CmoCh06G012340 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G012340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Rapid alkalinization factor 1
Location	Cmo_Chr06 : 9334796 .. 9335182 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTGTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATACCAAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCCTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCACGATGTAAAGACTTGA

mRNA sequence

ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTGTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATACCAAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCCTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCACGATGTAAAGACTTGA

Coding sequence (CDS)

ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTGTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATACCAAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCCTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCACGATGTAAAGACTTGA

Homology

[Close]

BLAST of CmoCh06G012340 vs. Swiss-Prot
Match: RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.3e-25
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1


Query: 11  LSILLLPLTFLQTLFPLCDAVLDLRSLKGNQIDLIPKGVCNQKIGECLTEPEMESEISRR 70
           L+++ L L  LQT   +    + + S+ G    ++ +   N  IGE   E  M SEISRR
Sbjct: 5   LALVYLSLLCLQTHLSI-SVTVPIPSVNGEIDAMLNR---NGVIGEEEGEEMMPSEISRR 64

Query: 71  VLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDVKT 129
           V+MM+K+YISYETLRRDMVPC +PG SYY C  G AN+Y+RGC VITRCARD +D+KT
Sbjct: 65  VMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCARDTNDIKT 118

[Close]

BLAST of CmoCh06G012340 vs. Swiss-Prot
Match: RLF31_ARATH (Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-24
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 51  NQKIGECLTEPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYD 110
           N  IGE   E  M +EISRRVLM QKRYI YETLRRDMVPC +PG SYY+C  G ANSY 
Sbjct: 38  NSIIGE--DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYS 97

Query: 111 RGCEVITRCARDVHDVKT 129
           RGC+ ITRCARD +D+ T
Sbjct: 98  RGCDTITRCARDTNDINT 113

[Close]

BLAST of CmoCh06G012340 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 1


Query: 39  GNQIDLIPKGV------CNQKIGECLTEPE---MESEISRRVLMMQKRYISYETLRRDMV 98
           G+ +D +  G       C   I EC+ E E    +S+ISRR+L  QK+YISY  +RR+ V
Sbjct: 28  GDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSV 87

Query: 99  PCSRPGVSYYECHPG-PANSYDRGCEVITRCAR 122
           PCSR G SYY C  G  AN Y RGC  ITRC R
Sbjct: 88  PCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

[Close]

BLAST of CmoCh06G012340 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 48  GVCNQKIGECLTEPE---MESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPG 107
           G C   IGEC+ E E   ++SE +RR+L   K+YISY  L+++ VPCSR G SYY C PG
Sbjct: 39  GGCKGSIGECIAEEEEFELDSESNRRILAT-KKYISYGALQKNSVPCSRRGASYYNCKPG 98

Query: 108 -PANSYDRGCEVITRC 120
             AN Y RGC  ITRC
Sbjct: 99  AQANPYSRGCSAITRC 113

[Close]

BLAST of CmoCh06G012340 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 46/86 (53.49%), Postives = 52/86 (60.47%), Query Frame = 1


Query: 43  DLIP-KGVCNQKIGECLT-----EPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGV 102
           D +P +  CN  I EC       E EM+SEI+RR+L   K YISY  LRR+ VPCSR G 
Sbjct: 32  DFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPCSRRGA 91

Query: 103 SYYECHPG-PANSYDRGCEVITRCAR 122
           SYY C  G  AN Y RGC  ITRC R
Sbjct: 92  SYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]

BLAST of CmoCh06G012340 vs. TrEMBL
Match: A0A0A0L7V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129640 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.5e-53
Identity = 103/128 (80.47%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPLCDAVLDLRSLKGNQIDLIPKGVCNQKIGECLTE 60
           MAK   LFFL SI+  PL FLQT F  CDA+LDLRS KG++++++ KGVCNQKIGECLT+
Sbjct: 1   MAKSLFLFFLFSIIF-PLVFLQTHFSFCDAILDLRSFKGSEMEVMAKGVCNQKIGECLTD 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120
           PEMESEISRRVLMMQK+YISY+TLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA
Sbjct: 61  PEMESEISRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120

Query: 121 RDVHDVKT 129
           RDVHD+ T
Sbjct: 121 RDVHDINT 127

[Close]

BLAST of CmoCh06G012340 vs. TrEMBL
Match: M5XU33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013295mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-33
Identity = 79/120 (65.83%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 13  ILLLPLTFLQTLFPLCDAV--LDLRSLKGNQID-LIPKG-VCNQKIGECLTEPEMESEIS 72
           I  L L  + T F +C+ V   DL SLKG+ ID ++  G  CNQKIGECLTEPEMESEIS
Sbjct: 12  ISCLSLLLIHTHFSICNGVSAFDLNSLKGSGIDGMVGAGRACNQKIGECLTEPEMESEIS 71

Query: 73  RRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDVKT 129
           RRVL MQK+YISYETLRRD+VPC +PG SYY CH   AN Y RGCEVITRCAR  +D+KT
Sbjct: 72  RRVLAMQKKYISYETLRRDLVPCGKPGASYYNCHAVAANPYSRGCEVITRCARG-NDIKT 130

[Close]

BLAST of CmoCh06G012340 vs. TrEMBL
Match: B9GFJ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32790g PE=4 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 3.2e-32
Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 12  SILLLPLTFLQTLFPLC--DAVLDLRSLKGNQIDLIPKGVCNQKIGECLTEPEMESEISR 71
           ++L L L FL TLF +C  D+V  L SLK ++ID I    C++KIGEC  E EMESEISR
Sbjct: 12  TLLYLSLLFLLTLFTICNADSVSGLNSLKTSEIDAIVSKGCSEKIGECFEESEMESEISR 71

Query: 72  RVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDV 127
           RVL+M K+YISYETLRRD+VPC +PG SYY+C+   A+ Y+RGCEVITRCAR V D+
Sbjct: 72  RVLLMHKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYNRGCEVITRCARSVKDI 128

[Close]

BLAST of CmoCh06G012340 vs. TrEMBL
Match: A0A061EJW1_THECC (RALFL33, putative OS=Theobroma cacao GN=TCM_020225 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.2e-32
Identity = 74/122 (60.66%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 10  LLSILLLPLTFLQTLFPLCDAV--LDLRS-LKGNQIDLIPKGVCNQKIGECLTEPEMESE 69
           L++IL L   F QT    CDAV  LDL + LK +++D++   VCN K+ +CL E EMESE
Sbjct: 7   LITILSLSFLFFQT----CDAVSILDLNNALKHSEVDVMVPRVCNNKLEDCLEEQEMESE 66

Query: 70  ISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDV 129
            +RRVL+MQ+RYISYETLRRDMVPC++PG SYY+C+ G AN Y+RGCEVITRCAR + D+
Sbjct: 67  SNRRVLVMQRRYISYETLRRDMVPCAKPGASYYDCNAGQANPYNRGCEVITRCARGIKDI 124

[Close]

BLAST of CmoCh06G012340 vs. TrEMBL
Match: B9S9Y5_RICCO (RALFL33, putative OS=Ricinus communis GN=RCOM_0523490 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.6e-31
Identity = 71/119 (59.66%), Postives = 87/119 (73.11%), Query Frame = 1


Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPLCDAVLDLRSLKGNQIDLIPKGVCNQKIGECLTE 60
           M +PT  F LL+ LLL      TLF +C+ V  +   K  ++D I + VC +KIG+C  E
Sbjct: 1   MLRPT--FCLLAFLLL-----HTLFTICNGV-SVSGFKNTEVDAIMRRVCTKKIGDCFEE 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRC 120
           PEMESEISRRVL+MQK+YISYETL+RDMVPC +PG SYY+CH G AN Y RGCE+ITRC
Sbjct: 61  PEMESEISRRVLVMQKKYISYETLKRDMVPCDKPGASYYDCHAGEANPYSRGCEMITRC 111

[Close]

BLAST of CmoCh06G012340 vs. TAIR10
Match: AT3G23805.1 (AT3G23805.1 ralf-like 24)

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-26
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1


Query: 11  LSILLLPLTFLQTLFPLCDAVLDLRSLKGNQIDLIPKGVCNQKIGECLTEPEMESEISRR 70
           L+++ L L  LQT   +    + + S+ G    ++ +   N  IGE   E  M SEISRR
Sbjct: 5   LALVYLSLLCLQTHLSI-SVTVPIPSVNGEIDAMLNR---NGVIGEEEGEEMMPSEISRR 64

Query: 71  VLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDVKT 129
           V+MM+K+YISYETLRRDMVPC +PG SYY C  G AN+Y+RGC VITRCARD +D+KT
Sbjct: 65  VMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCARDTNDIKT 118

[Close]

BLAST of CmoCh06G012340 vs. TAIR10
Match: AT4G13950.1 (AT4G13950.1 ralf-like 31)

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-25
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 51  NQKIGECLTEPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYD 110
           N  IGE   E  M +EISRRVLM QKRYI YETLRRDMVPC +PG SYY+C  G ANSY 
Sbjct: 38  NSIIGE--DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYS 97

Query: 111 RGCEVITRCARDVHDVKT 129
           RGC+ ITRCARD +D+ T
Sbjct: 98  RGCDTITRCARDTNDINT 113

[Close]

BLAST of CmoCh06G012340 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 84.0 bits (206), Expect = 7.6e-17
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 1


Query: 39  GNQIDLIPKGV------CNQKIGECLTEPE---MESEISRRVLMMQKRYISYETLRRDMV 98
           G+ +D +  G       C   I EC+ E E    +S+ISRR+L  QK+YISY  +RR+ V
Sbjct: 28  GDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSV 87

Query: 99  PCSRPGVSYYECHPG-PANSYDRGCEVITRCAR 122
           PCSR G SYY C  G  AN Y RGC  ITRC R
Sbjct: 88  PCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

[Close]

BLAST of CmoCh06G012340 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-16
Identity = 46/86 (53.49%), Postives = 52/86 (60.47%), Query Frame = 1


Query: 43  DLIP-KGVCNQKIGECLT-----EPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGV 102
           D +P +  CN  I EC       E EM+SEI+RR+L   K YISY  LRR+ VPCSR G 
Sbjct: 32  DFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPCSRRGA 91

Query: 103 SYYECHPG-PANSYDRGCEVITRCAR 122
           SYY C  G  AN Y RGC  ITRC R
Sbjct: 92  SYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]

BLAST of CmoCh06G012340 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 1


Query: 55  GECLTEPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPG-PANSYDRGC 114
           GE   E EM+SEI+RR+L   +RYISY  LRR+ +PCSR G SYY C  G  AN Y RGC
Sbjct: 71  GEMGEEFEMDSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGC 130

Query: 115 EVITRCAR 122
             ITRC R
Sbjct: 131 SAITRCRR 137

[Close]

BLAST of CmoCh06G012340 vs. NCBI nr
Match: gi|659075762|ref|XP_008438316.1| (PREDICTED: protein RALF-like 24 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPLCDAVLDLRSLKGNQIDLIPKGVCNQKIGECLTE 60
           MAK   LFF L  ++ PL FLQT F  CDA+LDLRS KG+++D++ KGVCNQKIGECLT+
Sbjct: 1   MAKSLFLFFFLFSIIFPLVFLQTHFSFCDAILDLRSFKGSEMDVMAKGVCNQKIGECLTD 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120
           PEMESEISRRVLMMQK+YISY+TLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA
Sbjct: 61  PEMESEISRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120

Query: 121 RDVHDVKT 129
           RDVHD+ T
Sbjct: 121 RDVHDINT 128

[Close]

BLAST of CmoCh06G012340 vs. NCBI nr
Match: gi|778677782|ref|XP_011650863.1| (PREDICTED: protein RALF-like 24 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 3.6e-53
Identity = 103/128 (80.47%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPLCDAVLDLRSLKGNQIDLIPKGVCNQKIGECLTE 60
           MAK   LFFL SI+  PL FLQT F  CDA+LDLRS KG++++++ KGVCNQKIGECLT+
Sbjct: 1   MAKSLFLFFLFSIIF-PLVFLQTHFSFCDAILDLRSFKGSEMEVMAKGVCNQKIGECLTD 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120
           PEMESEISRRVLMMQK+YISY+TLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA
Sbjct: 61  PEMESEISRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120

Query: 121 RDVHDVKT 129
           RDVHD+ T
Sbjct: 121 RDVHDINT 127

[Close]

BLAST of CmoCh06G012340 vs. NCBI nr
Match: gi|596217112|ref|XP_007223934.1| (hypothetical protein PRUPE_ppa013295mg [Prunus persica])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 79/120 (65.83%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 13  ILLLPLTFLQTLFPLCDAV--LDLRSLKGNQID-LIPKG-VCNQKIGECLTEPEMESEIS 72
           I  L L  + T F +C+ V   DL SLKG+ ID ++  G  CNQKIGECLTEPEMESEIS
Sbjct: 12  ISCLSLLLIHTHFSICNGVSAFDLNSLKGSGIDGMVGAGRACNQKIGECLTEPEMESEIS 71

Query: 73  RRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDVKT 129
           RRVL MQK+YISYETLRRD+VPC +PG SYY CH   AN Y RGCEVITRCAR  +D+KT
Sbjct: 72  RRVLAMQKKYISYETLRRDLVPCGKPGASYYNCHAVAANPYSRGCEVITRCARG-NDIKT 130

[Close]

BLAST of CmoCh06G012340 vs. NCBI nr
Match: gi|743919221|ref|XP_011003629.1| (PREDICTED: protein RALF-like 24 [Populus euphratica])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 72/118 (61.02%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 12  SILLLPLTFLQTLFPLC--DAVLDLRSLKGNQIDLIPKGVCNQKIGECLTEPEMESEISR 71
           ++L L L FL  LF +C  D+V  L SLK ++ID+I    C++KIGEC  EPEMESEISR
Sbjct: 12  TLLYLSLLFLLALFTICNADSVSGLNSLKTSEIDVIVGKGCSEKIGECFEEPEMESEISR 71

Query: 72  RVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDVK 128
           R L+MQK+YISYETLRRD+VPC +PG SYY+C+   A+ Y RGCEVITRCAR + D+K
Sbjct: 72  RALLMQKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYSRGCEVITRCARSIKDIK 129

[Close]

BLAST of CmoCh06G012340 vs. NCBI nr
Match: gi|566152293|ref|XP_002298677.2| (hypothetical protein POPTR_0001s32790g [Populus trichocarpa])

HSP 1 Score: 146.0 bits (367), Expect = 4.6e-32
Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 12  SILLLPLTFLQTLFPLC--DAVLDLRSLKGNQIDLIPKGVCNQKIGECLTEPEMESEISR 71
           ++L L L FL TLF +C  D+V  L SLK ++ID I    C++KIGEC  E EMESEISR
Sbjct: 12  TLLYLSLLFLLTLFTICNADSVSGLNSLKTSEIDAIVSKGCSEKIGECFEESEMESEISR 71

Query: 72  RVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDV 127
           RVL+M K+YISYETLRRD+VPC +PG SYY+C+   A+ Y+RGCEVITRCAR V D+
Sbjct: 72  RVLLMHKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYNRGCEVITRCARSVKDI 128

The following BLAST results are available for this feature:

BLAST of CmoCh06G012340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF24_ARATH	9.3e-25	52.54	Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1	[more]
RLF31_ARATH	4.6e-24	67.95	Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1	[more]
RLF22_ARATH	1.3e-15	48.39	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]
RALF_TOBAC	6.7e-15	53.95	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]
RLF33_ARATH	1.1e-14	53.49	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]

BLAST of CmoCh06G012340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7V8_CUCSA	2.5e-53	80.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129640 PE=4 SV=1	[more]
M5XU33_PRUPE	3.8e-33	65.83	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013295mg PE=4 SV=1	[more]
B9GFJ2_POPTR	3.2e-32	61.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32790g PE=4 SV=2	[more]
A0A061EJW1_THECC	3.2e-32	60.66	RALFL33, putative OS=Theobroma cacao GN=TCM_020225 PE=4 SV=1	[more]
B9S9Y5_RICCO	4.6e-31	59.66	RALFL33, putative OS=Ricinus communis GN=RCOM_0523490 PE=4 SV=1	[more]

BLAST of CmoCh06G012340 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23805.1	5.2e-26	52.54	ralf-like 24	[more]
AT4G13950.1	2.6e-25	67.95	ralf-like 31	[more]
AT3G05490.1	7.6e-17	48.39	ralf-like 22	[more]
AT4G15800.1	6.4e-16	53.49	ralf-like 33	[more]
AT3G16570.1	4.1e-15	58.82	rapid alkalinization factor 23	[more]

BLAST of CmoCh06G012340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075762\|ref\|XP_008438316.1\|	1.2e-53	79.69	PREDICTED: protein RALF-like 24 [Cucumis melo]	[more]
gi\|778677782\|ref\|XP_011650863.1\|	3.6e-53	80.47	PREDICTED: protein RALF-like 24 [Cucumis sativus]	[more]
gi\|596217112\|ref\|XP_007223934.1\|	5.4e-33	65.83	hypothetical protein PRUPE_ppa013295mg [Prunus persica]	[more]
gi\|743919221\|ref\|XP_011003629.1\|	5.4e-33	61.02	PREDICTED: protein RALF-like 24 [Populus euphratica]	[more]
gi\|566152293\|ref\|XP_002298677.2\|	4.6e-32	61.54	hypothetical protein POPTR_0001s32790g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G012340.1	CmoCh06G012340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 60..121 score: 3.4
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 1..123 score: 4.9
None	No IPR available	PANTHER	PTHR33136:SF10	PROTEIN RALF-LIKE 24-RELATED	coord: 1..123 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G012340	Cucsa.256690	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G012340	CmaCh06G011970	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G012340	Cla021396	Watermelon (97103) v1	cmowmB793
CmoCh06G012340	Csa3G129640	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G012340	MELO3C006289	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G012340	ClCG05G003080	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G012340	CSPI03G10560	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G012340	Lsi05G018650	Bottle gourd (USVL1VR-Ls)	cmolsiB757
CmoCh06G012340	Cp4.1LG03g17800	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G012340	Cp4.1LG08g02630	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G012340	CsaV3_3G010700	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G012340	Cla97C05G083710	Watermelon (97103) v2	cmowmbB833
CmoCh06G012340	Bhi01G000140	Wax gourd	cmowgoB1006
CmoCh06G012340	Carg14912	Silver-seed gourd	carcmoB0852
CmoCh06G012340	Carg06309	Silver-seed gourd	carcmoB1288

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G012340	CmoCh14G019670	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G012340	Watermelon (97103) v2	cmowmbB837
CmoCh06G012340	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh06G012340	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh06G012340	Cucumber (Gy14) v1	cgycmoB0735
CmoCh06G012340	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G012340	Cucurbita maxima (Rimu)	cmacmoB362
CmoCh06G012340	Cucurbita maxima (Rimu)	cmacmoB910
CmoCh06G012340	Wild cucumber (PI 183967)	cmocpiB813
CmoCh06G012340	Watermelon (Charleston Gray)	cmowcgB746
CmoCh06G012340	Cucurbita pepo (Zucchini)	cmocpeB765
CmoCh06G012340	Cucurbita pepo (Zucchini)	cmocpeB777
CmoCh06G012340	Bottle gourd (USVL1VR-Ls)	cmolsiB733
CmoCh06G012340	Cucumber (Gy14) v2	cgybcmoB248
CmoCh06G012340	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G012340	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G012340	Silver-seed gourd	carcmoB0322
CmoCh06G012340	Silver-seed gourd	carcmoB1451