CsaV3_UNG051400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG051400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionheterogeneous nuclear ribonucleoprotein 1
Locationscaffold92 : 43304 .. 44752 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACAGATGAAGATCGTCTTCGGGAGTACTTTCGGAACTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGGCCACTGGCCGTGCCCGTGGCTTCGGATTCGTTGTCTTTGCTGACCCTGTTGCTGCAGCGAGAGTTGTATTGGAAAAACATGTAATTGATGGAAGAACTGTAAGTCTTGTGTATTCTACTTTATTTTCATTGGTTTTTCCACCTGTATTAGAAGCTTTAGATGTCTTTCAAAGAATGTTCCAGTGTGTCTTCAGATTCAATTTTGTGGATTAAATATACTCGTGGAGGGATCAAGGTTTTCCTGATATCTTTTGGTGTTCCTCATGATCCAAACTTATTAGAATTCTTCAGCATTTATATGCTAAATCTCTTTATCTCGATAATTCATAGTTTTCCTTCACAGCATGAAGGGGAAGATTCGGCTATTCACATTTTAATTGGGCAATTTCTGTTTCATGTGAAATGATGACCATGTTTTTGTGGAAGTATGATGCCAATGTATGTACTTGGGTTGCCTTCATATGTCCTGGGTATATGTACAAACATTTATATATCAAATCAATACTGTGAGAGGGCTTTGGTCCTTCGATAAATTTGCAAATTTTTGTGTAGAAAGAAGTCTATCTTAATCTTCCTTAGTAGTCCTCAATGTAAAATGACCTTACTTGAACAGGATTTGTTCTATAGGTTGTACATCTATATCCTTGAGTTCTTAAGTAGTCCTCAATGTGAAACAATGAGTTGTGTATATTAGGAGGCTCGTTATCTTGTTGAGTTTGTCATGGACATTAGGCTTTATGTGTGATGGCTTCCACGTGTGTTAAAAAGATACGTTTTGTTGCTTCCAGACCTTTATGTGTATTGGTAAAGAAAGTAAATTCTATCATTTCCATGTTTTGATGTTAGTTTTTTTTGTCTTCTTTTTTCTTTTGTTCAGGTTGAAGCAAAGAAGGCGGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAATAATACTGGTATTCTTGGATCACCTGGTCCTACTCGCACAAAGAAGATATTTGTTGGAGGATTGGCATCCACTGTTACAGAGAGTGACTTCAAAAGTATTTTGATCAGTTTGGTACAATCGTAGATGTCGTTGTGATGTATGATCATAATACTCAAAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAGAGGGCTGTTCCCAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGCTGGATATCCTTTCAATTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCGCAGTTGGGGATATGGATTGA

mRNA sequence

ATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACAGATGAAGATCGTCTTCGGGAGTACTTTCGGAACTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGGCCACTGGCCGTGCCCGTGGCTTCGGATTCGTTGTCTTTGCTGACCCTGTTGCTGCAGCGAGAGTTGTATTGGAAAAACATGTAATTGATGGAAGAACTGTTGAAGCAAAGAAGGCGGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAATAATACTGGTATTCTTGGATCACCTGGTCCTACTCGCACAAAGAAGATATTTGTTGGAGGATTGGCATCCACTGTTACAGAGAGTGACTTCAAAAATGTCGTTGTGATGTATGATCATAATACTCAAAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAGAGGGCTGTTCCCAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGCTGGATATCCTTTCAATTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCGCAGTTGGGGATATGGATTGA

Coding sequence (CDS)

ATGGATCCTGGCAAGCTTTTCATTGGTGGTATTTCGTGGGACACAGATGAAGATCGTCTTCGGGAGTACTTTCGGAACTTTGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGGCCACTGGCCGTGCCCGTGGCTTCGGATTCGTTGTCTTTGCTGACCCTGTTGCTGCAGCGAGAGTTGTATTGGAAAAACATGTAATTGATGGAAGAACTGTTGAAGCAAAGAAGGCGGTTCCTCGAGATGATCAAAACATTTTGAGCAGGAATAATACTGGTATTCTTGGATCACCTGGTCCTACTCGCACAAAGAAGATATTTGTTGGAGGATTGGCATCCACTGTTACAGAGAGTGACTTCAAAAATGTCGTTGTGATGTATGATCATAATACTCAAAGACCAAGAGGTTTTGGATTTATCACTTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACTTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAGAGGGCTGTTCCCAAGGAATCATCACCAGTGCCAAATCGAAATCAATTAGCTGGATATCCTTTCAATTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAATCCAACCGCAGTTGGGGATATGGATTGA

Protein sequence

MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKNVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVGDMD
Homology
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BLAST of CsaV3_UNG051400 vs. NCBI nr
Match: XP_004139532.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN65038.1 hypothetical protein Csa_1G181500 [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 2.7e-113
Identity = 209/220 (95.00%), Postives = 210/220 (95.45%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 220

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BLAST of CsaV3_UNG051400 vs. NCBI nr
Match: XP_008463611.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 413.7 bits (1062), Expect = 3.8e-112
Identity = 206/220 (93.64%), Postives = 209/220 (95.00%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDR TGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKESSPVPNRNQLAGYP+NFGRVGSYLNGYNQGYNPT+VG
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVG 220

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BLAST of CsaV3_UNG051400 vs. NCBI nr
Match: XP_022142553.1 (heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia] >XP_022142555.1 heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia])

HSP 1 Score: 402.5 bits (1033), Expect = 8.9e-109
Identity = 200/220 (90.91%), Postives = 205/220 (93.18%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVIAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKESSPVPNRNQL GYP+ FGRVGSYLNGYNQGYNP +VG
Sbjct: 181 PKESSPVPNRNQLGGYPYGFGRVGSYLNGYNQGYNPASVG 220

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BLAST of CsaV3_UNG051400 vs. NCBI nr
Match: XP_023001332.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 400.6 bits (1028), Expect = 3.4e-108
Identity = 199/220 (90.45%), Postives = 205/220 (93.18%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKESSPVPNR+QL  YP+ FGRVGSYLNGYNQGYNPT+VG
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVG 220

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BLAST of CsaV3_UNG051400 vs. NCBI nr
Match: XP_023001331.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 400.6 bits (1028), Expect = 3.4e-108
Identity = 199/220 (90.45%), Postives = 205/220 (93.18%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYF++FGEVVEVMIMRDR TGRARGFGFVVFADPV AAR
Sbjct: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 93  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKESSPVPNR+QL  YP+ FGRVGSYLNGYNQGYNPT+VG
Sbjct: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVG 252

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BLAST of CsaV3_UNG051400 vs. TAIR10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-83
Identity = 158/222 (71.17%), Postives = 182/222 (81.98%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLFIGGISWDT+E+RL+EYF +FGEV+E +I++DR TGRARGFGFVVFADP  A  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 121
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 122 FK----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 181
           FK          +VVVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 182 VPKESSPVPNRNQL-AGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           VPKE SP P+R+ L AGY +   RV + LNGY QG+NP AVG
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVG 225

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BLAST of CsaV3_UNG051400 vs. TAIR10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 275.8 bits (704), Expect = 2.3e-74
Identity = 141/210 (67.14%), Postives = 167/210 (79.52%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLFIGGISWDTDE+RL+EYF  +G++VE +IMRDR TGRARGFGF+VFADP  A RV
Sbjct: 13  DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGIL-------GSPGPTRTKKIFVGGLAST 121
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + +        G+ G  RTKKIFVGGL S+
Sbjct: 73  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132

Query: 122 VTESDFKN----------VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMV 181
           +TE++FKN          VVVMYDHNTQRPRGFGFIT++SEESV+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192

Query: 182 EVKRAVPKE-SSPVPNRNQLAGYPFNFGRV 194
           EVKRAVPKE SS  PNR+ L GY  N+G V
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVV 222

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BLAST of CsaV3_UNG051400 vs. TAIR10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 271.6 bits (693), Expect = 4.3e-73
Identity = 141/222 (63.51%), Postives = 169/222 (76.13%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLFIGGISWDTDE+RLR+YF N+G+VVE +IMRDRATGRARGFGF+VFADP  + RV
Sbjct: 4   DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGI-LGSP---GPTRTKKIFVGGLASTVTE 121
           +++KH+IDGRTVEAKKAVPRDDQ +L R+ + I L SP   G  RTKKIFVGGL S++TE
Sbjct: 64  IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123

Query: 122 SDFKN----------VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 181
            +FKN          VVVMYDHNTQRPRGFGFIT++S+++V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183

Query: 182 RAVPKESSPVPNRNQLAGYPFNFG------RVGSYLNGYNQG 204
           RAVPKE SPV N         N+G         SY N +  G
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPG 225

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BLAST of CsaV3_UNG051400 vs. TAIR10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 270.4 bits (690), Expect = 9.5e-73
Identity = 140/241 (58.09%), Postives = 173/241 (71.78%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+  KLFIGGISW+T EDRLR+YF +FGEV+E +IM+DRATGRARGFGFVVFADP  A R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 61  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNILSRNNTGILGSP 120
           VVL KH+IDG+                       VEAKKAVPRDD  + +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 121 GPTRTKKIFVGGLASTVTESDFK----------NVVVMYDHNTQRPRGFGFITYESEESV 180
           GP+ +KKIFVGGLAS+VTE++FK          +VVVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 181 EKVLYKTFHELNGKMVEVKRAVPKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTA 210
           +KVL KTFHELNGKMVEVK AVPK+ +    RNQ+    F   R+ S LN Y QG++P+ 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

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BLAST of CsaV3_UNG051400 vs. TAIR10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 207.6 bits (527), Expect = 7.6e-54
Identity = 103/189 (54.50%), Postives = 136/189 (71.96%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLFIGGISWDTDE+ LREYF NFGEV++V +MR++ATGR RGFGFV F+DP    RV
Sbjct: 4   DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNT----GILGSPGPTRTKKIFVGGLASTVTE 121
           + +KH ID R V+ K+A+ R++Q+   R+ T        S    RTKKIFVGGL   +T 
Sbjct: 64  LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTS 123

Query: 122 SDFK----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 177
            +F+          + V+M D  TQRPRGFGF++++SE+SV+ VL+KTFH+LNGK VEVK
Sbjct: 124 DEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183

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BLAST of CsaV3_UNG051400 vs. Swiss-Prot
Match: sp|Q8W034|RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-52
Identity = 98/189 (51.85%), Postives = 138/189 (73.02%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D GKLF+GGISW+TDED+LRE+F N+GEV + ++MRD+ TGR RGFGFV+F+DP    RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 121
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 122 SDFK----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 177
            +F+          +V +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

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BLAST of CsaV3_UNG051400 vs. Swiss-Prot
Match: sp|Q96DH6|MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.6e-40
Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD  T R+RGFGFV FADP +  +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 122 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K          + ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRNQLAGYPF 189
           PKE   P   R +  G P+
Sbjct: 199 PKEVMFPPGTRGRARGLPY 205

[Close]
BLAST of CsaV3_UNG051400 vs. Swiss-Prot
Match: sp|Q920Q6|MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.6e-40
Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD  T R+RGFGFV FADP +  +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 62  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 121
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 122 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 181
           K          + ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 182 PKE-SSPVPNRNQLAGYPF 189
           PKE   P   R +  G P+
Sbjct: 199 PKEVMFPPGTRGRARGLPY 205

[Close]
BLAST of CsaV3_UNG051400 vs. Swiss-Prot
Match: sp|Q9C652|RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.6e-38
Identity = 88/204 (43.14%), Postives = 127/204 (62.25%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           D  KLF+GGI+ +T E+ L++YF  +G V+E ++ +++ TG+ RGFGFV FA+     + 
Sbjct: 4   DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63

Query: 62  VLEKHVIDGRTVEAKKAVPRDD-----------QNILSRNNTGI--LGSPGPT-RTKKIF 121
           + + H I G+ V+ +KA+ + +           +  + + N G+  + S G T RTKKIF
Sbjct: 64  LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123

Query: 122 VGGLASTVTESDFK----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFH 181
           VGGL+S  TE +FK          +VVVM+D  T RPRGFGF+TY+SE+SVE V+   FH
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183

[Close]
BLAST of CsaV3_UNG051400 vs. Swiss-Prot
Match: sp|O94432|YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.6e-38
Identity = 79/198 (39.90%), Postives = 119/198 (60.10%), Query Frame = 0 

Query: 2   DPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAARV 61
           + GK+FIGG++W+T +D LR+YF  FGEV++  +MRD  TGR+RGFGF+ F +P     V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220

Query: 62  VLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFK 121
           + ++H +DG+ ++ K+A+PR++Q                 +T K+FVGG+    TE +F+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFR 280

Query: 122 N----------VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVP 181
           N            +M D +T RPRGFGF+TYE+E +VE  + + +  ++GK VEVKRA P
Sbjct: 281 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 340

Query: 182 KESSPVPNRNQLAGYPFN 190
           K S    +     GY  N
Sbjct: 341 KASLRDSHDRHQHGYHGN 342

[Close]
BLAST of CsaV3_UNG051400 vs. TrEMBL
Match: tr|A0A0A0LTE8|A0A0A0LTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.8e-113
Identity = 209/220 (95.00%), Postives = 210/220 (95.45%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG
Sbjct: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 220

[Close]
BLAST of CsaV3_UNG051400 vs. TrEMBL
Match: tr|A0A1S3CK54|A0A1S3CK54_CUCME (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501720 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.5e-112
Identity = 206/220 (93.64%), Postives = 209/220 (95.00%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDR TGRARGFGFVVFADPVAAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKESSPVPNRNQLAGYP+NFGRVGSYLNGYNQGYNPT+VG
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVG 220

[Close]
BLAST of CsaV3_UNG051400 vs. TrEMBL
Match: tr|A0A2N9IXN4|A0A2N9IXN4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58019 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.2e-93
Identity = 177/220 (80.45%), Postives = 192/220 (87.27%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+PGKLFIGGISWDT+EDRLREYF+ FGEVVE +IM+DRATGRARGFGFVVFADP AA R
Sbjct: 10  MEPGKLFIGGISWDTNEDRLREYFQCFGEVVEAVIMKDRATGRARGFGFVVFADPTAAER 69

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKHVIDGRTVEAKKAVPRDDQNIL+RNN+ I GSPGP RTKKIFVGGLASTVTESDF
Sbjct: 70  VVMEKHVIDGRTVEAKKAVPRDDQNILNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 129

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITY+SEESVE VLYKTFHELNGK+VEVKRAV
Sbjct: 130 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEESVENVLYKTFHELNGKLVEVKRAV 189

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKE SP P+R QL GY +   RV S LNGYNQGYNP++VG
Sbjct: 190 PKELSPGPSRGQLGGYNYGLSRV-SLLNGYNQGYNPSSVG 228

[Close]
BLAST of CsaV3_UNG051400 vs. TrEMBL
Match: tr|A0A2I4EWT0|A0A2I4EWT0_9ROSI (heterogeneous nuclear ribonucleoprotein 1-like isoform X3 OS=Juglans regia OX=51240 GN=LOC108993403 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 5.0e-92
Identity = 170/220 (77.27%), Postives = 190/220 (86.36%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+PGKLFIGGISWDT+EDRL+EYF++FG VVE +IM+DRATGRARGFGFVVFADP  A R
Sbjct: 3   MEPGKLFIGGISWDTNEDRLKEYFQSFGAVVEAVIMKDRATGRARGFGFVVFADPAVAER 62

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKHVIDGRTVEAKKAVPRDDQNILSRNN  + GSPGP RTKKIFVGGLASTVTE+DF
Sbjct: 63  VVMEKHVIDGRTVEAKKAVPRDDQNILSRNNGSMHGSPGPARTKKIFVGGLASTVTENDF 122

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITY+SEE+VEKVLYKTFHELNGK+VEVKRAV
Sbjct: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKTFHELNGKLVEVKRAV 182

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKE SP P+R Q+ GY +   RV S+LNGY QGYN ++VG
Sbjct: 183 PKEQSPGPSRGQMGGYNYGQSRVSSFLNGYTQGYNQSSVG 222

[Close]
BLAST of CsaV3_UNG051400 vs. TrEMBL
Match: tr|A0A2I4EWS5|A0A2I4EWS5_9ROSI (heterogeneous nuclear ribonucleoprotein 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108993403 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 5.0e-92
Identity = 170/220 (77.27%), Postives = 190/220 (86.36%), Query Frame = 0 

Query: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAAAR 60
           M+PGKLFIGGISWDT+EDRL+EYF++FG VVE +IM+DRATGRARGFGFVVFADP  A R
Sbjct: 9   MEPGKLFIGGISWDTNEDRLKEYFQSFGAVVEAVIMKDRATGRARGFGFVVFADPAVAER 68

Query: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120
           VV+EKHVIDGRTVEAKKAVPRDDQNILSRNN  + GSPGP RTKKIFVGGLASTVTE+DF
Sbjct: 69  VVMEKHVIDGRTVEAKKAVPRDDQNILSRNNGSMHGSPGPARTKKIFVGGLASTVTENDF 128

Query: 121 K----------NVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180
           K          +VVVMYDHNTQRPRGFGFITY+SEE+VEKVLYKTFHELNGK+VEVKRAV
Sbjct: 129 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKTFHELNGKLVEVKRAV 188

Query: 181 PKESSPVPNRNQLAGYPFNFGRVGSYLNGYNQGYNPTAVG 211
           PKE SP P+R Q+ GY +   RV S+LNGY QGYN ++VG
Sbjct: 189 PKEQSPGPSRGQMGGYNYGQSRVSSFLNGYTQGYNQSSVG 228

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG051400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139532.12.7e-11395.00PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN65038... [more]
XP_008463611.13.8e-11293.64PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo][more]
XP_022142553.18.9e-10990.91heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia] >XP_022142555.1 ... [more]
XP_023001332.13.4e-10890.45heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita maxima][more]
XP_023001331.13.4e-10890.45heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita maxima][more]
BLAST of CsaV3_UNG051400 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07810.21.6e-8371.17RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.12.3e-7467.14RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G55550.34.3e-7363.51RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G47620.49.5e-7358.09RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G33410.17.6e-5454.50RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CsaV3_UNG051400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8W034|RNP1_ARATH1.8e-5251.85Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
sp|Q96DH6|MSI2H_HUMAN4.6e-4045.73RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1[more]
sp|Q920Q6|MSI2H_MOUSE4.6e-4045.73RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1[more]
sp|Q9C652|RBP1_ARATH5.6e-3843.14RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1[more]
sp|O94432|YHKF_SCHPO5.6e-3839.90Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
BLAST of CsaV3_UNG051400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTE8|A0A0A0LTE8_CUCSA1.8e-11395.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181500 PE=4 SV=1[more]
tr|A0A1S3CK54|A0A1S3CK54_CUCME2.5e-11293.64heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350172... [more]
tr|A0A2N9IXN4|A0A2N9IXN4_FAGSY1.2e-9380.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58019 PE=4 SV=1[more]
tr|A0A2I4EWT0|A0A2I4EWT0_9ROSI5.0e-9277.27heterogeneous nuclear ribonucleoprotein 1-like isoform X3 OS=Juglans regia OX=51... [more]
tr|A0A2I4EWS5|A0A2I4EWS5_9ROSI5.0e-9277.27heterogeneous nuclear ribonucleoprotein 1-like isoform X1 OS=Juglans regia OX=51... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG051400.1CsaV3_UNG051400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..76
e-value: 3.9E-23
score: 92.9
coord: 105..167
e-value: 8.5E-12
score: 55.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 119..154
e-value: 2.5E-7
score: 30.3
coord: 6..72
e-value: 6.0E-17
score: 61.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 4..80
score: 18.035
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 104..171
score: 11.196
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 3..86
e-value: 1.0E-25
score: 91.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 97..179
e-value: 1.6E-15
score: 59.1
NoneNo IPR availablePANTHERPTHR44291FAMILY NOT NAMEDcoord: 1..211
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 100..192
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 3..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_UNG051400CmoCh18G005940Cucurbita moschata (Rifu)cmocucB0496
CsaV3_UNG051400Cp4.1LG09g06540Cucurbita pepo (Zucchini)cpecucB0056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_UNG051400Cucumber (Chinese Long) v3cuccucB056
CsaV3_UNG051400Silver-seed gourdcarcucB0057
CsaV3_UNG051400Silver-seed gourdcarcucB1085
CsaV3_UNG051400Cucumber (Gy14) v2cgybcucB051
CsaV3_UNG051400Cucumber (Gy14) v1cgycucB291
CsaV3_UNG051400Cucurbita maxima (Rimu)cmacucB0268
CsaV3_UNG051400Cucurbita maxima (Rimu)cmacucB0510
CsaV3_UNG051400Cucurbita moschata (Rifu)cmocucB0258
CsaV3_UNG051400Cucurbita pepo (Zucchini)cpecucB0655
CsaV3_UNG051400Wild cucumber (PI 183967)cpicucB060
CsaV3_UNG051400Bottle gourd (USVL1VR-Ls)cuclsiB518
CsaV3_UNG051400Melon (DHL92) v3.5.1cucmeB527
CsaV3_UNG051400Melon (DHL92) v3.6.1cucmedB514
CsaV3_UNG051400Watermelon (Charleston Gray)cucwcgB534
CsaV3_UNG051400Watermelon (97103) v1cucwmB575
CsaV3_UNG051400Watermelon (97103) v2cucwmbB533
CsaV3_UNG051400Wax gourdcucwgoB671