CmoCh06G009640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(ERF transcription factor 09) (Ethylene response factor 10)
Location	Cmo_Chr06 : 7555782 .. 7556297 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGTAACAGCAATTGCTCACAAGGGTCGTCGTCGTCGGAGGTGTTTCTGTTGGAGTGGATTCGGCGACATCTTTTGGAGGACGAGTTGGATTTGGTTGGGGGATTAGGGAAAAATACTCCGAGTTTGGCGAGTAGTGATGGGGTTACGGATATCGAGGCCCCTGGGAAGGGGAGTTCGATAAGAGGGCTGCAGTTCAGAGGAGTGAGGAGGAGGCCATGGGGGAAGTACGCAGCAGAGATCAGAGACCCCAATAGAAAAGGGGCTCGCATATGGCTGGGGACATACCAGACCGCTGAAGAGGCTGCTTTGGCTTACGATCGAGCTGCTTTTCAAATGCGGGGAGCCAAGGCCAAGCTCAACTTTCCTCACATGATTGGTTCCGCGGAGGCGCTGATTGGGATAGGCTGCTGTTACCCTAAGCGCGCTTCCCCTGATTCCCCTCCGCCCCTGTTCAGCGTCAAGCGCCCTAGAACTGACTCGCCCTCAATGCCACGATGTTCAACTTCATAA

mRNA sequence

ATGTCGAGTAACAGCAATTGCTCACAAGGGTCGTCGTCGTCGGAGGTGTTTCTGTTGGAGTGGATTCGGCGACATCTTTTGGAGGACGAGTTGGATTTGGTTGGGGGATTAGGGAAAAATACTCCGAGTTTGGCGAGTAGTGATGGGGTTACGGATATCGAGGCCCCTGGGAAGGGGAGTTCGATAAGAGGGCTGCAGTTCAGAGGAGTGAGGAGGAGGCCATGGGGGAAGTACGCAGCAGAGATCAGAGACCCCAATAGAAAAGGGGCTCGCATATGGCTGGGGACATACCAGACCGCTGAAGAGGCTGCTTTGGCTTACGATCGAGCTGCTTTTCAAATGCGGGGAGCCAAGGCCAAGCTCAACTTTCCTCACATGATTGGTTCCGCGGAGGCGCTGATTGGGATAGGCTGCTGTTACCCTAAGCGCGCTTCCCCTGATTCCCCTCCGCCCCTGTTCAGCGTCAAGCGCCCTAGAACTGACTCGCCCTCAATGCCACGATGTTCAACTTCATAA

Coding sequence (CDS)

ATGTCGAGTAACAGCAATTGCTCACAAGGGTCGTCGTCGTCGGAGGTGTTTCTGTTGGAGTGGATTCGGCGACATCTTTTGGAGGACGAGTTGGATTTGGTTGGGGGATTAGGGAAAAATACTCCGAGTTTGGCGAGTAGTGATGGGGTTACGGATATCGAGGCCCCTGGGAAGGGGAGTTCGATAAGAGGGCTGCAGTTCAGAGGAGTGAGGAGGAGGCCATGGGGGAAGTACGCAGCAGAGATCAGAGACCCCAATAGAAAAGGGGCTCGCATATGGCTGGGGACATACCAGACCGCTGAAGAGGCTGCTTTGGCTTACGATCGAGCTGCTTTTCAAATGCGGGGAGCCAAGGCCAAGCTCAACTTTCCTCACATGATTGGTTCCGCGGAGGCGCTGATTGGGATAGGCTGCTGTTACCCTAAGCGCGCTTCCCCTGATTCCCCTCCGCCCCTGTTCAGCGTCAAGCGCCCTAGAACTGACTCGCCCTCAATGCCACGATGTTCAACTTCATAA

Homology

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BLAST of CmoCh06G009640 vs. Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-27
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 63  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 122
           +G+Q+RGVRRRPWGK+AAEIRDP + GAR+WLGTY+T E+AA+AYDRAAFQ+RG+KAKLN
Sbjct: 88  KGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLN 147

Query: 123 FPHMIGSAEALIGIGCCY------PKRASPD 148
           FPH+IGS        C Y      P+R SP+
Sbjct: 148 FPHLIGS--------CKYEPVRIRPRRRSPE 170

[Close]

BLAST of CmoCh06G009640 vs. Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-24
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 63  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 122
           RG  +RGVRRRPWGK+AAEIRDP + GAR+WLGTY+T EEAA+AYD+AA++MRG+KA LN
Sbjct: 101 RGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLN 160

Query: 123 FPHMIGSAEALIGIGCCYPKRASPD 148
           FPH IG  E    +     +RASP+
Sbjct: 161 FPHRIGLNEP-EPVRVTAKRRASPE 184

[Close]

BLAST of CmoCh06G009640 vs. Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-24
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 63  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 122
           +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGTY+TAEEAALAYD+AA++MRG+KA LN
Sbjct: 95  KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLN 154

Query: 123 FPHMIGSAE 132
           FPH IG  E
Sbjct: 155 FPHRIGLNE 163

[Close]

BLAST of CmoCh06G009640 vs. Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-24
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 63  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 122
           +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGTY+TAEEAALAYD+AA++MRG+KA LN
Sbjct: 99  KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLN 158

Query: 123 FPHMIGSAE 132
           FPH IG  E
Sbjct: 159 FPHRIGLNE 167

[Close]

BLAST of CmoCh06G009640 vs. Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-23
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 1


Query: 15  EVFLLEWIRRHLLEDELDLVGGLGKNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRP 74
           + F + W   +L  +E+ L     +     A S  V+           +G  +RGVR+RP
Sbjct: 58  DAFSIGWTPSNLTSEEVKLEP---REEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRP 117

Query: 75  WGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGSAE 132
           WGK+AAEIRDP + GAR+WLGTY++AEEAALAY +AAF+MRG KA LNFPH IG  E
Sbjct: 118 WGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNE 171

[Close]

BLAST of CmoCh06G009640 vs. TrEMBL
Match: A0A0A0L893_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116730 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.8e-31
Identity = 84/153 (54.90%), Postives = 98/153 (64.05%), Query Frame = 1


Query: 1   MSSNSNCSQGSSSSEVFLLEWIRRHLLEDEL-------DLVGGL---------------- 60
           M S+S+ S   SSS++F LE IRRHLLED+L       ++  G+                
Sbjct: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60

Query: 61  -GKNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGT 120
              N     SS  + D          RGLQFRGVRRRPWGKYAAEIRDP++KGARIWLGT
Sbjct: 61  NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120

Query: 121 YQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 130
           Y TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 153

[Close]

BLAST of CmoCh06G009640 vs. TrEMBL
Match: W9QSR5_9ROSA (Ethylene-responsive transcription factor 13 OS=Morus notabilis GN=L484_021851 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-30
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 12  SSSEVFLLEWIRRHLLEDE-LDLVGGLGKNTPSLASSDGVTDIEAPGKGSSIR-----GL 71
           +S+++ LLE +R+HLL+D+ ++       N   +  +  +T IE   +G+  R     G+
Sbjct: 8   NSADMALLESVRQHLLDDDCVNPPATFFANVAPVREATRMTGIEQYQEGARERHAPSGGV 67

Query: 72  QFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPH 131
            FRGVRRRPWGKYAAEIRDP + GAR+WLGTY+T E+AALAYDRAAF+MRG+KAKLNFPH
Sbjct: 68  HFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETQEDAALAYDRAAFKMRGSKAKLNFPH 127

Query: 132 MIGSAEALIGIGCCYPKRASPDS 149
           +IGS+  L  +    PKR SP++
Sbjct: 128 LIGSSHEL-ELARVTPKRRSPET 149

[Close]

BLAST of CmoCh06G009640 vs. TrEMBL
Match: M4EV32_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-29
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1


Query: 18  LLEWIRRHLLEDELDLVGGLGKNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGK 77
           +L+ IRRHLLED+ + +           SS    D+E+    +S RG  F+GVRRRPWGK
Sbjct: 13  VLDSIRRHLLEDDSESLSSF--------SSSSSPDLES----TSRRGGNFKGVRRRPWGK 72

Query: 78  YAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIG 129
           YAAEIRDPN+ GARIWLGTY+TAEEAA AYDRAAF++RGAKAKLNFPH+IG
Sbjct: 73  YAAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIG 111

[Close]

BLAST of CmoCh06G009640 vs. TrEMBL
Match: R0F2S3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10005868mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-29
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 1


Query: 18  LLEWIRRHLLE-DELDLVGGLGKNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRPWG 77
           +L+WIRR LLE DE+DL       + S    +  +   +  + S  RG  ++GVRRRPWG
Sbjct: 14  VLDWIRRQLLEEDEIDLTA-----SRSPVEEEDSSSSSSSSELSRSRGGNYKGVRRRPWG 73

Query: 78  KYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIG 129
           KYAAEIRDPN+ GAR+WLGTY+TAEEAA+AYD+AAF+MRG+KAKLNFPH+IG
Sbjct: 74  KYAAEIRDPNKNGARLWLGTYETAEEAAVAYDKAAFKMRGSKAKLNFPHLIG 120

[Close]

BLAST of CmoCh06G009640 vs. TrEMBL
Match: A0A078HJN1_BRANA (BnaCnng09130D protein OS=Brassica napus GN=BnaCnng09130D PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.9e-29
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 1


Query: 18  LLEWIRRHLLEDELDLVGGLGKNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGK 77
           +L+ IRRHLLED+ + +           SS    D+E+  +    RG  F+GVRRRPWGK
Sbjct: 13  VLDSIRRHLLEDDSESLSSF--------SSSSSPDLESTRR----RGGNFKGVRRRPWGK 72

Query: 78  YAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIG 129
           YAAEIRDPN+ GARIWLGTY+TAEEAA AYDRAAF++RGAKAKLNFPH+IG
Sbjct: 73  YAAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIG 111

[Close]

BLAST of CmoCh06G009640 vs. TAIR10
Match: AT2G44840.1 (AT2G44840.1 ethylene-responsive element binding factor 13)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-28
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 63  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 122
           +G+Q+RGVRRRPWGK+AAEIRDP + GAR+WLGTY+T E+AA+AYDRAAFQ+RG+KAKLN
Sbjct: 88  KGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLN 147

Query: 123 FPHMIGSAEALIGIGCCY------PKRASPD 148
           FPH+IGS        C Y      P+R SP+
Sbjct: 148 FPHLIGS--------CKYEPVRIRPRRRSPE 170

[Close]

BLAST of CmoCh06G009640 vs. TAIR10
Match: AT4G17500.1 (AT4G17500.1 ethylene responsive element binding factor 1)

HSP 1 Score: 107.8 bits (268), Expect = 6.5e-24
Identity = 47/72 (65.28%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 60  SSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKA 119
           ++ +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGT++TAE+AALAYDRAAF+MRG++A
Sbjct: 141 TAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA 200

Query: 120 KLNFPHMIGSAE 132
            LNFP  + S E
Sbjct: 201 LLNFPLRVNSGE 212

[Close]

BLAST of CmoCh06G009640 vs. TAIR10
Match: AT5G61600.1 (AT5G61600.1 ethylene response factor 104)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-23
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 67  FRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHM 126
           +RGVRRRPWGKYAAEIRDPN+KG RIWLGTY TA EA  AYD+AAFQ+RG KA LNFP  
Sbjct: 88  YRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLD 147

Query: 127 IG------SAEALIGIGCCYPKRASPDSPP 151
           +       S E +IG+G    ++    SPP
Sbjct: 148 VRVTSETCSGEGVIGLG---KRKRDKGSPP 174

[Close]

BLAST of CmoCh06G009640 vs. TAIR10
Match: AT5G47220.1 (AT5G47220.1 ethylene responsive element binding factor 2)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-22
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 1


Query: 56  PGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMR 115
           P   ++++   +RGVR+RPWGK+AAEIRDP + GAR+WLGT++TAE+AALAYD AAF+MR
Sbjct: 106 PVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMR 165

Query: 116 GAKAKLNFPHMIGSAE 132
           G++A LNFP  + S E
Sbjct: 166 GSRALLNFPLRVNSGE 181

[Close]

BLAST of CmoCh06G009640 vs. TAIR10
Match: AT5G51190.1 (AT5G51190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-22
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 67  FRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHM 126
           +RGVRRRPWGKYAAEIRDPN+KG R+WLGT+ TA EAA  YD+AAF++RG+KA LNFP  
Sbjct: 72  YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131

Query: 127 IGSAEAL 134
            G  E L
Sbjct: 132 AGKHEDL 138

[Close]

BLAST of CmoCh06G009640 vs. NCBI nr
Match: gi|659077725|ref|XP_008439350.1| (PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-33
Identity = 85/151 (56.29%), Postives = 101/151 (66.89%), Query Frame = 1


Query: 2   SSNSNCSQGSSSSEVFLLEWIRRHLLEDEL-------DLVGGL----------------G 61
           SS+S+ S   SSS++FLLE IRRHLLED+L       ++  G+                 
Sbjct: 4   SSSSSSSLEGSSSDLFLLEQIRRHLLEDDLGKGSTNNNVEDGIIRYDISCSGAGWEMSNN 63

Query: 62  KNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQ 121
            N   +     +   + P + S  RGLQFRGVRRRPWGKYAAEIRDP+RKGARIWLGTY 
Sbjct: 64  NNNNMVDQMSSIIIRDNPEEKSRPRGLQFRGVRRRPWGKYAAEIRDPSRKGARIWLGTYH 123

Query: 122 TAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 130
           TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 124 TAQDAALAYDRAAFQMRGAKAKLNFPHIISS 154

[Close]

BLAST of CmoCh06G009640 vs. NCBI nr
Match: gi|449432982|ref|XP_004134277.1| (PREDICTED: ethylene-responsive transcription factor 1 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 4.0e-31
Identity = 84/153 (54.90%), Postives = 98/153 (64.05%), Query Frame = 1


Query: 1   MSSNSNCSQGSSSSEVFLLEWIRRHLLEDEL-------DLVGGL---------------- 60
           M S+S+ S   SSS++F LE IRRHLLED+L       ++  G+                
Sbjct: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60

Query: 61  -GKNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGT 120
              N     SS  + D          RGLQFRGVRRRPWGKYAAEIRDP++KGARIWLGT
Sbjct: 61  NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120

Query: 121 YQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 130
           Y TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 153

[Close]

BLAST of CmoCh06G009640 vs. NCBI nr
Match: gi|703072573|ref|XP_010089319.1| (Ethylene-responsive transcription factor 13 [Morus notabilis])

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 12  SSSEVFLLEWIRRHLLEDE-LDLVGGLGKNTPSLASSDGVTDIEAPGKGSSIR-----GL 71
           +S+++ LLE +R+HLL+D+ ++       N   +  +  +T IE   +G+  R     G+
Sbjct: 8   NSADMALLESVRQHLLDDDCVNPPATFFANVAPVREATRMTGIEQYQEGARERHAPSGGV 67

Query: 72  QFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPH 131
            FRGVRRRPWGKYAAEIRDP + GAR+WLGTY+T E+AALAYDRAAF+MRG+KAKLNFPH
Sbjct: 68  HFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETQEDAALAYDRAAFKMRGSKAKLNFPH 127

Query: 132 MIGSAEALIGIGCCYPKRASPDS 149
           +IGS+  L  +    PKR SP++
Sbjct: 128 LIGSSHEL-ELARVTPKRRSPET 149

[Close]

BLAST of CmoCh06G009640 vs. NCBI nr
Match: gi|764627242|ref|XP_004308505.2| (PREDICTED: ethylene-responsive transcription factor ERF107-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 138.7 bits (348), Expect = 9.8e-30
Identity = 76/165 (46.06%), Postives = 101/165 (61.21%), Query Frame = 1


Query: 8   SQGSSSSEVFLLEWIRRHLLEDELDLVGGLGKNTPSLASSDG------------------ 67
           ++  S+S+  LLE IR+HLL+D+ D       ++PS ++S                    
Sbjct: 47  TESFSNSDWALLESIRQHLLDDDFDTQSAFFADSPSQSTSSSNCTEISSSNVDIVEQNNA 106

Query: 68  ---VTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALA 127
                D+ A    +      FRGVRRRPWGKYAAEIRDP + G R+WLGTY+TAE+A LA
Sbjct: 107 FTTELDVAARDDHAPSAPNHFRGVRRRPWGKYAAEIRDPKKNGTRVWLGTYETAEDAGLA 166

Query: 128 YDRAAFQMRGAKAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPP 152
           YDRAAF+MRG+KAKLNFPH+IG+ +  + +G   PKRASP+   P
Sbjct: 167 YDRAAFRMRGSKAKLNFPHLIGTHD--MEVGRVLPKRASPEPSSP 209

[Close]

BLAST of CmoCh06G009640 vs. NCBI nr
Match: gi|685352385|ref|XP_009111538.1| (PREDICTED: ethylene-responsive transcription factor 13-like [Brassica rapa])

HSP 1 Score: 138.7 bits (348), Expect = 9.8e-30
Identity = 73/144 (50.69%), Postives = 100/144 (69.44%), Query Frame = 1


Query: 18  LLEWIRRHLL-EDELDLVGGLGKNTPSLASSDGVTDIEAPGKGSSIRGLQFRGVRRRPWG 77
           +L+WIRR LL ED++D+       + SLA+    +   AP +    RG  ++GVRRRPWG
Sbjct: 13  VLDWIRRQLLEEDDIDMTA-----SRSLATDSSSSSSSAPPR----RGATYKGVRRRPWG 72

Query: 78  KYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS---AEAL 137
           KYAAEIRDP++ GAR+WLGTY+T EEAA+AYD+AAF+MRG+KAKLNFPH+I S   A+A+
Sbjct: 73  KYAAEIRDPSKNGARMWLGTYETPEEAAVAYDQAAFKMRGSKAKLNFPHLISSAHEAQAV 132

Query: 138 IGIGCCYPKRASPDSPPPLFSVKR 158
               CC  ++   +S  P+   +R
Sbjct: 133 KVSNCCNKRQRPQESNSPVVPKRR 147

The following BLAST results are available for this feature:

BLAST of CmoCh06G009640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF99_ARATH	3.5e-27	63.74	Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=...	[more]
ERF1_TOBAC	2.8e-24	63.53	Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=...	[more]
ERF2_TOBAC	3.6e-24	72.46	Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=...	[more]
ERF2_NICSY	3.6e-24	72.46	Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 ...	[more]
ERF1_SOLLC	1.8e-23	48.72	Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 ...	[more]

BLAST of CmoCh06G009640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L893_CUCSA	2.8e-31	54.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116730 PE=4 SV=1	[more]
W9QSR5_9ROSA	1.1e-30	52.45	Ethylene-responsive transcription factor 13 OS=Morus notabilis GN=L484_021851 PE...	[more]
M4EV32_BRARP	3.4e-29	63.06	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
R0F2S3_9BRAS	7.5e-29	59.82	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10005868mg PE=4 SV=1	[more]
A0A078HJN1_BRANA	9.9e-29	62.16	BnaCnng09130D protein OS=Brassica napus GN=BnaCnng09130D PE=4 SV=1	[more]

BLAST of CmoCh06G009640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44840.1	2.0e-28	63.74	ethylene-responsive element binding factor 13	[more]
AT4G17500.1	6.5e-24	65.28	ethylene responsive element binding factor 1	[more]
AT5G61600.1	2.5e-23	61.11	ethylene response factor 104	[more]
AT5G47220.1	1.2e-22	60.53	ethylene responsive element binding factor 2	[more]
AT5G51190.1	2.1e-22	70.15	Integrase-type DNA-binding superfamily protein	[more]

BLAST of CmoCh06G009640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077725\|ref\|XP_008439350.1\|	2.5e-33	56.29	PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo]	[more]
gi\|449432982\|ref\|XP_004134277.1\|	4.0e-31	54.90	PREDICTED: ethylene-responsive transcription factor 1 [Cucumis sativus]	[more]
gi\|703072573\|ref\|XP_010089319.1\|	1.5e-30	52.45	Ethylene-responsive transcription factor 13 [Morus notabilis]	[more]
gi\|764627242\|ref\|XP_004308505.2\|	9.8e-30	46.06	PREDICTED: ethylene-responsive transcription factor ERF107-like [Fragaria vesca ...	[more]
gi\|685352385\|ref\|XP_009111538.1\|	9.8e-30	50.69	PREDICTED: ethylene-responsive transcription factor 13-like [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009640.1	CmoCh06G009640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 67..78 score: 1.7E-10coord: 90..106 score: 1.7
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 66..125 score: 9.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 67..116 score: 1.4
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 66..130 score: 5.7
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 66..124 score: 23
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 67..125 score: 1.11
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 63..132 score: 9.7
None	No IPR available	PANTHER	PTHR31190:SF21	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13	coord: 63..132 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G009640	Cucsa.260030	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G009640	CmaCh06G009360	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009640	Cla021069	Watermelon (97103) v1	cmowmB793
CmoCh06G009640	Csa3G116720	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G009640	MELO3C005940	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G009640	ClCG05G000100	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G009640	CSPI03G07060	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G009640	Lsi05G022300	Bottle gourd (USVL1VR-Ls)	cmolsiB758
CmoCh06G009640	MELO3C005940.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G009640	CsaV3_3G007180	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G009640	Cla97C05G080020	Watermelon (97103) v2	cmowmbB833
CmoCh06G009640	Bhi01G000454	Wax gourd	cmowgoB1013
CmoCh06G009640	CsGy3G007210	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G009640	Carg25064	Silver-seed gourd	carcmoB1362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009640	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G009640	Cucurbita maxima (Rimu)	cmacmoB017