Cp4.1LG08g02630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g02630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRapid ALkalinization Factor
LocationCp4.1LG08 : 2669575 .. 2669961 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTCTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATGCCCAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCTTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCATGATATAAACACTTGA

mRNA sequence

ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTCTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATGCCCAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCTTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCATGATATAAACACTTGA

Coding sequence (CDS)

ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTCTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATGCCCAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCTTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCATGATATAAACACTTGA

Protein sequence

MAKPTTLFFLLSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTEPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT
Homology
[Close]
BLAST of Cp4.1LG08g02630 vs. Swiss-Prot
Match: RLF31_ARATH (Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.3e-25
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 51  NQKIGECLTEPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYD 110
           N  IGE   E  M +EISRRVLM QKRYI YETLRRDMVPC +PG SYY+C  G ANSY 
Sbjct: 38  NSIIGE--DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYS 97

Query: 111 RGCEVITRCARDVHDINT 129
           RGC+ ITRCARD +DINT
Sbjct: 98  RGCDTITRCARDTNDINT 113

[Close]
BLAST of Cp4.1LG08g02630 vs. Swiss-Prot
Match: RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-24
Identity = 65/118 (55.08%), Postives = 79/118 (66.95%), Query Frame = 1 

Query: 11  LSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTEPEMESEISRR 70
           L+++ L L  LQT        + + S+ G +ID M     N  IGE   E  M SEISRR
Sbjct: 5   LALVYLSLLCLQTHLSI-SVTVPIPSVNG-EIDAMLNR--NGVIGEEEGEEMMPSEISRR 64

Query: 71  VLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 129
           V+MM+K+YISYETLRRDMVPC +PG SYY C  G AN+Y+RGC VITRCARD +DI T
Sbjct: 65  VMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCARDTNDIKT 118

[Close]
BLAST of Cp4.1LG08g02630 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 48  GVCNQKIGECLTEPE---MESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPG 107
           G C   IGEC+ E E   ++SE +RR+L   K+YISY  L+++ VPCSR G SYY C PG
Sbjct: 39  GGCKGSIGECIAEEEEFELDSESNRRILAT-KKYISYGALQKNSVPCSRRGASYYNCKPG 98

Query: 108 -PANSYDRGCEVITRC 120
             AN Y RGC  ITRC
Sbjct: 99  AQANPYSRGCSAITRC 113

[Close]
BLAST of Cp4.1LG08g02630 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-14
Identity = 46/86 (53.49%), Postives = 52/86 (60.47%), Query Frame = 1 

Query: 43  DLMP-KGVCNQKIGECLT-----EPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGV 102
           D +P +  CN  I EC       E EM+SEI+RR+L   K YISY  LRR+ VPCSR G 
Sbjct: 32  DFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPCSRRGA 91

Query: 103 SYYECHPG-PANSYDRGCEVITRCAR 122
           SYY C  G  AN Y RGC  ITRC R
Sbjct: 92  SYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]
BLAST of Cp4.1LG08g02630 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-14
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = 1 

Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTE 60
           M     ++ +++IL + ++ +++   F D++  +R+   +         C   I EC+ E
Sbjct: 1   MTNTRAIYAVIAILAIVISAVESTGDFGDSLDFVRAGSSSLFS-----GCTGSIAECIAE 60

Query: 61  PE---MESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPG-PANSYDRGCEVI 120
            E    +S+ISRR+L  QK+YISY  +RR+ VPCSR G SYY C  G  AN Y RGC  I
Sbjct: 61  EEEMEFDSDISRRILA-QKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTI 119

Query: 121 TRCAR 122
           TRC R
Sbjct: 121 TRCRR 119

[Close]
BLAST of Cp4.1LG08g02630 vs. TrEMBL
Match: A0A0A0L7V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129640 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-55
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1 

Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTE 60
           MAK   LFFL SI+  PL FLQT F FCDA+LDLRS KG+++++M KGVCNQKIGECLT+
Sbjct: 1   MAKSLFLFFLFSIIF-PLVFLQTHFSFCDAILDLRSFKGSEMEVMAKGVCNQKIGECLTD 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120
           PEMESEISRRVLMMQK+YISY+TLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA
Sbjct: 61  PEMESEISRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120

Query: 121 RDVHDINT 129
           RDVHDINT
Sbjct: 121 RDVHDINT 127

[Close]
BLAST of Cp4.1LG08g02630 vs. TrEMBL
Match: B9GFJ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32790g PE=4 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 1 

Query: 12  SILLLPLTFLQTLFPFC--DAVLDLRSLKGNQIDLMPKGVCNQKIGECLTEPEMESEISR 71
           ++L L L FL TLF  C  D+V  L SLK ++ID +    C++KIGEC  E EMESEISR
Sbjct: 12  TLLYLSLLFLLTLFTICNADSVSGLNSLKTSEIDAIVSKGCSEKIGECFEESEMESEISR 71

Query: 72  RVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN 128
           RVL+M K+YISYETLRRD+VPC +PG SYY+C+   A+ Y+RGCEVITRCAR V DIN
Sbjct: 72  RVLLMHKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYNRGCEVITRCARSVKDIN 129

[Close]
BLAST of Cp4.1LG08g02630 vs. TrEMBL
Match: M5XU33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013295mg PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 79/120 (65.83%), Postives = 86/120 (71.67%), Query Frame = 1 

Query: 13  ILLLPLTFLQTLFPFCDAV--LDLRSLKGNQIDLMPKG--VCNQKIGECLTEPEMESEIS 72
           I  L L  + T F  C+ V   DL SLKG+ ID M      CNQKIGECLTEPEMESEIS
Sbjct: 12  ISCLSLLLIHTHFSICNGVSAFDLNSLKGSGIDGMVGAGRACNQKIGECLTEPEMESEIS 71

Query: 73  RRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 129
           RRVL MQK+YISYETLRRD+VPC +PG SYY CH   AN Y RGCEVITRCAR  +DI T
Sbjct: 72  RRVLAMQKKYISYETLRRDLVPCGKPGASYYNCHAVAANPYSRGCEVITRCARG-NDIKT 130

[Close]
BLAST of Cp4.1LG08g02630 vs. TrEMBL
Match: A0A061EJW1_THECC (RALFL33, putative OS=Theobroma cacao GN=TCM_020225 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.2e-32
Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 1 

Query: 10  LLSILLLPLTFLQTLFPFCDAV--LDLRS-LKGNQIDLMPKGVCNQKIGECLTEPEMESE 69
           L++IL L   F QT    CDAV  LDL + LK +++D+M   VCN K+ +CL E EMESE
Sbjct: 7   LITILSLSFLFFQT----CDAVSILDLNNALKHSEVDVMVPRVCNNKLEDCLEEQEMESE 66

Query: 70  ISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDI 129
            +RRVL+MQ+RYISYETLRRDMVPC++PG SYY+C+ G AN Y+RGCEVITRCAR + DI
Sbjct: 67  SNRRVLVMQRRYISYETLRRDMVPCAKPGASYYDCNAGQANPYNRGCEVITRCARGIKDI 124

[Close]
BLAST of Cp4.1LG08g02630 vs. TrEMBL
Match: B9S9Y5_RICCO (RALFL33, putative OS=Ricinus communis GN=RCOM_0523490 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 70/119 (58.82%), Postives = 86/119 (72.27%), Query Frame = 1 

Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTE 60
           M +PT  F LL+ LLL      TLF  C+ V  +   K  ++D + + VC +KIG+C  E
Sbjct: 1   MLRPT--FCLLAFLLL-----HTLFTICNGV-SVSGFKNTEVDAIMRRVCTKKIGDCFEE 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRC 120
           PEMESEISRRVL+MQK+YISYETL+RDMVPC +PG SYY+CH G AN Y RGCE+ITRC
Sbjct: 61  PEMESEISRRVLVMQKKYISYETLKRDMVPCDKPGASYYDCHAGEANPYSRGCEMITRC 111

[Close]
BLAST of Cp4.1LG08g02630 vs. TAIR10
Match: AT4G13950.1 (AT4G13950.1 ralf-like 31)

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-26
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 51  NQKIGECLTEPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYD 110
           N  IGE   E  M +EISRRVLM QKRYI YETLRRDMVPC +PG SYY+C  G ANSY 
Sbjct: 38  NSIIGE--DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYS 97

Query: 111 RGCEVITRCARDVHDINT 129
           RGC+ ITRCARD +DINT
Sbjct: 98  RGCDTITRCARDTNDINT 113

[Close]
BLAST of Cp4.1LG08g02630 vs. TAIR10
Match: AT3G23805.1 (AT3G23805.1 ralf-like 24)

HSP 1 Score: 113.6 bits (283), Expect = 8.9e-26
Identity = 65/118 (55.08%), Postives = 79/118 (66.95%), Query Frame = 1 

Query: 11  LSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTEPEMESEISRR 70
           L+++ L L  LQT        + + S+ G +ID M     N  IGE   E  M SEISRR
Sbjct: 5   LALVYLSLLCLQTHLSI-SVTVPIPSVNG-EIDAMLNR--NGVIGEEEGEEMMPSEISRR 64

Query: 71  VLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 129
           V+MM+K+YISYETLRRDMVPC +PG SYY C  G AN+Y+RGC VITRCARD +DI T
Sbjct: 65  VMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCARDTNDIKT 118

[Close]
BLAST of Cp4.1LG08g02630 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 46/86 (53.49%), Postives = 52/86 (60.47%), Query Frame = 1 

Query: 43  DLMP-KGVCNQKIGECLT-----EPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGV 102
           D +P +  CN  I EC       E EM+SEI+RR+L   K YISY  LRR+ VPCSR G 
Sbjct: 32  DFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPCSRRGA 91

Query: 103 SYYECHPG-PANSYDRGCEVITRCAR 122
           SYY C  G  AN Y RGC  ITRC R
Sbjct: 92  SYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]
BLAST of Cp4.1LG08g02630 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-15
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = 1 

Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTE 60
           M     ++ +++IL + ++ +++   F D++  +R+   +         C   I EC+ E
Sbjct: 1   MTNTRAIYAVIAILAIVISAVESTGDFGDSLDFVRAGSSSLFS-----GCTGSIAECIAE 60

Query: 61  PE---MESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPG-PANSYDRGCEVI 120
            E    +S+ISRR+L  QK+YISY  +RR+ VPCSR G SYY C  G  AN Y RGC  I
Sbjct: 61  EEEMEFDSDISRRILA-QKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTI 119

Query: 121 TRCAR 122
           TRC R
Sbjct: 121 TRCRR 119

[Close]
BLAST of Cp4.1LG08g02630 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 55  GECLTEPEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPG-PANSYDRGC 114
           GE   E EM+SEI+RR+L   +RYISY  LRR+ +PCSR G SYY C  G  AN Y RGC
Sbjct: 71  GEMGEEFEMDSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGC 130

Query: 115 EVITRCAR 122
             ITRC R
Sbjct: 131 SAITRCRR 137

[Close]
BLAST of Cp4.1LG08g02630 vs. NCBI nr
Match: gi|659075762|ref|XP_008438316.1| (PREDICTED: protein RALF-like 24 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 1 

Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTE 60
           MAK   LFF L  ++ PL FLQT F FCDA+LDLRS KG+++D+M KGVCNQKIGECLT+
Sbjct: 1   MAKSLFLFFFLFSIIFPLVFLQTHFSFCDAILDLRSFKGSEMDVMAKGVCNQKIGECLTD 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120
           PEMESEISRRVLMMQK+YISY+TLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA
Sbjct: 61  PEMESEISRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120

Query: 121 RDVHDINT 129
           RDVHDINT
Sbjct: 121 RDVHDINT 128

[Close]
BLAST of Cp4.1LG08g02630 vs. NCBI nr
Match: gi|778677782|ref|XP_011650863.1| (PREDICTED: protein RALF-like 24 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.9e-55
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1 

Query: 1   MAKPTTLFFLLSILLLPLTFLQTLFPFCDAVLDLRSLKGNQIDLMPKGVCNQKIGECLTE 60
           MAK   LFFL SI+  PL FLQT F FCDA+LDLRS KG+++++M KGVCNQKIGECLT+
Sbjct: 1   MAKSLFLFFLFSIIF-PLVFLQTHFSFCDAILDLRSFKGSEMEVMAKGVCNQKIGECLTD 60

Query: 61  PEMESEISRRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120
           PEMESEISRRVLMMQK+YISY+TLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA
Sbjct: 61  PEMESEISRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCA 120

Query: 121 RDVHDINT 129
           RDVHDINT
Sbjct: 121 RDVHDINT 127

[Close]
BLAST of Cp4.1LG08g02630 vs. NCBI nr
Match: gi|566152293|ref|XP_002298677.2| (hypothetical protein POPTR_0001s32790g [Populus trichocarpa])

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 1 

Query: 12  SILLLPLTFLQTLFPFC--DAVLDLRSLKGNQIDLMPKGVCNQKIGECLTEPEMESEISR 71
           ++L L L FL TLF  C  D+V  L SLK ++ID +    C++KIGEC  E EMESEISR
Sbjct: 12  TLLYLSLLFLLTLFTICNADSVSGLNSLKTSEIDAIVSKGCSEKIGECFEESEMESEISR 71

Query: 72  RVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDIN 128
           RVL+M K+YISYETLRRD+VPC +PG SYY+C+   A+ Y+RGCEVITRCAR V DIN
Sbjct: 72  RVLLMHKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYNRGCEVITRCARSVKDIN 129

[Close]
BLAST of Cp4.1LG08g02630 vs. NCBI nr
Match: gi|596217112|ref|XP_007223934.1| (hypothetical protein PRUPE_ppa013295mg [Prunus persica])

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-32
Identity = 79/120 (65.83%), Postives = 86/120 (71.67%), Query Frame = 1 

Query: 13  ILLLPLTFLQTLFPFCDAV--LDLRSLKGNQIDLMPKG--VCNQKIGECLTEPEMESEIS 72
           I  L L  + T F  C+ V   DL SLKG+ ID M      CNQKIGECLTEPEMESEIS
Sbjct: 12  ISCLSLLLIHTHFSICNGVSAFDLNSLKGSGIDGMVGAGRACNQKIGECLTEPEMESEIS 71

Query: 73  RRVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 129
           RRVL MQK+YISYETLRRD+VPC +PG SYY CH   AN Y RGCEVITRCAR  +DI T
Sbjct: 72  RRVLAMQKKYISYETLRRDLVPCGKPGASYYNCHAVAANPYSRGCEVITRCARG-NDIKT 130

[Close]
BLAST of Cp4.1LG08g02630 vs. NCBI nr
Match: gi|743919221|ref|XP_011003629.1| (PREDICTED: protein RALF-like 24 [Populus euphratica])

HSP 1 Score: 146.0 bits (367), Expect = 4.6e-32
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 1 

Query: 12  SILLLPLTFLQTLFPFC--DAVLDLRSLKGNQIDLMPKGVCNQKIGECLTEPEMESEISR 71
           ++L L L FL  LF  C  D+V  L SLK ++ID++    C++KIGEC  EPEMESEISR
Sbjct: 12  TLLYLSLLFLLALFTICNADSVSGLNSLKTSEIDVIVGKGCSEKIGECFEEPEMESEISR 71

Query: 72  RVLMMQKRYISYETLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDI 127
           R L+MQK+YISYETLRRD+VPC +PG SYY+C+   A+ Y RGCEVITRCAR + DI
Sbjct: 72  RALLMQKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYSRGCEVITRCARSIKDI 128

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g02630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF31_ARATH9.3e-2570.51Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1[more]
RLF24_ARATH1.6e-2455.08Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1[more]
RALF_TOBAC6.7e-1553.95Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1[more]
RLF33_ARATH1.9e-1453.49Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1[more]
RLF22_ARATH3.3e-1438.40Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1[more]
BLAST of Cp4.1LG08g02630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7V8_CUCSA2.7e-5583.59Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129640 PE=4 SV=1[more]
B9GFJ2_POPTR1.4e-3261.86Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32790g PE=4 SV=2[more]
M5XU33_PRUPE1.9e-3265.83Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013295mg PE=4 SV=1[more]
A0A061EJW1_THECC3.2e-3261.48RALFL33, putative OS=Theobroma cacao GN=TCM_020225 PE=4 SV=1[more]
B9S9Y5_RICCO1.3e-3058.82RALFL33, putative OS=Ricinus communis GN=RCOM_0523490 PE=4 SV=1[more]
BLAST of Cp4.1LG08g02630 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13950.15.2e-2670.51 ralf-like 31[more]
AT3G23805.18.9e-2655.08 ralf-like 24[more]
AT4G15800.11.1e-1553.49 ralf-like 33[more]
AT3G05490.11.9e-1538.40 ralf-like 22[more]
AT3G16570.14.1e-1558.82 rapid alkalinization factor 23[more]
BLAST of Cp4.1LG08g02630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075762|ref|XP_008438316.1|1.0e-5582.81PREDICTED: protein RALF-like 24 [Cucumis melo][more]
gi|778677782|ref|XP_011650863.1|3.9e-5583.59PREDICTED: protein RALF-like 24 [Cucumis sativus][more]
gi|566152293|ref|XP_002298677.2|2.1e-3261.86hypothetical protein POPTR_0001s32790g [Populus trichocarpa][more]
gi|596217112|ref|XP_007223934.1|2.7e-3265.83hypothetical protein PRUPE_ppa013295mg [Prunus persica][more]
gi|743919221|ref|XP_011003629.1|4.6e-3260.68PREDICTED: protein RALF-like 24 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009408 response to heat
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g02630.1Cp4.1LG08g02630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 60..121
score: 3.4
NoneNo IPR availablePANTHERPTHR33136FAMILY NOT NAMEDcoord: 1..123
score: 4.0
NoneNo IPR availablePANTHERPTHR33136:SF10PROTEIN RALF-LIKE 24-RELATEDcoord: 1..123
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g02630Cucsa.256690Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g02630CmaCh14G019140Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g02630CmaCh06G011970Cucurbita maxima (Rimu)cmacpeB854
Cp4.1LG08g02630CmoCh06G012340Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g02630CmoCh14G019670Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g02630Cla021396Watermelon (97103) v1cpewmB845
Cp4.1LG08g02630Csa3G129640Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g02630MELO3C006289Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g02630ClCG05G003080Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g02630CSPI03G10560Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g02630Lsi05G018650Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g02630CsaV3_3G010700Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g02630Bhi01G000140Wax gourdcpewgoB1111
Cp4.1LG08g02630CsGy3G010640Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g02630Carg06309Silver-seed gourdcarcpeB1333
Cp4.1LG08g02630Carg14912Silver-seed gourdcarcpeB0885
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g02630Cp4.1LG03g17800Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g02630Silver-seed gourdcarcpeB0329
Cp4.1LG08g02630Silver-seed gourdcarcpeB1507
Cp4.1LG08g02630Cucumber (Chinese Long) v3cpecucB1046
Cp4.1LG08g02630Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g02630Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g02630Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g02630Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g02630Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g02630Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g02630Watermelon (97103) v1cpewmB853
Cp4.1LG08g02630Melon (DHL92) v3.5.1cpemeB804
Cp4.1LG08g02630Cucumber (Gy14) v2cgybcpeB279
Cp4.1LG08g02630Melon (DHL92) v3.6.1cpemedB951