Cp4.1LG03g17800 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g17800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRapid ALkalinization Factor
LocationCp4.1LG03 : 12408206 .. 12408586 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAATCCCACTCTCTTCTTCCTTTTTTCCATCCTTCTTCCACTTGTTTTCCTGCAGACCCATTTCTCATTCTGTGATGCGATTCTTGATCTTAGATCTTTGAAGGGCAGTGAAATCGATGTTATGGCAAAAGGGGTTTGCAATCAGAAGATCGGGGAGTGCCTGACTGAGCCAGAAATGGAATCAGAAGTCAGTAGGAGAGTTCTGATGATGCAGAAGAAGTATATAAGCTATGACACCCTTAGGAGGGACATGGTTCCTTGTTCAAGACCAGGCGTTTCATATTATGAATGCCATCCTGGTCCAGCAAATTCTTATGACAGAGGCTGCGAGGTCATTACCAGATGTGCTAGGGATGTGCACGACATAAACACTTGA

mRNA sequence

ATGCCAAATCCCACTCTCTTCTTCCTTTTTTCCATCCTTCTTCCACTTGTTTTCCTGCAGACCCATTTCTCATTCTGTGATGCGATTCTTGATCTTAGATCTTTGAAGGGCAGTGAAATCGATGTTATGGCAAAAGGGGTTTGCAATCAGAAGATCGGGGAGTGCCTGACTGAGCCAGAAATGGAATCAGAAGTCAGTAGGAGAGTTCTGATGATGCAGAAGAAGTATATAAGCTATGACACCCTTAGGAGGGACATGGTTCCTTGTTCAAGACCAGGCGTTTCATATTATGAATGCCATCCTGGTCCAGCAAATTCTTATGACAGAGGCTGCGAGGTCATTACCAGATGTGCTAGGGATGTGCACGACATAAACACTTGA

Coding sequence (CDS)

ATGCCAAATCCCACTCTCTTCTTCCTTTTTTCCATCCTTCTTCCACTTGTTTTCCTGCAGACCCATTTCTCATTCTGTGATGCGATTCTTGATCTTAGATCTTTGAAGGGCAGTGAAATCGATGTTATGGCAAAAGGGGTTTGCAATCAGAAGATCGGGGAGTGCCTGACTGAGCCAGAAATGGAATCAGAAGTCAGTAGGAGAGTTCTGATGATGCAGAAGAAGTATATAAGCTATGACACCCTTAGGAGGGACATGGTTCCTTGTTCAAGACCAGGCGTTTCATATTATGAATGCCATCCTGGTCCAGCAAATTCTTATGACAGAGGCTGCGAGGTCATTACCAGATGTGCTAGGGATGTGCACGACATAAACACTTGA

Protein sequence

MPNPTLFFLFSILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPEMESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT
Homology
[Close]
BLAST of Cp4.1LG03g17800 vs. Swiss-Prot
Match: RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.5e-27
Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = 1 

Query: 12  ILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPEMESEVSRRVLM 71
           + L L+ LQTH S     + + S+ G EID M     N  IGE   E  M SE+SRRV+M
Sbjct: 8   VYLSLLCLQTHLSI-SVTVPIPSVNG-EIDAMLNR--NGVIGEEEGEEMMPSEISRRVMM 67

Query: 72  MQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 127
           M+K+YISY+TLRRDMVPC +PG SYY C  G AN+Y+RGC VITRCARD +DI T
Sbjct: 68  MRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCARDTNDIKT 118

[Close]
BLAST of Cp4.1LG03g17800 vs. Swiss-Prot
Match: RLF31_ARATH (Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-24
Identity = 65/126 (51.59%), Postives = 78/126 (61.90%), Query Frame = 1 

Query: 1   MPNPTLFFLFSILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPE 60
           M N T   +F+IL  L+              + S  G EID M   + N  IGE   E  
Sbjct: 1   MFNSTALVIFAILFLLISADA--------FPIPSPNG-EIDAML--IRNSIIGE--DEDL 60

Query: 61  MESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARD 120
           M +E+SRRVLM QK+YI Y+TLRRDMVPC +PG SYY+C  G ANSY RGC+ ITRCARD
Sbjct: 61  MPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYSRGCDTITRCARD 113

Query: 121 VHDINT 127
            +DINT
Sbjct: 121 TNDINT 113

[Close]
BLAST of Cp4.1LG03g17800 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-15
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 48  CNQKIGECLTEPE---MESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPG-P 107
           C   I EC+ E E    +S++SRR+L  QKKYISY  +RR+ VPCSR G SYY C  G  
Sbjct: 45  CTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSVPCSRRGASYYNCQRGAQ 104

Query: 108 ANSYDRGCEVITRCAR 120
           AN Y RGC  ITRC R
Sbjct: 105 ANPYSRGCSTITRCRR 119

[Close]
BLAST of Cp4.1LG03g17800 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 46  GVCNQKIGECLTEPE---MESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPG 105
           G C   IGEC+ E E   ++SE +RR+L   KKYISY  L+++ VPCSR G SYY C PG
Sbjct: 39  GGCKGSIGECIAEEEEFELDSESNRRILAT-KKYISYGALQKNSVPCSRRGASYYNCKPG 98

Query: 106 -PANSYDRGCEVITRC 118
             AN Y RGC  ITRC
Sbjct: 99  AQANPYSRGCSAITRC 113

[Close]
BLAST of Cp4.1LG03g17800 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-14
Identity = 51/114 (44.74%), Postives = 63/114 (55.26%), Query Frame = 1 

Query: 12  ILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLT-----EPEMESEVS 71
           + + +  L  HF F  A+    S  G  + + +K  CN  I EC       E EM+SE++
Sbjct: 9   VAIIIAILTVHFLFA-AVTSQSS--GDFVPIESK--CNGTIAECSLSTAEEEFEMDSEIN 68

Query: 72  RRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPG-PANSYDRGCEVITRCAR 120
           RR+L   K YISY  LRR+ VPCSR G SYY C  G  AN Y RGC  ITRC R
Sbjct: 69  RRILATTK-YISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]
BLAST of Cp4.1LG03g17800 vs. TrEMBL
Match: A0A0A0L7V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129640 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.5e-61
Identity = 114/121 (94.21%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 6   LFFLFSILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPEMESEV 65
           LFFLFSI+ PLVFLQTHFSFCDAILDLRS KGSE++VMAKGVCNQKIGECLT+PEMESE+
Sbjct: 7   LFFLFSIIFPLVFLQTHFSFCDAILDLRSFKGSEMEVMAKGVCNQKIGECLTDPEMESEI 66

Query: 66  SRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN 125
           SRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN
Sbjct: 67  SRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN 126

Query: 126 T 127
           T
Sbjct: 127 T 127

[Close]
BLAST of Cp4.1LG03g17800 vs. TrEMBL
Match: M5XU33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013295mg PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 85/129 (65.89%), Postives = 94/129 (72.87%), Query Frame = 1 

Query: 2   PNPTLFFLFSILLPLVFLQTHFSFCDAI--LDLRSLKGSEIDVM--AKGVCNQKIGECLT 61
           PNP L    S+LL    + THFS C+ +   DL SLKGS ID M  A   CNQKIGECLT
Sbjct: 7   PNPMLISCLSLLL----IHTHFSICNGVSAFDLNSLKGSGIDGMVGAGRACNQKIGECLT 66

Query: 62  EPEMESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRC 121
           EPEMESE+SRRVL MQKKYISY+TLRRD+VPC +PG SYY CH   AN Y RGCEVITRC
Sbjct: 67  EPEMESEISRRVLAMQKKYISYETLRRDLVPCGKPGASYYNCHAVAANPYSRGCEVITRC 126

Query: 122 ARDVHDINT 127
           AR  +DI T
Sbjct: 127 ARG-NDIKT 130

[Close]
BLAST of Cp4.1LG03g17800 vs. TrEMBL
Match: A0A067KSY9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01083 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-33
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 1 

Query: 1   MPNPTLFFLFSILLPLVFLQTHFSFCD--AILDLRSLKGSEIDVMAKGVCNQKIGECLTE 60
           M  P L+     +L L+FL THFS C+  ++  L SL+ +EID +    C +KIG+CL E
Sbjct: 1   MSRPKLY-----ILALIFLYTHFSICNGVSVSGLNSLEITEIDAIVSRPCTRKIGDCLEE 60

Query: 61  PEMESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRC 118
            EMESE+SRRVL+MQKKYISY+TL+RDMVPC++PG SYY+CH G AN Y RGCEVITRC
Sbjct: 61  AEMESEISRRVLLMQKKYISYETLKRDMVPCAKPGASYYDCHAGEANPYSRGCEVITRC 114

[Close]
BLAST of Cp4.1LG03g17800 vs. TrEMBL
Match: B9GFJ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32790g PE=4 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 6.3e-33
Identity = 74/124 (59.68%), Postives = 91/124 (73.39%), Query Frame = 1 

Query: 4   PTLFFLFSILLPLVFLQTHFSFC--DAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPEM 63
           PTL +L      L+FL T F+ C  D++  L SLK SEID +    C++KIGEC  E EM
Sbjct: 11  PTLLYL-----SLLFLLTLFTICNADSVSGLNSLKTSEIDAIVSKGCSEKIGECFEESEM 70

Query: 64  ESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDV 123
           ESE+SRRVL+M KKYISY+TLRRD+VPC +PG SYY+C+   A+ Y+RGCEVITRCAR V
Sbjct: 71  ESEISRRVLLMHKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYNRGCEVITRCARSV 129

Query: 124 HDIN 126
            DIN
Sbjct: 131 KDIN 129

[Close]
BLAST of Cp4.1LG03g17800 vs. TrEMBL
Match: A0A061EJW1_THECC (RALFL33, putative OS=Theobroma cacao GN=TCM_020225 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.4e-32
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 1 

Query: 4   PTLFFLFSIL-LPLVFLQTHFSFCDA--ILDL-RSLKGSEIDVMAKGVCNQKIGECLTEP 63
           P L  L +IL L  +F QT    CDA  ILDL  +LK SE+DVM   VCN K+ +CL E 
Sbjct: 2   PILRPLITILSLSFLFFQT----CDAVSILDLNNALKHSEVDVMVPRVCNNKLEDCLEEQ 61

Query: 64  EMESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCAR 123
           EMESE +RRVL+MQ++YISY+TLRRDMVPC++PG SYY+C+ G AN Y+RGCEVITRCAR
Sbjct: 62  EMESESNRRVLVMQRRYISYETLRRDMVPCAKPGASYYDCNAGQANPYNRGCEVITRCAR 121

Query: 124 DVHDINT 127
            + DI T
Sbjct: 122 GIKDIKT 124

[Close]
BLAST of Cp4.1LG03g17800 vs. TAIR10
Match: AT3G23805.1 (AT3G23805.1 ralf-like 24)

HSP 1 Score: 121.3 bits (303), Expect = 4.2e-28
Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = 1 

Query: 12  ILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPEMESEVSRRVLM 71
           + L L+ LQTH S     + + S+ G EID M     N  IGE   E  M SE+SRRV+M
Sbjct: 8   VYLSLLCLQTHLSI-SVTVPIPSVNG-EIDAMLNR--NGVIGEEEGEEMMPSEISRRVMM 67

Query: 72  MQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 127
           M+K+YISY+TLRRDMVPC +PG SYY C  G AN+Y+RGC VITRCARD +DI T
Sbjct: 68  MRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCARDTNDIKT 118

[Close]
BLAST of Cp4.1LG03g17800 vs. TAIR10
Match: AT4G13950.1 (AT4G13950.1 ralf-like 31)

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-25
Identity = 65/126 (51.59%), Postives = 78/126 (61.90%), Query Frame = 1 

Query: 1   MPNPTLFFLFSILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPE 60
           M N T   +F+IL  L+              + S  G EID M   + N  IGE   E  
Sbjct: 1   MFNSTALVIFAILFLLISADA--------FPIPSPNG-EIDAML--IRNSIIGE--DEDL 60

Query: 61  MESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARD 120
           M +E+SRRVLM QK+YI Y+TLRRDMVPC +PG SYY+C  G ANSY RGC+ ITRCARD
Sbjct: 61  MPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYSRGCDTITRCARD 113

Query: 121 VHDINT 127
            +DINT
Sbjct: 121 TNDINT 113

[Close]
BLAST of Cp4.1LG03g17800 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 83.6 bits (205), Expect = 9.7e-17
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 48  CNQKIGECLTEPE---MESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPG-P 107
           C   I EC+ E E    +S++SRR+L  QKKYISY  +RR+ VPCSR G SYY C  G  
Sbjct: 45  CTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSVPCSRRGASYYNCQRGAQ 104

Query: 108 ANSYDRGCEVITRCAR 120
           AN Y RGC  ITRC R
Sbjct: 105 ANPYSRGCSTITRCRR 119

[Close]
BLAST of Cp4.1LG03g17800 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 80.5 bits (197), Expect = 8.2e-16
Identity = 51/114 (44.74%), Postives = 63/114 (55.26%), Query Frame = 1 

Query: 12  ILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLT-----EPEMESEVS 71
           + + +  L  HF F  A+    S  G  + + +K  CN  I EC       E EM+SE++
Sbjct: 9   VAIIIAILTVHFLFA-AVTSQSS--GDFVPIESK--CNGTIAECSLSTAEEEFEMDSEIN 68

Query: 72  RRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPG-PANSYDRGCEVITRCAR 120
           RR+L   K YISY  LRR+ VPCSR G SYY C  G  AN Y RGC  ITRC R
Sbjct: 69  RRILATTK-YISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]
BLAST of Cp4.1LG03g17800 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 77.4 bits (189), Expect = 7.0e-15
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1 

Query: 48  CNQKIGECL--TEPEMESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPG-PA 107
           C+  I EC+   E EM+SE++RR+L   K YISY +L+R+ VPCSR G SYY C  G  A
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILATTK-YISYQSLKRNSVPCSRRGASYYNCQNGAQA 106

Query: 108 NSYDRGCEVITRC 118
           N Y RGC  I RC
Sbjct: 107 NPYSRGCSKIARC 118

[Close]
BLAST of Cp4.1LG03g17800 vs. NCBI nr
Match: gi|659075762|ref|XP_008438316.1| (PREDICTED: protein RALF-like 24 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-61
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 7   FFLFSILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPEMESEVS 66
           FFLFSI+ PLVFLQTHFSFCDAILDLRS KGSE+DVMAKGVCNQKIGECLT+PEMESE+S
Sbjct: 9   FFLFSIIFPLVFLQTHFSFCDAILDLRSFKGSEMDVMAKGVCNQKIGECLTDPEMESEIS 68

Query: 67  RRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 126
           RRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT
Sbjct: 69  RRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 128

[Close]
BLAST of Cp4.1LG03g17800 vs. NCBI nr
Match: gi|778677782|ref|XP_011650863.1| (PREDICTED: protein RALF-like 24 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 3.5e-61
Identity = 114/121 (94.21%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 6   LFFLFSILLPLVFLQTHFSFCDAILDLRSLKGSEIDVMAKGVCNQKIGECLTEPEMESEV 65
           LFFLFSI+ PLVFLQTHFSFCDAILDLRS KGSE++VMAKGVCNQKIGECLT+PEMESE+
Sbjct: 7   LFFLFSIIFPLVFLQTHFSFCDAILDLRSFKGSEMEVMAKGVCNQKIGECLTDPEMESEI 66

Query: 66  SRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN 125
           SRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN
Sbjct: 67  SRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN 126

Query: 126 T 127
           T
Sbjct: 127 T 127

[Close]
BLAST of Cp4.1LG03g17800 vs. NCBI nr
Match: gi|596217112|ref|XP_007223934.1| (hypothetical protein PRUPE_ppa013295mg [Prunus persica])

HSP 1 Score: 160.6 bits (405), Expect = 1.8e-36
Identity = 85/129 (65.89%), Postives = 94/129 (72.87%), Query Frame = 1 

Query: 2   PNPTLFFLFSILLPLVFLQTHFSFCDAI--LDLRSLKGSEIDVM--AKGVCNQKIGECLT 61
           PNP L    S+LL    + THFS C+ +   DL SLKGS ID M  A   CNQKIGECLT
Sbjct: 7   PNPMLISCLSLLL----IHTHFSICNGVSAFDLNSLKGSGIDGMVGAGRACNQKIGECLT 66

Query: 62  EPEMESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRC 121
           EPEMESE+SRRVL MQKKYISY+TLRRD+VPC +PG SYY CH   AN Y RGCEVITRC
Sbjct: 67  EPEMESEISRRVLAMQKKYISYETLRRDLVPCGKPGASYYNCHAVAANPYSRGCEVITRC 126

Query: 122 ARDVHDINT 127
           AR  +DI T
Sbjct: 127 ARG-NDIKT 130

[Close]
BLAST of Cp4.1LG03g17800 vs. NCBI nr
Match: gi|645232307|ref|XP_008222806.1| (PREDICTED: protein RALF-like 24 [Prunus mume])

HSP 1 Score: 158.7 bits (400), Expect = 6.7e-36
Identity = 82/122 (67.21%), Postives = 89/122 (72.95%), Query Frame = 1 

Query: 2   PNPTLFFLFSILLPLVFLQTHFSFCDAI--LDLRSLKGSEIDVM--AKGVCNQKIGECLT 61
           PNP L    S+LL    + THFS C+ +   DL SLKGS ID M  A   CNQKIGECLT
Sbjct: 51  PNPMLISYLSLLL----IHTHFSICNGVSAFDLNSLKGSGIDGMVGAGRACNQKIGECLT 110

Query: 62  EPEMESEVSRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRC 120
           EPEMESE SRRVL MQKKYISY+TLRRD+VPC +PG SYY CH   AN Y RGCEVITRC
Sbjct: 111 EPEMESETSRRVLAMQKKYISYETLRRDLVPCGKPGASYYNCHAVAANPYSRGCEVITRC 168

[Close]
BLAST of Cp4.1LG03g17800 vs. NCBI nr
Match: gi|1009177739|ref|XP_015870138.1| (PREDICTED: protein RALF-like 24 [Ziziphus jujuba])

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-33
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1 

Query: 12  ILLPLVFLQTHFSFCD--AILDLRSLKGSEIDVMAKG-VCNQKIGECLTEPE--MESEVS 71
           + L L F  THFS C   ++LDL+SLK SE+D+M  G VCNQK+ +CLTE E  M+SE +
Sbjct: 12  LCLALFFSLTHFSICSGVSVLDLKSLKNSEVDMMVGGGVCNQKVEKCLTEVEEMMDSETN 71

Query: 72  RRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN 126
           RR+L MQK++ISY+TLRRDM+PC+ PG  YY CHPG AN Y+RGCEVITRCAR ++  N
Sbjct: 72  RRILAMQKRFISYETLRRDMIPCATPGAPYYNCHPGAANPYNRGCEVITRCARGINKNN 130

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g17800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF24_ARATH7.5e-2756.52Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1[more]
RLF31_ARATH3.5e-2451.59Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1[more]
RLF22_ARATH1.7e-1555.26Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1[more]
RALF_TOBAC2.3e-1555.26Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1[more]
RLF33_ARATH1.5e-1444.74Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1[more]
BLAST of Cp4.1LG03g17800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7V8_CUCSA2.5e-6194.21Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129640 PE=4 SV=1[more]
M5XU33_PRUPE1.2e-3665.89Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013295mg PE=4 SV=1[more]
A0A067KSY9_JATCU4.9e-3359.66Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01083 PE=4 SV=1[more]
B9GFJ2_POPTR6.3e-3359.68Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32790g PE=4 SV=2[more]
A0A061EJW1_THECC5.4e-3261.42RALFL33, putative OS=Theobroma cacao GN=TCM_020225 PE=4 SV=1[more]
BLAST of Cp4.1LG03g17800 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23805.14.2e-2856.52 ralf-like 24[more]
AT4G13950.12.0e-2551.59 ralf-like 31[more]
AT3G05490.19.7e-1755.26 ralf-like 22[more]
AT4G15800.18.2e-1644.74 ralf-like 33[more]
AT1G02900.17.0e-1553.42 rapid alkalinization factor 1[more]
BLAST of Cp4.1LG03g17800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075762|ref|XP_008438316.1|2.7e-6195.00PREDICTED: protein RALF-like 24 [Cucumis melo][more]
gi|778677782|ref|XP_011650863.1|3.5e-6194.21PREDICTED: protein RALF-like 24 [Cucumis sativus][more]
gi|596217112|ref|XP_007223934.1|1.8e-3665.89hypothetical protein PRUPE_ppa013295mg [Prunus persica][more]
gi|645232307|ref|XP_008222806.1|6.7e-3667.21PREDICTED: protein RALF-like 24 [Prunus mume][more]
gi|1009177739|ref|XP_015870138.1|2.4e-3360.50PREDICTED: protein RALF-like 24 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009408 response to heat
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g17800.1Cp4.1LG03g17800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 58..119
score: 3.6
NoneNo IPR availablePANTHERPTHR33136FAMILY NOT NAMEDcoord: 1..121
score: 1.8
NoneNo IPR availablePANTHERPTHR33136:SF10PROTEIN RALF-LIKE 24-RELATEDcoord: 1..121
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g17800Cucsa.256690Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g17800CmaCh14G019140Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g17800CmaCh06G011970Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g17800CmoCh06G012340Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g17800CmoCh14G019670Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g17800Cla021396Watermelon (97103) v1cpewmB613
Cp4.1LG03g17800Csa3G129640Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g17800MELO3C006289Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g17800ClCG05G003080Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g17800CSPI03G10560Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g17800Lsi05G018650Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g17800CsaV3_3G010700Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g17800Bhi01G000140Wax gourdcpewgoB0784
Cp4.1LG03g17800CsGy3G010640Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g17800Carg06309Silver-seed gourdcarcpeB1331
Cp4.1LG03g17800Carg14912Silver-seed gourdcarcpeB0884
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g17800Cp4.1LG08g02630Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g17800Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g17800Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g17800Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g17800Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g17800Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g17800Watermelon (Charleston Gray)cpewcgB561
Cp4.1LG03g17800Silver-seed gourdcarcpeB0327
Cp4.1LG03g17800Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g17800Silver-seed gourdcarcpeB1504