CSPI03G07060 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G07060
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ethylene-responsive transcription factor, putative
Location	Chr3 : 6307248 .. 6307843 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGTGGAGGGAGTCGGATGTGTTGGACTCGATCCGTCAGCATCTTCTGGAAGAGAACTTAAACAAGAGTGGGGATGGGATTTGTAGTATTATTCAGGATCATCATTATAAAGGGGCGGCGGTGGAGAATGGAGTGCAGTTCAAGGGAGTGAGGCGGAGGCCATGGGGGAAATATGCGGCGGAGATAAGAGATCCAAAGAGAAATGGAGCCAGAACGTGGCTGGGGACCTTTGAAACGGCCCAAGAAGCAGCTTTGGCCTACGATCGAGCGGCTTTCAAAATCCGAGGAGCTAAGGCGAAACTCAACTTTCCACATCTCATTGATTCTGATTCTACACATTCTACTTCTGCTTCTACTTCGTCTGCTAACCCTCCTCCAAGTCCTACCCACGCCCACCATCAAACTTCTGCTGACAACTACGCCTGTTAGCCTGTTACTTCACTTTTTCCCAAGCCTCTCACCCCCATTTCATTTCCCACGTACTTTGCCTGCTTCCCCATCCATTCCAATTATCTACAAACCGACTATTACACACTAATAATATTATATATCAGTTATATAATTTATTTCCGATTTGCATCAGGGTGAGG

mRNA sequence

ATGTCGTCGTGGAGGGAGTCGGATGTGTTGGACTCGATCCGTCAGCATCTTCTGGAAGAGAACTTAAACAAGAGTGGGGATGGGATTTGTAGTATTATTCAGGATCATCATTATAAAGGGGCGGCGGTGGAGAATGGAGTGCAGTTCAAGGGAGTGAGGCGGAGGCCATGGGGGAAATATGCGGCGGAGATAAGAGATCCAAAGAGAAATGGAGCCAGAACGTGGCTGGGGACCTTTGAAACGGCCCAAGAAGCAGCTTTGGCCTACGATCGAGCGGCTTTCAAAATCCGAGGAGCTAAGGCGAAACTCAACTTTCCACATCTCATTGATTCTGATTCTACACATTCTACTTCTGCTTCTACTTCGTCTGCTAACCCTCCTCCAAGTCCTACCCACGCCCACCATCAAACTTCTGCTGACAACTACGCCTGTTAG

Coding sequence (CDS)

ATGTCGTCGTGGAGGGAGTCGGATGTGTTGGACTCGATCCGTCAGCATCTTCTGGAAGAGAACTTAAACAAGAGTGGGGATGGGATTTGTAGTATTATTCAGGATCATCATTATAAAGGGGCGGCGGTGGAGAATGGAGTGCAGTTCAAGGGAGTGAGGCGGAGGCCATGGGGGAAATATGCGGCGGAGATAAGAGATCCAAAGAGAAATGGAGCCAGAACGTGGCTGGGGACCTTTGAAACGGCCCAAGAAGCAGCTTTGGCCTACGATCGAGCGGCTTTCAAAATCCGAGGAGCTAAGGCGAAACTCAACTTTCCACATCTCATTGATTCTGATTCTACACATTCTACTTCTGCTTCTACTTCGTCTGCTAACCCTCCTCCAAGTCCTACCCACGCCCACCATCAAACTTCTGCTGACAACTACGCCTGTTAG

Homology

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BLAST of CSPI03G07060 vs. Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-25
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 44  ENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKL 103
           + G+Q++GVRRRPWGK+AAEIRDPK+NGAR WLGT+ET ++AA+AYDRAAF++RG+KAKL
Sbjct: 87  QKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKL 146

Query: 104 NFPHLIDSDSTHSTSASTSSANPPPS 130
           NFPHLI S             +P PS
Sbjct: 147 NFPHLIGSCKYEPVRIRPRRRSPEPS 172

[Close]

BLAST of CSPI03G07060 vs. Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 41  AAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAK 100
           A V  G  ++GVR+RPWGK+AAEIRDP +NGAR WLGT+ETA+EAALAYD+AA+++RG+K
Sbjct: 95  AVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSK 154

Query: 101 AKLNFPHLIDSDSTHSTSASTSSANPPPS 130
           A LNFPH I  +       +    +P P+
Sbjct: 155 ALLNFPHRIGLNEPEPVRLTVKRRSPEPA 183

[Close]

BLAST of CSPI03G07060 vs. Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 41  AAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAK 100
           A V  G  ++GVR+RPWGK+AAEIRDP +NGAR WLGT+ETA+EAALAYD+AA+++RG+K
Sbjct: 91  AVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSK 150

Query: 101 AKLNFPHLIDSDSTHSTSASTSSANPPPS 130
           A LNFPH I  +       +    +P P+
Sbjct: 151 ALLNFPHRIGLNEPEPVRLTAKRRSPEPA 179

[Close]

BLAST of CSPI03G07060 vs. Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 46  GVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNF 105
           G +++GVRRRPWGKYAAEIRD  R+GAR WLGTFETA+EAALAYDRAAF++RGAKA LNF
Sbjct: 56  GKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNF 115

Query: 106 PHLIDSDSTHSTSASTSS 124
           P  I + S      S  S
Sbjct: 116 PSEIVNASVSVDKLSLCS 133

[Close]

BLAST of CSPI03G07060 vs. Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-21
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 41  AAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAK 100
           A +  G  ++GVRRRPWGK+AAEIRDP +NGAR WLGT+ET +EAA+AYD+AA+++RG+K
Sbjct: 97  AELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSK 156

Query: 101 AKLNFPHLIDSDSTHSTSASTSSANPPPSPTHAHHQTS 139
           A LNFPH I  +        T+     P P  +   +S
Sbjct: 157 AHLNFPHRIGLNEPEPVRV-TAKRRASPEPASSSENSS 193

[Close]

BLAST of CSPI03G07060 vs. TrEMBL
Match: A0A0A0L2V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116720 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 9.1e-76
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY
Sbjct: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60

Query: 61  AAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120
           AAEIRDPKRNGARTWLGTFETA EAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS
Sbjct: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120

Query: 121 TSSANPPPSPTHAHHQTSADNYAC 145
           TSSANPPPSPTHAHHQTSADNYAC
Sbjct: 121 TSSANPPPSPTHAHHQTSADNYAC 144

[Close]

BLAST of CSPI03G07060 vs. TrEMBL
Match: M4EV32_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STSRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120
           AAEIRDP ++GAR WLGT+ETA+EAA AYDRAAFK+RGAKAKLNFPHLI  D    +  +
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGIDGPEPSRIT 124

Query: 121 TSSANPP 128
               + P
Sbjct: 125 KRRLSSP 128

[Close]

BLAST of CSPI03G07060 vs. TrEMBL
Match: A0A072TWG2_MEDTR (Ethylene response factor OS=Medicago truncatula GN=MTR_8g006840 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 18  LEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLG 77
           +E+    SG  + S+   H  +       + ++GVRRRPWGKYAAEIRDPKRNGAR WLG
Sbjct: 96  IEDQGQSSGTSLASVA--HVQQVPTTSKRLGYRGVRRRPWGKYAAEIRDPKRNGARVWLG 155

Query: 78  TFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHS 117
           T+ETA+ AALAYDRAAFKIRG+KAKLNFPHLIDSD T S
Sbjct: 156 TYETAENAALAYDRAAFKIRGSKAKLNFPHLIDSDYTGS 192

[Close]

BLAST of CSPI03G07060 vs. TrEMBL
Match: A0A078HJN1_BRANA (BnaCnng09130D protein OS=Brassica napus GN=BnaCnng09130D PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 72/140 (51.43%), Postives = 90/140 (64.29%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STRRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120
           AAEIRDP ++GAR WLGT+ETA+EAA AYDRAAFK+RGAKAKLNFPHLI  D    +  +
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGIDGPEPSRIT 124

Query: 121 TSSANPPPSPTHAHHQTSAD 141
               + P S +    + + D
Sbjct: 125 KRRLSTPVSCSPVARRRNTD 141

[Close]

BLAST of CSPI03G07060 vs. TrEMBL
Match: A0A0D3DZH9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 72/140 (51.43%), Postives = 90/140 (64.29%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STRRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120
           AAEIRDP ++GAR WLGT+ETA+EAA AYDRAAFK+RGAKAKLNFPHLI  D    +  +
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGIDGPEPSRIT 124

Query: 121 TSSANPPPSPTHAHHQTSAD 141
               + P S +    + + D
Sbjct: 125 KRRLSTPVSCSPVARRRNTD 141

[Close]

BLAST of CSPI03G07060 vs. TAIR10
Match: AT2G44840.1 (AT2G44840.1 ethylene-responsive element binding factor 13)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 44  ENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKL 103
           + G+Q++GVRRRPWGK+AAEIRDPK+NGAR WLGT+ET ++AA+AYDRAAF++RG+KAKL
Sbjct: 87  QKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKL 146

Query: 104 NFPHLIDSDSTHSTSASTSSANPPPS 130
           NFPHLI S             +P PS
Sbjct: 147 NFPHLIGSCKYEPVRIRPRRRSPEPS 172

[Close]

BLAST of CSPI03G07060 vs. TAIR10
Match: AT4G17500.1 (AT4G17500.1 ethylene responsive element binding factor 1)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-22
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 46  GVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNF 105
           G  ++GVR+RPWGK+AAEIRDP +NGAR WLGTFETA++AALAYDRAAF++RG++A LNF
Sbjct: 145 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204

Query: 106 PHLIDSDS-----THSTSASTSSANPPPSP 131
           P  ++S         S  +S SS+N   +P
Sbjct: 205 PLRVNSGEPDPVRIKSKRSSFSSSNENGAP 234

[Close]

BLAST of CSPI03G07060 vs. TAIR10
Match: AT5G13330.1 (AT5G13330.1 related to AP2 6l)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-22
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 49  FKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHL 108
           ++GVR+RPWGK+AAEIRDPK+  AR WLGTFETA+EAALAYDRAA K +G KAKLNFP  
Sbjct: 39  YRGVRQRPWGKWAAEIRDPKK-AARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPER 98

Query: 109 IDSDSTHST------SASTSSANPPPSP 131
           +   +T +T        S S  +PPP P
Sbjct: 99  VQGPTTTTTISHAPRGVSESMNSPPPRP 125

[Close]

BLAST of CSPI03G07060 vs. TAIR10
Match: AT3G23230.1 (AT3G23230.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-22
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 48  QFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPH 107
           +F+GVRRRPWGK+AAEIRDP RNGAR WLGTFETA+EAA AYDRAAF +RG  A LNFP+
Sbjct: 19  RFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPN 78

Query: 108 ----LIDSDSTHSTSASTSSAN 126
                +D  S     AS+SS++
Sbjct: 79  EYYPRMDDYSLRPPYASSSSSS 100

[Close]

BLAST of CSPI03G07060 vs. TAIR10
Match: AT5G47220.1 (AT5G47220.1 ethylene responsive element binding factor 2)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-21
Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 1


Query: 49  FKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHL 108
           ++GVR+RPWGK+AAEIRDP +NGAR WLGTFETA++AALAYD AAF++RG++A LNFP  
Sbjct: 117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLR 176

Query: 109 IDS--------DSTHSTSASTSSANPPPS 130
           ++S         S  S+S+S+SS++   S
Sbjct: 177 VNSGEPDPVRITSKRSSSSSSSSSSSTSS 205

[Close]

BLAST of CSPI03G07060 vs. NCBI nr
Match: gi|449432980|ref|XP_004134276.1| (PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-75
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY
Sbjct: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60

Query: 61  AAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120
           AAEIRDPKRNGARTWLGTFETA EAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS
Sbjct: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120

Query: 121 TSSANPPPSPTHAHHQTSADNYAC 145
           TSSANPPPSPTHAHHQTSADNYAC
Sbjct: 121 TSSANPPPSPTHAHHQTSADNYAC 144

[Close]

BLAST of CSPI03G07060 vs. NCBI nr
Match: gi|659077723|ref|XP_008439349.1| (PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-57
Identity = 121/139 (87.05%), Postives = 125/139 (89.93%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDG----ICSIIQDHHYKGAAVENGVQFKGVRRRP 60
           MSSWRESDVL+SIRQHLL+ENLNKSGDG    I SIIQDHHYK AAVE   +FKGVRRRP
Sbjct: 1   MSSWRESDVLESIRQHLLKENLNKSGDGDGDGIFSIIQDHHYKAAAVE---KFKGVRRRP 60

Query: 61  WGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHS 120
           WGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDS ST+S
Sbjct: 61  WGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSASTYS 120

Query: 121 TSASTSSANPPPSPTHAHH 136
           TSASTSS   PPSPTHA H
Sbjct: 121 TSASTSSTKRPPSPTHADH 136

[Close]

BLAST of CSPI03G07060 vs. NCBI nr
Match: gi|922331648|ref|XP_013443815.1| (ethylene response factor [Medicago truncatula])

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-27
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 18  LEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLG 77
           +E+    SG  + S+   H  +       + ++GVRRRPWGKYAAEIRDPKRNGAR WLG
Sbjct: 96  IEDQGQSSGTSLASVA--HVQQVPTTSKRLGYRGVRRRPWGKYAAEIRDPKRNGARVWLG 155

Query: 78  TFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHS 117
           T+ETA+ AALAYDRAAFKIRG+KAKLNFPHLIDSD T S
Sbjct: 156 TYETAENAALAYDRAAFKIRGSKAKLNFPHLIDSDYTGS 192

[Close]

BLAST of CSPI03G07060 vs. NCBI nr
Match: gi|923922491|ref|XP_013730431.1| (PREDICTED: ethylene-responsive transcription factor 1-like [Brassica napus])

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-27
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STSRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120
           AAEIRDP ++GAR WLGT+ETA+EAA AYDRAAFK+RGAKAKLNFPHLI  D    +  +
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGIDGPEPSRIT 124

Query: 121 TSSANPP 128
               + P
Sbjct: 125 KRRLSTP 128

[Close]

BLAST of CSPI03G07060 vs. NCBI nr
Match: gi|685370170|ref|XP_009118887.1| (PREDICTED: ethylene-responsive transcription factor 1-like [Brassica rapa])

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-27
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 1


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STSRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSAS 120
           AAEIRDP ++GAR WLGT+ETA+EAA AYDRAAFK+RGAKAKLNFPHLI  D    +  +
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGIDGPEPSRIT 124

Query: 121 TSSANPP 128
               + P
Sbjct: 125 KRRLSSP 128

The following BLAST results are available for this feature:

BLAST of CSPI03G07060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF99_ARATH	4.7e-25	62.79	Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=...	[more]
ERF2_NICSY	1.3e-22	56.18	Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 ...	[more]
ERF2_TOBAC	1.3e-22	56.18	Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=...	[more]
PTI5_SOLLC	1.4e-21	67.95	Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicu...	[more]
ERF1_TOBAC	7.0e-21	51.02	Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=...	[more]

BLAST of CSPI03G07060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2V9_CUCSA	9.1e-76	99.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116720 PE=4 SV=1	[more]
M4EV32_BRARP	4.6e-27	55.12	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A072TWG2_MEDTR	4.6e-27	64.65	Ethylene response factor OS=Medicago truncatula GN=MTR_8g006840 PE=4 SV=1	[more]
A0A078HJN1_BRANA	1.7e-26	51.43	BnaCnng09130D protein OS=Brassica napus GN=BnaCnng09130D PE=4 SV=1	[more]
A0A0D3DZH9_BRAOL	1.7e-26	51.43	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CSPI03G07060 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44840.1	2.7e-26	62.79	ethylene-responsive element binding factor 13	[more]
AT4G17500.1	5.2e-22	57.78	ethylene responsive element binding factor 1	[more]
AT5G13330.1	5.2e-22	60.23	related to AP2 6l	[more]
AT3G23230.1	8.8e-22	64.63	Integrase-type DNA-binding superfamily protein	[more]
AT5G47220.1	2.6e-21	57.30	ethylene responsive element binding factor 2	[more]

BLAST of CSPI03G07060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432980\|ref\|XP_004134276.1\|	1.3e-75	99.31	PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis sativus]	[more]
gi\|659077723\|ref\|XP_008439349.1\|	2.7e-57	87.05	PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo]	[more]
gi\|922331648\|ref\|XP_013443815.1\|	6.6e-27	64.65	ethylene response factor [Medicago truncatula]	[more]
gi\|923922491\|ref\|XP_013730431.1\|	6.6e-27	55.12	PREDICTED: ethylene-responsive transcription factor 1-like [Brassica napus]	[more]
gi\|685370170\|ref\|XP_009118887.1\|	6.6e-27	55.12	PREDICTED: ethylene-responsive transcription factor 1-like [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0006952	defense response
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0002376	immune system process
biological_process	GO:0043067	regulation of programmed cell death
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009753	response to jasmonic acid
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G07060.1	CSPI03G07060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 49..60 score: 1.0E-12coord: 88..108 score: 1.0
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 48..107 score: 2.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 49..98 score: 8.5
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 48..112 score: 7.5
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 48..106 score: 23
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 49..107 score: 5.56
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 48..130 score: 2.3
None	No IPR available	PANTHER	PTHR31190:SF21	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13	coord: 48..130 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G07060	Cla021069	Watermelon (97103) v1	cpiwmB231
CSPI03G07060	Csa3G116720	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G07060	MELO3C005940	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G07060	ClCG05G000100	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G07060	Lsi05G022300	Bottle gourd (USVL1VR-Ls)	cpilsiB207
CSPI03G07060	MELO3C005940.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G07060	CsaV3_3G007180	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G07060	Cla97C05G080020	Watermelon (97103) v2	cpiwmbB209
CSPI03G07060	Bhi01G000455	Wax gourd	cpiwgoB284
CSPI03G07060	Cucsa.260030	Cucumber (Gy14) v1	cgycpiB383
CSPI03G07060	CmaCh06G009360	Cucurbita maxima (Rimu)	cmacpiB830
CSPI03G07060	CmoCh06G009640	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G07060	CsGy3G007210	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G07060	Carg25064	Silver-seed gourd	carcpiB1049

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G07060	Cucurbita pepo (Zucchini)	cpecpiB864
CSPI03G07060	Bottle gourd (USVL1VR-Ls)	cpilsiB197
CSPI03G07060	Cucurbita maxima (Rimu)	cmacpiB004