CmoCh06G012340.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTGTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATACCAAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCCTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCACGATGTAAAGACTTGA ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTGTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATACCAAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCCTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCACGATGTAAAGACTTGA ATGGCAAAACCCACCACTCTGTTCTTCCTTCTTTCCATCCTCCTCCTTCCACTCACTTTCCTTCAAACCCTTTTCCCCTTGTGCGATGCTGTTCTTGATCTCAGATCTTTGAAGGGCAACCAAATCGATTTAATACCAAAAGGGGTTTGCAATCAGAAGATCGGAGAGTGCCTAACAGAGCCAGAAATGGAATCGGAGATCAGTAGGCGAGTGTTGATGATGCAGAAGAGGTATATAAGCTATGAAACTCTTAGAAGGGATATGGTTCCTTGTTCTAGACCAGGGGTTTCTTATTATGAATGCCATCCTGGTCCGGCGAATTCGTATGATCGAGGGTGCGAGGTTATTACTAGATGTGCTAGAGATGTGCACGATGTAAAGACTTGA
BLAST of CmoCh06G012340.1 vs. Swiss-Prot
Match: RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 9.3e-25 Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. Swiss-Prot
Match: RLF31_ARATH (Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 4.6e-24 Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15 Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15 Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14 Identity = 46/86 (53.49%), Postives = 52/86 (60.47%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TrEMBL
Match: A0A0A0L7V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129640 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 2.5e-53 Identity = 103/128 (80.47%), Postives = 115/128 (89.84%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TrEMBL
Match: M5XU33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013295mg PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 3.8e-33 Identity = 79/120 (65.83%), Postives = 90/120 (75.00%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TrEMBL
Match: B9GFJ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32790g PE=4 SV=2) HSP 1 Score: 146.0 bits (367), Expect = 3.2e-32 Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TrEMBL
Match: A0A061EJW1_THECC (RALFL33, putative OS=Theobroma cacao GN=TCM_020225 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 3.2e-32 Identity = 74/122 (60.66%), Postives = 94/122 (77.05%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TrEMBL
Match: B9S9Y5_RICCO (RALFL33, putative OS=Ricinus communis GN=RCOM_0523490 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 4.6e-31 Identity = 71/119 (59.66%), Postives = 87/119 (73.11%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TAIR10
Match: AT3G23805.1 (AT3G23805.1 ralf-like 24) HSP 1 Score: 114.4 bits (285), Expect = 5.2e-26 Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TAIR10
Match: AT4G13950.1 (AT4G13950.1 ralf-like 31) HSP 1 Score: 112.1 bits (279), Expect = 2.6e-25 Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22) HSP 1 Score: 84.0 bits (206), Expect = 7.6e-17 Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33) HSP 1 Score: 80.9 bits (198), Expect = 6.4e-16 Identity = 46/86 (53.49%), Postives = 52/86 (60.47%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23) HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15 Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. NCBI nr
Match: gi|659075762|ref|XP_008438316.1| (PREDICTED: protein RALF-like 24 [Cucumis melo]) HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53 Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. NCBI nr
Match: gi|778677782|ref|XP_011650863.1| (PREDICTED: protein RALF-like 24 [Cucumis sativus]) HSP 1 Score: 216.1 bits (549), Expect = 3.6e-53 Identity = 103/128 (80.47%), Postives = 115/128 (89.84%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. NCBI nr
Match: gi|596217112|ref|XP_007223934.1| (hypothetical protein PRUPE_ppa013295mg [Prunus persica]) HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33 Identity = 79/120 (65.83%), Postives = 90/120 (75.00%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. NCBI nr
Match: gi|743919221|ref|XP_011003629.1| (PREDICTED: protein RALF-like 24 [Populus euphratica]) HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33 Identity = 72/118 (61.02%), Postives = 90/118 (76.27%), Query Frame = 1
BLAST of CmoCh06G012340.1 vs. NCBI nr
Match: gi|566152293|ref|XP_002298677.2| (hypothetical protein POPTR_0001s32790g [Populus trichocarpa]) HSP 1 Score: 146.0 bits (367), Expect = 4.6e-32 Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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