTGTTTCATCTGAAATGAAGTTCATGTTTCTGTGGAAGTATGATGCCAATGTATGTGCTTGGAATGTCAATTGTTTTTTAGAATCAATAGCTTAGATAACATGCTCTTCAAAAGGTAATATGCATGATGGCAGTTAAAGCATTTATTTGTGGAAGAAAAAGTTTAAGGCTACTTCTAGAATTAGTTTGATAATGAGCAATTATGGAAAATCTGTTGGGATCATTTAAGGGGGCTAAGAAGAACACAGTTAAGAATTTGCTTCTTGGCTTTATTAGAAAGTTTGAATATCTAAAGATGGTGGTAGAGAGATCCTAAAGCTATTGTAATTGTTAAATGAAGTGAGTGGTTGGCCTAATTTTTGTTGTTAGAAGCCACATTTTTTGTTTGGTTGTCTGCAAGCAGTTAGGATGTCTTACAATTAATTACATCTGTATCCTGTGAGCTGTGACTGGCTATATGCACAAACATATATATGTCAAATCAACACCGTGAGAGGACCTTGGTCCTTGGATAAATATGCAAATTTTCATATGTAGAAAGAAATCTATCATAATATTCCTTTGTAGTCCTCAATGTGAAACCATGATTTGTGAAAATTAGGAGGCTTGTTATCTTCTTGAGTTTGTCATGGACATTAGGTTTTATGTGTGATGGCCATCTCTTGTATTAAAAGGATACGTTTTGTTGCCTCCAGACTTGTATTGGTAATGAGAGTAAATTCTATCATTTTCATGTTTTGATGTTCATTTTCTTTCTTTCAGGTTGAAGCAAAGAAGGCTGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAACAATACTGGTATCCTTGGGTCACCTGGTCCTACTCGCACCAAGAAGATATTTGTTGGAGGATTGGCATCAACTGTTACAGAGAGCGACTTCAAAAAGTATTTTGATCAGTTTGGAACAATCGTAGATGTCGTTGTGATGTATGATCATAATACTCAGAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCAGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGGTGGATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCTCAGTTGGGGGATATGGATTGAGATCTGATGGTAGATTTAGTCCTGTTACAGTCGGTCGGAGTGGACTCTCTCCAATTAGTCCTGGTTATGGAATAGGGCTAAATCTTGATACAGGGTTGAACCCGAACTATGGAACAGGTCCCAATGTTAGCTCTAACCTCAGCTATGGACGGGTAATGAGCCCCTCATATGGTGGAAATTTAAATAGGTACGGTAGCCCAAACCCCATGGTATACGGTGGTGGTGGTGGAGGTAATGGTTCTATTTTAAGCTCATCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACAAACTCCTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCATTGAACAGTATCGGAGGGCTTTGGGGTGCTTCTGTGAGTCTAGGTCATGGGGAAAATGCTGGTTCTCCATTCAATACTGCTAATCTCGACTTTGGAAGTGGAGATGCCAGCTTTACATCAGGAACAACTGTAGGTTATGCTAGAAGCATTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATTTATGATGAGGTTCATGGGAATAATGATGAAGGAAACACATTTTATGGGCATTCCAGTTGGCAGTTGTTGCCAACAGAGCTTGAGGATTCTTCCTCAATTGGTTTTGGCCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTGGTTATACTGTGGGTTATGGTGTTTCTAATAGACAATCTAATAGAGGTGAGTCTTTCTACTTCAAAGAAAACTTTGAATATTTTCAAGTTTTTCTTTCTTCTACCGTTGTTACTTCTCTAGAAACTTTAGACATTCAAGCTTTTATCACTCTAATCATTATAAAAACTCAAGTTTTACAACCTTACTTGAACAAGATCTGATCTATAGGTTGTACCATTATGTCCTTTAGTTCTAAAGATTGCATAATACATGCCTTTTCTTGTTTATGCATTTTTAGGAGTTTTTCCTGGAATTTCTTACAATCTTCTTAGAGAAATCAGAATATATTAACCTTGGAACCAATGTAATGTACTCACGCACCTTAACAAGTTGAGAGAGCCTATTTAGTGAAAAAAAACTTTTACTTTTTAGAACAATACTTCAATGAAAATATGTTTTGTTCCGGATAACTGTTTTGAAAATTTGTAATTTCTTAGTTTACTTTATGATGGATGATCTGTTTTCTTGAGGATTTTTAATGTTACTTCCTCCAAAATATTAGACTTGTAAACAATGCTTTCTACCACATGATACCTTTAGATTTTTCTAGCTATCTGATCATAGTTTTCTAAAAGTTGTTTCAAAAAACAAAAGCAGAAAATCCATACAAAACAGTCCCTATTCCCTAAGCTTTTCAATGCAAGTTTGGAATGTTGATTAGTTTCTTCTCTGTTACACAAAAATAAGTTAGCATATCACTTACAGAAATAAGTGAAAAAGGATCCATATTTATTGCCTGCTAATTTGCGAATTAGATCCGTATGCATTTCGTTGTGAATTGCGATCTTAAAATAATTAAGATTTATGATCTTCAAAAGGACATTTGAACGTGTATGAGTTATTTGCTGAATATCTGTTGTTGTTAGGGAAGTGTCCAAATCTCACTTAAACAAACAAAGCTTTAAGCTTTAACAATATGAAAATAGGCTGATCTTTTTGTTTTGTGTTTAAATGTTTGATTCAGGAATTGCTGCTTAGGAAGAAGATGATACAACAGATGTCAAAAATTATAGTAGGTGATGCGTATTCGGTAAAGCAGGTGTACTGCAATTTTTCGTATAATTTCGTCATCGTGATACACTCCCATTTGATACTGTCAGAGCTAATTTGTTTTCTGTTTGACAAACTGTCCCATAAAGAAGCAGGTTCCAAAGGGTTTTCTCTTGGTCAGGATTGAGCTTGAAAATATAGGTCTTTCTTCTTTCTTCTACTTCTTTCTTTCTTTCTTTCTTGTAATTTGATTGATATGTATAATTGGATTGTGAGTAAGGTATATATGCAGAACTGTTGCATAATACGCTACTCCGAGAAACGATGTCACACGAACAAATCAACATCTTTCTTTCCTTTTTTTTTTTTTTCTCCTTTTCTTTTTTTTTTTTTTCTCCTTTTCTTTTTTTTTTTTTTCTCCTTTTCTTTTCGGGTTCGTTTTTCTGGGAAAGATGCTAGTACTCATCAGGTTTTCTTGTTGTTTGACCTTTTATTATTAGTCATTCTGGGTTTTTACTTCTCATCTGATTGTATGAAACTGAGGTTGATTTAGTGGTGTGATATTATCCAGCTTCCCAATTCTTCTTTGTTGTAAATTTAGCTCCTTTTTGAGCTAAAGTTTTATAAGTTCATATAAACACTCTCACTTGCAATTGAAAACGTCCTTTTCAGCACCGATCCAAGGCGATCGTGCCGTTTCTTATAAGTTGTAAGTTTGAATCATTTCCTTATTTATTGTATGATGTGCTAGAAGAAAATCTTTTTCCA

mRNA sequence

CGCAAGACAGCCAAGTCTTTCTTTTCTCTTTTCTTTTTCTCTCTCTCTCTCTACCTATACATATATATATATAATATATATAATTAATTGTTTATATTTATATGCAAATATTGCGCCCATTCCAGATGCAAATTCCTTTTCTTACACAAATATCTTCCTTCTTCTCTCTGTTTCATATATAGCCTTCATTCGTTTATTTGGTATTGCATATTTATCTAGAACAAAAACCAAAACAGTAACTGGAACAAGGAAAGAGATAGGAAAAAAGGAGGGCCTCTCGCCCTCTCTTCTTATTATGCCTTCTCTTAGATCTTAGATTCTAGAGTTCCCAACTGGGTCGTTTTCATTTGGCTTTCTGTTTTTCTTCAGCCTGGATTGATCGACTTTGTGGCTTCTTCTTCTCAAGGCGATTGGCTTAGACTTTAAGATATGCGATTGCTGTGTGGTGTATGCATTCGTATTGTTGAATGATATTGATGGGATTAGTTGGAATGGATTTGTAGAGTGGGCATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGACCACCGGCCGTGCCCGTGGCTTTGGTTTCGTCGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTAATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAACAATACTGGTATCCTTGGGTCACCTGGTCCTACTCGCACCAAGAAGATATTTGTTGGAGGATTGGCATCAACTGTTACAGAGAGCGACTTCAAAAAGTATTTTGATCAGTTTGGAACAATCGTAGATGTCGTTGTGATGTATGATCATAATACTCAGAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCAGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGGTGGATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCTCAGTTGGGGGATATGGATTGAGATCTGATGGTAGATTTAGTCCTGTTACAGTCGGTCGGAGTGGACTCTCTCCAATTAGTCCTGGTTATGGAATAGGGCTAAATCTTGATACAGGGTTGAACCCGAACTATGGAACAGGTCCCAATGTTAGCTCTAACCTCAGCTATGGACGGGTAATGAGCCCCTCATATGGTGGAAATTTAAATAGGTACGGTAGCCCAAACCCCATGGTATACGGTGGTGGTGGTGGAGGTAATGGTTCTATTTTAAGCTCATCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACAAACTCCTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCATTGAACAGTATCGGAGGGCTTTGGGGTGCTTCTGTGAGTCTAGGTCATGGGGAAAATGCTGGTTCTCCATTCAATACTGCTAATCTCGACTTTGGAAGTGGAGATGCCAGCTTTACATCAGGAACAACTGTAGGTTATGCTAGAAGCATTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATTTATGATGAGGTTCATGGGAATAATGATGAAGGAAACACATTTTATGGGCATTCCAGTTGGCAGTTGTTGCCAACAGAGCTTGAGGATTCTTCCTCAATTGGTTTTGGCCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTGGTTATACTGTGGGTTATGGTGTTTCTAATAGACAATCTAATAGAGGTGAGTCTTTCTACTTCAAAGAAAACTTTGAATATTTTCAAGAATTGCTGCTTAGGAAGAAGATGATACAACAGATGTCAAAAATTATAGTAGGTGATGCGTATTCGGTAAAGCAGGTGTACTGCAATTTTTCGTATAATTTCGTCATCGTGATACACTCCCATTTGATACTGTCAGAGCTAATTTGTTTTCTGTTTGACAAACTGTCCCATAAAGAAGCAGGTTCCAAAGGGTTTTCTCTTGGTCAGGATTGAGCTTGAAAATATAGGTCTTTCTTCTTTCTTCTACTTCTTTCTTTCTTTCTTTCTTGTAATTTGATTGATATGTATAATTGGATTGTGAGTAAGGTATATATGCAGAACTGTTGCATAATACGCTACTCCGAGAAACGATGTCACACGAACAAATCAACATCTTTCTTTCCTTTTTTTTTTTTTTCTCCTTTTCTTTTTTTTTTTTTTCTCCTTTTCTTTTTTTTTTTTTTCTCCTTTTCTTTTCGGGTTCGTTTTTCTGGGAAAGATGCTAGTACTCATCAGGTTTTCTTGTTGTTTGACCTTTTATTATTAGTCATTCTGGGTTTTTACTTCTCATCTGATTGTATGAAACTGAGGTTGATTTAGTGGTGTGATATTATCCAGCTTCCCAATTCTTCTTTGTTGTAAATTTAGCTCCTTTTTGAGCTAAAGTTTTATAAGTTCATATAAACACTCTCACTTGCAATTGAAAACGTCCTTTTCAGCACCGATCCAAGGCGATCGTGCCGTTTCTTATAAGTTGTAAGTTTGAATCATTTCCTTATTTATTGTATGATGTGCTAGAAGAAAATCTTTTTCCA

Coding sequence (CDS)

ATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGACCACCGGCCGTGCCCGTGGCTTTGGTTTCGTCGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTAATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAACAATACTGGTATCCTTGGGTCACCTGGTCCTACTCGCACCAAGAAGATATTTGTTGGAGGATTGGCATCAACTGTTACAGAGAGCGACTTCAAAAAGTATTTTGATCAGTTTGGAACAATCGTAGATGTCGTTGTGATGTATGATCATAATACTCAGAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCAGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGGTGGATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCTCAGTTGGGGGATATGGATTGAGATCTGATGGTAGATTTAGTCCTGTTACAGTCGGTCGGAGTGGACTCTCTCCAATTAGTCCTGGTTATGGAATAGGGCTAAATCTTGATACAGGGTTGAACCCGAACTATGGAACAGGTCCCAATGTTAGCTCTAACCTCAGCTATGGACGGGTAATGAGCCCCTCATATGGTGGAAATTTAAATAGGTACGGTAGCCCAAACCCCATGGTATACGGTGGTGGTGGTGGAGGTAATGGTTCTATTTTAAGCTCATCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACAAACTCCTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCATTGAACAGTATCGGAGGGCTTTGGGGTGCTTCTGTGAGTCTAGGTCATGGGGAAAATGCTGGTTCTCCATTCAATACTGCTAATCTCGACTTTGGAAGTGGAGATGCCAGCTTTACATCAGGAACAACTGTAGGTTATGCTAGAAGCATTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATTTATGATGAGGTTCATGGGAATAATGATGAAGGAAACACATTTTATGGGCATTCCAGTTGGCAGTTGTTGCCAACAGAGCTTGAGGATTCTTCCTCAATTGGTTTTGGCCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTGGTTATACTGTGGGTTATGGTGTTTCTAATAGACAATCTAATAGAGGTGAGTCTTTCTACTTCAAAGAAAACTTTGAATATTTTCAAGAATTGCTGCTTAGGAAGAAGATGATACAACAGATGTCAAAAATTATAGTAGGTGATGCGTATTCGGTAAAGCAGGTGTACTGCAATTTTTCGTATAATTTCGTCATCGTGATACACTCCCATTTGATACTGTCAGAGCTAATTTGTTTTCTGTTTGACAAACTGTCCCATAAAGAAGCAGGTTCCAAAGGGTTTTCTCTTGGTCAGGATTGA

Protein sequence

MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGGGGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGHGENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEGNTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGESFYFKENFEYFQELLLRKKMIQQMSKIIVGDAYSVKQVYCNFSYNFVIVIHSHLILSELICFLFDKLSHKEAGSKGFSLGQD

Homology

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BLAST of Lsi02G011240 vs. Swiss-Prot
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.0e-60
Identity = 168/446 (37.67%), Postives = 236/446 (52.91%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLF+GGISW+TDED+LRE+F ++GEV + ++MRD+ TGR RGFGFV+F+DP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 121
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 122 SDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +F++YF+ +G + DV +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 182 RAVPKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGR 241
           RA+PK+++P       GG   S G  GS   GY QGY        G     RF       
Sbjct: 184 RALPKDANP-------GGGGRSMGGGGS--GGY-QGYGGNESSYDGRMDSNRFLQHQSVG 243

Query: 242 SGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYG 301
           +GL    P YG      +G    YG G N +   +YG      Y G+   YG+     YG
Sbjct: 244 NGL----PSYG-----SSGYGAGYGNGSNGAGYGAYG-----GYTGSAGGYGAGATAGYG 303

Query: 302 G---GGGGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGA 361
                G G GS    + +N W    +S   N  +     GSG  H+G        G+ GA
Sbjct: 304 ATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGY-----GSGAAHSGY-------GVPGA 363

Query: 362 SVSLGHGENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVH 421
           +          SP   +N  +G G     SG+  GY         + + Y          
Sbjct: 364 A------PPTQSPSGYSNQGYGYGG---YSGSDSGY--------GNQAAYGVVGGRPSGG 396

Query: 422 GNNDEGN-----TFYGHSSWQLLPTE 436
           G+N+ G+       YG  SW+  P++
Sbjct: 424 GSNNPGSGGYMGGGYGDGSWRSDPSQ 396

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BLAST of Lsi02G011240 vs. Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.1e-49
Identity = 126/315 (40.00%), Postives = 169/315 (53.65%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD TT R+RGFGFV FADP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLEKH-VIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + + H  +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSANTVVEDV 138

Query: 122 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K+YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRNQLGGYPYS-------FGRVG--SYLNGYNQGYNPTSVGGYGLRSDG-- 241
           PKE   P   R +  G PY+        G +G  +++  Y +GY P     YG +  G  
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPGFP 258

Query: 242 --RFSPVTVGR------SGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPS 296
              + PV          SG +P  PG   G N    +   YG     S   +Y    SP 
Sbjct: 259 AAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQ 318

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BLAST of Lsi02G011240 vs. Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-46
Identity = 135/351 (38.46%), Postives = 181/351 (51.57%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD TT R+RGFGFV FADP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLEKH-VIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + + H  +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSANTVVEDV 138

Query: 122 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K+YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRNQLGGYPYS-------FGRVG--SYLNGYNQGYNPTSVGGYGLRSDGRF 241
           PKE   P   R +  G PY+        G +G  +++  Y +GY P     YG +  G F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 242 SPVTVGRSGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGS 301
                G    + ++   G  LN       +Y   PN      +G   SP+          
Sbjct: 259 PAAAYGPVAAAAVAAARGSVLN-------SYSAQPN------FGAPASPA---------G 318

Query: 302 PNPMVYGGGGGGNGSILSSSVQNLWGNVGNSAGTNS--SHLRTFPGSGGVH 340
            NP   GG  G N       V +L+G     +G  +  S     PGSG  H
Sbjct: 319 SNPARPGGFPGANS---PGPVADLYGPASQDSGVGNYISAASPQPGSGFGH 330

[Close]

BLAST of Lsi02G011240 vs. Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 180.3 bits (456), Expect = 6.0e-44
Identity = 91/183 (49.73%), Postives = 124/183 (67.76%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           DPGK+FIGG+SW T  + LR+YF  +G++ E M+M+D TT R+RGFGFV F+DP    +V
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + +  H +DG+ V+ K A PR       R +  ++     TRTKKIFVGGL++  T  D 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPR-------RAHPKMV-----TRTKKIFVGGLSAPTTLEDV 146

Query: 122 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K YF+QFG I D ++M+D  T R RGFGF+T++SE+ V+KV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 197

Query: 182 PKE 184
           PKE
Sbjct: 207 PKE 197

[Close]

BLAST of Lsi02G011240 vs. Swiss-Prot
Match: RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-43
Identity = 103/240 (42.92%), Postives = 147/240 (61.25%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D  KLF+GGI+ +T E+ L++YF  +G V+E ++ +++ TG+ RGFGFV FA+     + 
Sbjct: 4   DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDD-----------QNILSRNNTGI--LGSPG-PTRTKKIF 121
           + + H I G+ V+ +KA+ + +           +  + + N G+  + S G  +RTKKIF
Sbjct: 64  LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123

Query: 122 VGGLASTVTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFH 181
           VGGL+S  TE +FK YF++FG   DVVVM+D  T RPRGFGF+TY+SE+SVE V+   FH
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183

Query: 182 ELNGKMVEVKRAVPKESSPVPNRNQLGGYP-YSFGRVGSYL---NGYNQGYN-PTSVGGY 223
           EL+ K VEVKRA+PKE     N N +   P YS  +   Y+   NGY      P  V GY
Sbjct: 184 ELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQNGYGMVLQFPPPVFGY 243

[Close]

BLAST of Lsi02G011240 vs. TrEMBL
Match: A0A0A0LTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181500 PE=4 SV=1)

HSP 1 Score: 898.3 bits (2320), Expect = 4.8e-258
Identity = 452/475 (95.16%), Postives = 462/475 (97.26%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSPVPNRNQL GYP++FGRVGSYLNGYNQGYNPT+VGGYGLRSDGRFSPVTVGR GL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
           SPISPGYG+GLNL+TGLNPNYGTGPNVSSNLSYGRVMSPSY GNLNRYGSPNPMVY  GG
Sbjct: 241 SPISPGYGMGLNLETGLNPNYGTGPNVSSNLSYGRVMSPSYSGNLNRYGSPNPMVY-SGG 300

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGNGSILSSSVQNLWGNV  SAGTNSSHLRTFPGSGGVHTGT+SLN+IGGLWGAS SLGH
Sbjct: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GENAGS FNT NLDFG+GDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 476
           NTFYGHSSWQ LPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG
Sbjct: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 474

[Close]

BLAST of Lsi02G011240 vs. TrEMBL
Match: A0A061GIB9_THECC (RNA-binding family protein isoform 5 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 1.2e-168
Identity = 314/478 (65.69%), Postives = 375/478 (78.45%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLREYFQ+FG+VVE +IMRDR TGRARGFGFVVFADP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K+YFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSP P+RNQLGGY +   RV S+LNGY QGYN +SVGGYG R +GRFSPVT GRSG 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
            P+SPGYG+GLN ++ L+P+YG   N+ SNLSYGR +  S+ GN NR+GS  P  YGGG 
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGS--PFGYGGGS 302

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGN SIL+S+ +N+WGN   +  TNS+      GSG  ++G +S  SIG LW +S SLG 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPN-IYDEVHGNNDE 420
           G  A S +N  NL +GSGD    SG  +GY R+  +NV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASAYNGGNLRYGSGDFGVGSG-GIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 421 GNTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGES 478
             +FYG S+W+  P++LE SSS GFGLG+A+SDV++ N+A Y  GY V+NRQ+NRG S
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMTNNSADYIGGYSVTNRQANRGFS 475

[Close]

BLAST of Lsi02G011240 vs. TrEMBL
Match: A0A061GHM1_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 2.1e-168
Identity = 313/476 (65.76%), Postives = 374/476 (78.57%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLREYFQ+FG+VVE +IMRDR TGRARGFGFVVFADP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K+YFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSP P+RNQLGGY +   RV S+LNGY QGYN +SVGGYG R +GRFSPVT GRSG 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
            P+SPGYG+GLN ++ L+P+YG   N+ SNLSYGR +  S+ GN NR+GS  P  YGGG 
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGS--PFGYGGGS 302

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGN SIL+S+ +N+WGN   +  TNS+      GSG  ++G +S  SIG LW +S SLG 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPN-IYDEVHGNNDE 420
           G  A S +N  NL +GSGD    SG  +GY R+  +NV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASAYNGGNLRYGSGDFGVGSG-GIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 421 GNTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 476
             +FYG S+W+  P++LE SSS GFGLG+A+SDV++ N+A Y  GY V+NRQ+NRG
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMTNNSADYIGGYSVTNRQANRG 473

[Close]

BLAST of Lsi02G011240 vs. TrEMBL
Match: A0A061GGB0_THECC (RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 2.1e-168
Identity = 313/476 (65.76%), Postives = 374/476 (78.57%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLREYFQ+FG+VVE +IMRDR TGRARGFGFVVFADP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K+YFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSP P+RNQLGGY +   RV S+LNGY QGYN +SVGGYG R +GRFSPVT GRSG 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
            P+SPGYG+GLN ++ L+P+YG   N+ SNLSYGR +  S+ GN NR+GS  P  YGGG 
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGS--PFGYGGGS 302

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGN SIL+S+ +N+WGN   +  TNS+      GSG  ++G +S  SIG LW +S SLG 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPN-IYDEVHGNNDE 420
           G  A S +N  NL +GSGD    SG  +GY R+  +NV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASAYNGGNLRYGSGDFGVGSG-GIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 421 GNTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 476
             +FYG S+W+  P++LE SSS GFGLG+A+SDV++ N+A Y  GY V+NRQ+NRG
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMTNNSADYIGGYSVTNRQANRG 473

[Close]

BLAST of Lsi02G011240 vs. TrEMBL
Match: A0A067GII0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011518mg PE=4 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 1.9e-166
Identity = 308/487 (63.24%), Postives = 375/487 (77.00%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLR+YFQ+FGEV+E +IM+DR TGRARGFGF+VFADP VA R
Sbjct: 3   MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV++KH+IDGRTVEAKKAVPRDDQNI +RNN+ I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFG I DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL KTFHELNGKMVEVKRAV
Sbjct: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKE SP P+RNQLG + Y   RV S+LNGY Q YNP+SVGGYGLR DGR+ PVT+GRSG 
Sbjct: 183 PKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGF 242

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
           + I PGYG+GLN +  L+P++G G N+S NLSYGR ++PS+GGN NRY SP    YG G 
Sbjct: 243 TTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSNRYSSPGS--YGAGN 302

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGN S+LSS  +NLWGN   +   N+++   F GSGG  +G  SL S+G LW +S   GH
Sbjct: 303 GGNSSVLSSPSRNLWGNGNLNYALNTANSNAFLGSGGGTSGMGSLGSLGALWDSSPDPGH 362

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           G  AG+ +++ NL +G+GD    SG  VGY R+  T+V   S  S    YD  +G+  E 
Sbjct: 363 GGGAGAGYSSGNLSYGNGDLVVGSG-AVGYGRNSMTSVPPVS--STKGSYDVAYGDIYES 422

Query: 421 NTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGESFYF 480
            +FYG S+W+   +ELE S S GFG+G  ASDV+++N+AGY  GY V++RQ+NRG+ F+ 
Sbjct: 423 GSFYGDSTWRPSSSELEGSGSFGFGVGPTASDVMTKNSAGYVGGYSVTDRQANRGKIFFS 482

Query: 481 KENFEYF 488
              + +F
Sbjct: 483 IILYSFF 484

[Close]

BLAST of Lsi02G011240 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 459.9 bits (1182), Expect = 2.2e-129
Identity = 282/498 (56.63%), Postives = 335/498 (67.27%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLFIGGISWDT+E+RL+EYF SFGEV+E +I++DRTTGRARGFGFVVFADP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTG-ILGSPG-PTRTKKIFVGGLASTVTESD 121
           + EKH IDGR VEAKKAVPRDDQN+++R+N+  I GSPG P RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 122 FKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 181
           FK YF+QFGT  DVVVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 182 VPKESSPVPNRNQLG-GYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRS 241
           VPKE SP P+R+ LG GY Y   RV + LNGY QG+NP +VGGYGLR DGRFSPV  GRS
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 242 GLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGG 301
           G +  S GYG+ +N D GL   +  G N + N+ YGR MSP Y GN NR+G P     GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 302 GGGGNGSILSSSVQNLWGNVG----NSAGTNSSHLRTFPG--SGGVHTGTNSLNSIGGLW 361
            GGGN S  SS  +NLWGN G    N+  TNS+   T+ G  S G +T +    + G  W
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNS-NTYMGGSSSGNNTLSGPFGNSGVNW 363

Query: 362 GASVSLGHGENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTN----VSSASLYSAPN 421
           GA    G G NA S  N      G+G++ F  GT    AR+ G N     SS S  SA N
Sbjct: 364 GAP---GGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATN 423

Query: 422 I--YD-----EVHGNNDEGNTFYGHSSWQLLPTELEDSSSIGFGLGNA--ASDVISRNNA 477
              YD     E +GN       Y   +W+    E E  +   +G+G    +SDV +R+++
Sbjct: 424 NTGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSS 483

[Close]

BLAST of Lsi02G011240 vs. TAIR10
Match: AT5G47620.4 (AT5G47620.4 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 374.0 bits (959), Expect = 1.6e-103
Identity = 237/502 (47.21%), Postives = 297/502 (59.16%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+  KLFIGGISW+T EDRLR+YF SFGEV+E +IM+DR TGRARGFGFVVFADP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 61  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNILSRNNTGILGSP 120
           VVL KH+IDG+                       VEAKKAVPRDD  + +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 121 GPTRTKKIFVGGLASTVTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESV 180
           GP+ +KKIFVGGLAS+VTE++FKKYF QFG I DVVVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 181 EKVLYKTFHELNGKMVEVKRAVPKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTS 240
           +KVL KTFHELNGKMVEVK AVPK+ +    RNQ+    +   R+ S LN Y QG++P+ 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 241 VGGYGLRSDGRFSPVTVGRSGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMS 300
           + GYG++ + R+SP    R G SP   GYGI LN +     NYG+G    S+  +GR  S
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSG----SSGGFGRPFS 302

Query: 301 PSYGGNLNRYGSPNPMVYGGGGGGNGSILSSSVQN-LWGNVGNSAGTNSSHLR-TFPGSG 360
           P Y  +L R+GS   M  GG   GNGS+L+++ +N LWGN G    +NS   R +F G+ 
Sbjct: 303 PGYAASLGRFGS--QMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNS 362

Query: 361 GVHTGTNSLNSIGGLWGA---SVSLGHGENAGSPFNTANLDFGSGDASFTSGTTVGYARS 420
           G+    +SL SIG  WG    + S  HGE  G                      VG    
Sbjct: 363 GM----SSLGSIGDNWGTVARARSSYHGERGG----------------------VGLEAM 422

Query: 421 IGTNVSSASLYSAPNIYDEVHGNNDEGNTFYGHSSWQLLPTELEDSSSIGFGLGNAASDV 476
            G +V   S  S  +I         E ++ Y  S W  LP + E+       LG    D 
Sbjct: 423 RGVHVGGYS--SGSSIL--------EADSLYSDSMWLSLPAKAEEG------LGMGPLDF 450

[Close]

BLAST of Lsi02G011240 vs. TAIR10
Match: AT4G26650.1 (AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 361.7 bits (927), Expect = 8.2e-100
Identity = 239/502 (47.61%), Postives = 302/502 (60.16%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLFIGGISWDTDE+RL+EYF  +G++VE +IMRDRTTGRARGFGF+VFADP VA RV
Sbjct: 13  DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGIL-------GSPGPTRTKKIFVGGLAST 121
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + +        G+ G  RTKKIFVGGL S+
Sbjct: 73  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132

Query: 122 VTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMV 181
           +TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT++SEESV+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192

Query: 182 EVKRAVPKE-SSPVPNRNQLGGYPYSFGRV------GSYLNGYNQGYNPTSVGGYGLRSD 241
           EVKRAVPKE SS  PNR+ L GY  ++G V       SY N +  GYN  ++G     S 
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLG-----SA 252

Query: 242 GRFSPVTVGRSGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSY--GGNL 301
           GRFSP+  GR+  S     +G+GLN +  LN N+       + L Y R+    Y    + 
Sbjct: 253 GRFSPIGSGRNAFS----SFGLGLNQELNLNSNFD-----GNTLGYSRIPGNQYFNSASP 312

Query: 302 NRYGSPNPMVYGGGGGGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPG-SGGVHTGTNS 361
           NRY SP       G     S  + S ++LWGN  +S+G         PG + GV  G N 
Sbjct: 313 NRYNSPI------GYNRGDSAYNPSNRDLWGNRSDSSG---------PGWNLGVSVGNNR 372

Query: 362 LNSIGGLWGASVSL----GHGENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSS 421
                G WG S  +    G+G + G+    + L F        +G T G+  SIG     
Sbjct: 373 -----GNWGLSSVVSDNNGYGRSYGAGSGLSGLSF--------AGNTNGFDGSIG----- 432

Query: 422 ASLYSAPNIYDEVHGNNDEGNTFYGHSSW-QLLP-----TELED-SSSIGFGLGNAASDV 476
             LY               G++ Y  S+W Q +P      EL+  S S GFG+ N  SD 
Sbjct: 433 -ELY--------------RGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDP 452

[Close]

BLAST of Lsi02G011240 vs. TAIR10
Match: AT5G55550.3 (AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 335.9 bits (860), Expect = 4.8e-92
Identity = 238/497 (47.89%), Postives = 304/497 (61.17%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLFIGGISWDTDE+RLR+YF ++G+VVE +IMRDR TGRARGFGF+VFADP V+ RV
Sbjct: 4   DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGI-LGSP---GPTRTKKIFVGGLASTVTE 121
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + I L SP   G  RTKKIFVGGL S++TE
Sbjct: 64  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123

Query: 122 SDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT++S+++V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183

Query: 182 RAVPKESSPVPN-RNQL-GGYPYSFGR----VGSYLNGYNQG---YNPTSVGGYGLRSDG 241
           RAVPKE SPV N R+ L  G  Y  G       SY N +  G   YN  S+G  G     
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN--SLGPVG----R 243

Query: 242 RFSPVTVGRSGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSY--GGNLN 301
           RFSPV +G SG + +S  +G+GLN D  LN N  +    SS   Y R+ S  Y  G + N
Sbjct: 244 RFSPV-IG-SGRNAVS-AFGLGLNHDLSLNLN-PSCDGTSSTFGYNRIPSNPYFNGASPN 303

Query: 302 RYGSPNPMVYGGGGGGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLN 361
           RY SP       G     S  +S+ ++LWGN  ++AG         PG            
Sbjct: 304 RYTSPI------GHNRTESPYNSNNRDLWGNRTDTAG---------PG------------ 363

Query: 362 SIGGLWGASVSLGHGENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSA 421
                W  +VS  +G N G        ++G   +S  S    G+ R+ GT   S+ L S+
Sbjct: 364 -----WNLNVS--NGNNRG--------NWGLPSSSAVSNDNNGFGRNYGT---SSGLSSS 423

Query: 422 P-NIYDEVHGNNDEGNTFYGHSSW--QLLPT----ELED-SSSIGFGLGNAASDVISRNN 476
           P N ++   G    G + Y  S+W  Q LP+    EL++ S + G+ + N  SD  + + 
Sbjct: 424 PFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDP 445

[Close]

BLAST of Lsi02G011240 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 233.4 bits (594), Expect = 3.4e-61
Identity = 168/446 (37.67%), Postives = 236/446 (52.91%), Query Frame = 1


Query: 2   DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 61
           D GKLF+GGISW+TDED+LRE+F ++GEV + ++MRD+ TGR RGFGFV+F+DP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 121
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 122 SDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +F++YF+ +G + DV +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 182 RAVPKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGR 241
           RA+PK+++P       GG   S G  GS   GY QGY        G     RF       
Sbjct: 184 RALPKDANP-------GGGGRSMGGGGS--GGY-QGYGGNESSYDGRMDSNRFLQHQSVG 243

Query: 242 SGLSPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYG 301
           +GL    P YG      +G    YG G N +   +YG      Y G+   YG+     YG
Sbjct: 244 NGL----PSYG-----SSGYGAGYGNGSNGAGYGAYG-----GYTGSAGGYGAGATAGYG 303

Query: 302 G---GGGGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGA 361
                G G GS    + +N W    +S   N  +     GSG  H+G        G+ GA
Sbjct: 304 ATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGY-----GSGAAHSGY-------GVPGA 363

Query: 362 SVSLGHGENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVH 421
           +          SP   +N  +G G     SG+  GY         + + Y          
Sbjct: 364 A------PPTQSPSGYSNQGYGYGG---YSGSDSGY--------GNQAAYGVVGGRPSGG 396

Query: 422 GNNDEGN-----TFYGHSSWQLLPTE 436
           G+N+ G+       YG  SW+  P++
Sbjct: 424 GSNNPGSGGYMGGGYGDGSWRSDPSQ 396

[Close]

BLAST of Lsi02G011240 vs. NCBI nr
Match: gi|659127261|ref|XP_008463611.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo])

HSP 1 Score: 911.4 bits (2354), Expect = 7.9e-262
Identity = 458/475 (96.42%), Postives = 465/475 (97.89%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDRTTGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSPVPNRNQL GYPY+FGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGR GL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
           SPISPGYG+G+NLDTGLNPNYGTGP  SSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG
Sbjct: 241 SPISPGYGMGINLDTGLNPNYGTGP--SSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGNGSILSSSVQNLWGNV NSAGTNSSHLRTFPGSGGVHTGTNSLN+IGGLWG S SLGH
Sbjct: 301 GGNGSILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GEN GSPFNTANLDFG+GDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENGGSPFNTANLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 476
           NTFYGHSSWQ LPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG
Sbjct: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 473

[Close]

BLAST of Lsi02G011240 vs. NCBI nr
Match: gi|449443534|ref|XP_004139532.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus])

HSP 1 Score: 898.3 bits (2320), Expect = 6.9e-258
Identity = 452/475 (95.16%), Postives = 462/475 (97.26%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSPVPNRNQL GYP++FGRVGSYLNGYNQGYNPT+VGGYGLRSDGRFSPVTVGR GL
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGGYGLRSDGRFSPVTVGRGGL 240

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
           SPISPGYG+GLNL+TGLNPNYGTGPNVSSNLSYGRVMSPSY GNLNRYGSPNPMVY  GG
Sbjct: 241 SPISPGYGMGLNLETGLNPNYGTGPNVSSNLSYGRVMSPSYSGNLNRYGSPNPMVY-SGG 300

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGNGSILSSSVQNLWGNV  SAGTNSSHLRTFPGSGGVHTGT+SLN+IGGLWGAS SLGH
Sbjct: 301 GGNGSILSSSVQNLWGNVSTSAGTNSSHLRTFPGSGGVHTGTSSLNNIGGLWGASASLGH 360

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           GENAGS FNT NLDFG+GDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENAGSSFNTVNLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 421 NTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 476
           NTFYGHSSWQ LPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG
Sbjct: 421 NTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 474

[Close]

BLAST of Lsi02G011240 vs. NCBI nr
Match: gi|1009166919|ref|XP_015901845.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 604.0 bits (1556), Expect = 2.7e-169
Identity = 315/475 (66.32%), Postives = 372/475 (78.32%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+PGKLFIGGISWDT+EDRLREYFQSFGEVVE +IM+DR TGRARGFGF+VFADP VA +
Sbjct: 3   MEPGKLFIGGISWDTNEDRLREYFQSFGEVVEAVIMKDRATGRARGFGFIVFADPYVAEK 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV EKHVIDGRTVEAKKAVPRDDQN+L+RNN+ ILGSP P RTKKIFVGGLASTVTESDF
Sbjct: 63  VVTEKHVIDGRTVEAKKAVPRDDQNMLNRNNSNILGSPSPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K+YFDQFGTI DVVVMYDHNTQRPRGFGFITY+SE++V+KVLY+TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLYRTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKE SP PNR QLGGY Y  GRV S+LNG++QGYN +SVGGY      RFSPV+VGRSGL
Sbjct: 183 PKELSPGPNRGQLGGYSYGVGRVTSFLNGFSQGYNSSSVGGYS-----RFSPVSVGRSGL 242

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
           S  +PGYG GLN + GL+P+YG   N SSNL+YGR +SPSY GN  +YGS     YGGG 
Sbjct: 243 SSFNPGYGTGLNFEPGLSPSYGVNANQSSNLNYGRGLSPSYNGNSIKYGS--AAGYGGGN 302

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGN SIL++  +NLWGN   +   NS++  +F GSG  +TG  S ++IG LWG+S S G 
Sbjct: 303 GGNSSILNTVGRNLWGNGNLNYAANSTNTSSFMGSGSGNTGMGSFSNIGALWGSSPSSGQ 362

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420
           G   GS F++ +L +GSGD SF S   +GY R+ G  V+    Y+  + YD    +  EG
Sbjct: 363 GGGTGSTFSSGSLTYGSGDVSFGS-AGLGYGRNSGAGVTPGLSYATNDGYDGARTDIFEG 422

Query: 421 NTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 476
            +FYG S+W+   +ELE S S G+GLGNAASDV+ +N+AGY  GYGV+NRQS RG
Sbjct: 423 GSFYGDSTWRSSQSELEGSVSFGYGLGNAASDVMGKNSAGYVGGYGVANRQSTRG 469

[Close]

BLAST of Lsi02G011240 vs. NCBI nr
Match: gi|590626883|ref|XP_007026295.1| (RNA-binding family protein isoform 5 [Theobroma cacao])

HSP 1 Score: 601.3 bits (1549), Expect = 1.7e-168
Identity = 314/478 (65.69%), Postives = 375/478 (78.45%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLREYFQ+FG+VVE +IMRDR TGRARGFGFVVFADP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K+YFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSP P+RNQLGGY +   RV S+LNGY QGYN +SVGGYG R +GRFSPVT GRSG 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
            P+SPGYG+GLN ++ L+P+YG   N+ SNLSYGR +  S+ GN NR+GS  P  YGGG 
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGS--PFGYGGGS 302

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGN SIL+S+ +N+WGN   +  TNS+      GSG  ++G +S  SIG LW +S SLG 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPN-IYDEVHGNNDE 420
           G  A S +N  NL +GSGD    SG  +GY R+  +NV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASAYNGGNLRYGSGDFGVGSG-GIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 421 GNTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRGES 478
             +FYG S+W+  P++LE SSS GFGLG+A+SDV++ N+A Y  GY V+NRQ+NRG S
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMTNNSADYIGGYSVTNRQANRGFS 475

[Close]

BLAST of Lsi02G011240 vs. NCBI nr
Match: gi|590626877|ref|XP_007026293.1| (RNA-binding family protein isoform 3 [Theobroma cacao])

HSP 1 Score: 600.5 bits (1547), Expect = 3.0e-168
Identity = 313/476 (65.76%), Postives = 374/476 (78.57%), Query Frame = 1


Query: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60
           M+ GKLFIGGISWDT+EDRLREYFQ+FG+VVE +IMRDR TGRARGFGFVVFADP +A R
Sbjct: 3   MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFGFVVFADPAIAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKH+IDGRTVEAKKAVPRDDQNIL+++N  I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 63  VVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDF 122

Query: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K+YFDQFGTI DVVVMYDHNTQRPRGFGFITY+SEE+V+KVL +TFHELNGKMVEVKRAV
Sbjct: 123 KRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAV 182

Query: 181 PKESSPVPNRNQLGGYPYSFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRSGL 240
           PKESSP P+RNQLGGY +   RV S+LNGY QGYN +SVGGYG R +GRFSPVT GRSG 
Sbjct: 183 PKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGF 242

Query: 241 SPISPGYGIGLNLDTGLNPNYGTGPNVSSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300
            P+SPGYG+GLN ++ L+P+YG   N+ SNLSYGR +  S+ GN NR+GS  P  YGGG 
Sbjct: 243 PPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGS--PFGYGGGS 302

Query: 301 GGNGSILSSSVQNLWGNVGNSAGTNSSHLRTFPGSGGVHTGTNSLNSIGGLWGASVSLGH 360
           GGN SIL+S+ +N+WGN   +  TNS+      GSG  ++G +S  SIG LW +S SLG 
Sbjct: 303 GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQ 362

Query: 361 GENAGSPFNTANLDFGSGDASFTSGTTVGYARSIGTNVSSASLYSAPN-IYDEVHGNNDE 420
           G  A S +N  NL +GSGD    SG  +GY R+  +NV+  S + A N  YD  + N  E
Sbjct: 363 GGGAASAYNGGNLRYGSGDFGVGSG-GIGYGRN--SNVAQLSTHGASNGGYDGAYANIYE 422

Query: 421 GNTFYGHSSWQLLPTELEDSSSIGFGLGNAASDVISRNNAGYTVGYGVSNRQSNRG 476
             +FYG S+W+  P++LE SSS GFGLG+A+SDV++ N+A Y  GY V+NRQ+NRG
Sbjct: 423 NGSFYGDSTWRSSPSDLERSSSFGFGLGDASSDVMTNNSADYIGGYSVTNRQANRG 473

The following BLAST results are available for this feature:

BLAST of Lsi02G011240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNP1_ARATH	6.0e-60	37.67	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 S...	[more]
MSI2H_HUMAN	8.1e-49	40.00	RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1	[more]
MSI2H_MOUSE	1.7e-46	38.46	RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1	[more]
MSIR6_DROME	6.0e-44	49.73	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2...	[more]
RBP1_ARATH	2.3e-43	42.92	RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1	[more]

BLAST of Lsi02G011240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTE8_CUCSA	4.8e-258	95.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181500 PE=4 SV=1	[more]
A0A061GIB9_THECC	1.2e-168	65.69	RNA-binding family protein isoform 5 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1	[more]
A0A061GHM1_THECC	2.1e-168	65.76	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1	[more]
A0A061GGB0_THECC	2.1e-168	65.76	RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_030384 PE=4 SV=1	[more]
A0A067GII0_CITSI	1.9e-166	63.24	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011518mg PE=4 SV=1	[more]

BLAST of Lsi02G011240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07810.2	2.2e-129	56.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.4	1.6e-103	47.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	8.2e-100	47.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.3	4.8e-92	47.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	3.4e-61	37.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Lsi02G011240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127261\|ref\|XP_008463611.1\|	7.9e-262	96.42	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo]	[more]
gi\|449443534\|ref\|XP_004139532.1\|	6.9e-258	95.16	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus]	[more]
gi\|1009166919\|ref\|XP_015901845.1\|	2.7e-169	66.32	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba]	[more]
gi\|590626883\|ref\|XP_007026295.1\|	1.7e-168	65.69	RNA-binding family protein isoform 5 [Theobroma cacao]	[more]
gi\|590626877\|ref\|XP_007026293.1\|	3.0e-168	65.76	RNA-binding family protein isoform 3 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G011240.1	Lsi02G011240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 6..71 score: 2.3E-15coord: 106..164 score: 1.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..76 score: 1.2E-22coord: 105..177 score: 1.8
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 104..181 score: 17.967coord: 4..80 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 99..186 score: 3.0E-25coord: 4..85 score: 3.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..99 score: 3.63E-25coord: 100..202 score: 3.09
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 103..333 score: 2.0E-169coord: 2..86 score: 2.0E
None	No IPR available	PANTHER	PTHR24012:SF433	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 103..333 score: 2.0E-169coord: 2..86 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G011240	Csa1G181500	Cucumber (Chinese Long) v2	culsiB032
Lsi02G011240	CSPI01G15780	Wild cucumber (PI 183967)	cpilsiB033
Lsi02G011240	Cucsa.180480	Cucumber (Gy14) v1	cgylsiB302
Lsi02G011240	CmaCh13G003830	Cucurbita maxima (Rimu)	cmalsiB205
Lsi02G011240	CmaCh18G006000	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G011240	CmoCh18G005940	Cucurbita moschata (Rifu)	cmolsiB359
Lsi02G011240	CmoCh13G004080	Cucurbita moschata (Rifu)	cmolsiB195
Lsi02G011240	Cla009042	Watermelon (97103) v1	lsiwmB201
Lsi02G011240	MELO3C025543	Melon (DHL92) v3.5.1	lsimeB181
Lsi02G011240	ClCG01G010610	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G011240	MELO3C025543.2	Melon (DHL92) v3.6.1	lsimedB184
Lsi02G011240	Cla97C01G010390	Watermelon (97103) v2	lsiwmbB153
Lsi02G011240	Bhi08G000631	Wax gourd	lsiwgoB257
Lsi02G011240	Cp4.1LG09g06540	Cucurbita pepo (Zucchini)	cpelsiB027
Lsi02G011240	Cp4.1LG20g06600	Cucurbita pepo (Zucchini)	cpelsiB426
Lsi02G011240	CsGy1G015480	Cucumber (Gy14) v2	cgyblsiB029
Lsi02G011240	Carg25112	Silver-seed gourd	carlsiB947
Lsi02G011240	Carg25613	Silver-seed gourd	carlsiB046
Lsi02G011240	CsaV3_1G017060	Cucumber (Chinese Long) v3	cuclsiB033
Lsi02G011240	CsaV3_UNG051390	Cucumber (Chinese Long) v3	cuclsiB518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G011240	Cucumber (Gy14) v2	cgyblsiB038
Lsi02G011240	Cucumber (Gy14) v2	cgyblsiB407
Lsi02G011240	Silver-seed gourd	carlsiB949
Lsi02G011240	Cucumber (Chinese Long) v3	cuclsiB470
Lsi02G011240	Watermelon (97103) v2	lsiwmbB160
Lsi02G011240	Bottle gourd (USVL1VR-Ls)	lsilsiB064
Lsi02G011240	Cucumber (Gy14) v1	cgylsiB024
Lsi02G011240	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G011240	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G011240	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G011240	Wild cucumber (PI 183967)	cpilsiB038
Lsi02G011240	Wild cucumber (PI 183967)	cpilsiB447
Lsi02G011240	Cucumber (Chinese Long) v2	culsiB037
Lsi02G011240	Watermelon (Charleston Gray)	lsiwcgB175