Cucsa.260030 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.260030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ethylene-responsive transcription factor, putative
Location	scaffold02229 : 6338942 .. 6339638 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCCAATAACAATAAGCAAAAGTAAAAAAaTCAGAAGCAGAAAAATGTTGAGCAGCAGCAGCAGCAGCTTGGAAGGGTCGTCGTCGGATTTATTTCATTTGGAGCAGATTCGGCGGCATCTTCTAGAAGATGACTTAGGGAAAGGGAGTACTCATAATAATGTTGAGGATGGAATAATCAGGTATGATATTAGTAGGAGTGGAGCTGGTTGGGAGATGAGTAATAACAACAACAATATGGTGGATCAAATGTCTTCAATTATTATTAGAGACAATCCGGAGGAGAAGTCTCAGCCTCGGCCTCGAGGTTTGCAGTTCAGAGGAGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCAGAAATCAGAGACCCGAGCAAAAAAGGAGCTCGAATATGGCTGGGAACTTACCACACCGCCCAAGACGCTGCTTTAGCTTACGATCGAGCTGCTTTTCAGATGCGAGGGGCCAAAGCAAAACTCAACTTCCCTCACATCATTTCTTCTAACAACTACTCATGAGTCAAAACTCCAACTTCAACTTATTCTACTCTCCATATTCCATCTACCCTTTAATTTCTCACCAGCCGGCCTTCACAAATTATAATCTCCATTTTCTATCTCAGTCATCTCCAACATCACTCACCAAATGACATACTTATCTTTATCAAAAAACCaCATAGCTTTAACTTTCTCAT

mRNA sequence

TCCTTCCAATAACAATAAGCAAAAGTAAAAAAATCAGAAGCAGAAAAATGTTGAGCAGCAGCAGCAGCAGCTTGGAAGGGTCGTCGTCGGATTTATTTCATTTGGAGCAGATTCGGCGGCATCTTCTAGAAGATGACTTAGGGAAAGGGAGTACTCATAATAATGTTGAGGATGGAATAATCAGGTATGATATTAGTAGGAGTGGAGCTGGTTGGGAGATGAGTAATAACAACAACAATATGGTGGATCAAATGTCTTCAATTATTATTAGAGACAATCCGGAGGAGAAGTCTCAGCCTCGGCCTCGAGGTTTGCAGTTCAGAGGAGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCAGAAATCAGAGACCCGAGCAAAAAAGGAGCTCGAATATGGCTGGGAACTTACCACACCGCCCAAGACGCTGCTTTAGCTTACGATCGAGCTGCTTTTCAGATGCGAGGGGCCAAAGCAAAACTCAACTTCCCTCACATCATTTCTTCTAACAACTACTCATGAGTCAAAACTCCAACTTCAACTTATTCTACTCTCCATATTCCATCTACCCTTTAATTTCTCACCAGCCGGCCTTCACAAATTATAATCTCCATTTTCTATCTCAGTCATCTCCAACATCACTCACCAAATGACATACTTATCTTTATCAAAAAACCACATAGCTTTAACTTTCTCat

Coding sequence (CDS)

ATGTTGAGCAGCAGCAGCAGCAGCTTGGAAGGGTCGTCGTCGGATTTATTTCATTTGGAGCAGATTCGGCGGCATCTTCTAGAAGATGACTTAGGGAAAGGGAGTACTCATAATAATGTTGAGGATGGAATAATCAGGTATGATATTAGTAGGAGTGGAGCTGGTTGGGAGATGAGTAATAACAACAACAATATGGTGGATCAAATGTCTTCAATTATTATTAGAGACAATCCGGAGGAGAAGTCTCAGCCTCGGCCTCGAGGTTTGCAGTTCAGAGGAGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCAGAAATCAGAGACCCGAGCAAAAAAGGAGCTCGAATATGGCTGGGAACTTACCACACCGCCCAAGACGCTGCTTTAGCTTACGATCGAGCTGCTTTTCAGATGCGAGGGGCCAAAGCAAAACTCAACTTCCCTCACATCATTTCTTCTAACAACTACTCATGA

Protein sequence

MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSNNNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS*

Homology

[Close]

BLAST of Cucsa.260030 vs. Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-28
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 84  PRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKA 143
           PR +G+Q+RGVRRRPWGK+AAEIRDP K GAR+WLGTY T +DAA+AYDRAAFQ+RG+KA
Sbjct: 85  PRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKA 144

Query: 144 KLNFPHIISSNNY 157
           KLNFPH+I S  Y
Sbjct: 145 KLNFPHLIGSCKY 157

[Close]

BLAST of Cucsa.260030 vs. Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 55  GWEMSNNNNNMV--DQMSSIIIRDNPEEKSQPR---PRGLQFRGVRRRPWGKYAAEIRDP 114
           GW   N +   V  +Q    I+    E  + P    PRG  +RGVRRRPWGK+AAEIRDP
Sbjct: 64  GWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDP 123

Query: 115 SKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSN 155
           +K GAR+WLGTY T ++AA+AYD+AA++MRG+KA LNFPH I  N
Sbjct: 124 AKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLN 168

[Close]

BLAST of Cucsa.260030 vs. Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 86  PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKL 145
           P+G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGTY TA++AALAYD+AA++MRG+KA L
Sbjct: 94  PKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALL 153

Query: 146 NFPHIISSN 155
           NFPH I  N
Sbjct: 154 NFPHRIGLN 162

[Close]

BLAST of Cucsa.260030 vs. Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 86  PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKL 145
           P+G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGTY TA++AALAYD+AA++MRG+KA L
Sbjct: 98  PKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALL 157

Query: 146 NFPHIISSN 155
           NFPH I  N
Sbjct: 158 NFPHRIGLN 166

[Close]

BLAST of Cucsa.260030 vs. Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-23
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 85  RPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAK 144
           +P+G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGTY +A++AALAY +AAF+MRG KA 
Sbjct: 101 QPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKAL 160

Query: 145 LNFPHIISSN 155
           LNFPH I  N
Sbjct: 161 LNFPHRIGLN 170

[Close]

BLAST of Cucsa.260030 vs. TrEMBL
Match: A0A0A0L893_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116730 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-84
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60
           MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN
Sbjct: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60

Query: 61  NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120
           NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT
Sbjct: 61  NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120

Query: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 158
           YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS
Sbjct: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 157

[Close]

BLAST of Cucsa.260030 vs. TrEMBL
Match: M5WET5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014367mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.0e-29
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 1


Query: 12  SSSDLFHLEQIRRHLLEDDLGKGSTH--NNVEDGIIRYDISRSGAGWEMSNNNNNMVDQM 71
           +SS+   LE IR+HLL+DD    +T   +  ED    YD + S +    S+ +  +    
Sbjct: 7   TSSNWALLESIRQHLLDDDFENQATFLVSAAEDDAPLYDCAPSTSS--SSHAHFGVEGWG 66

Query: 72  SSIIIRDNP-EEKSQPR-----PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHT 131
            +I I D+  + K + R     P G  FRGVRRRPWGKYAAEIRDP K GAR+WLGTY T
Sbjct: 67  DTIAILDHDLDVKVEARVNHAPPSGRHFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYET 126

Query: 132 AQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156
           A+DA LAYDRAAF+MRG+KAKLNFPH+I S++
Sbjct: 127 AEDAGLAYDRAAFKMRGSKAKLNFPHLIGSHD 156

[Close]

BLAST of Cucsa.260030 vs. TrEMBL
Match: A0A061DUI1_THECC (Ethylene-responsive element binding factor 13, putative OS=Theobroma cacao GN=TCM_005705 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 52  SGAGWEMSNNNNNM----VDQMSSIIIRDNPEEKSQPRPR------GLQFRGVRRRPWGK 111
           + +GW  SN  +N     V+++ S   R+  +E+S+  P       G+ F+GVRRRPWGK
Sbjct: 85  ANSGWSPSNEVDNYTPVAVEELVSTTTREIEKEESKVEPETSVPPSGMHFKGVRRRPWGK 144

Query: 112 YAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNY 157
           YAAEIRDP + GARIWLGTY T +DAALAYDRAAF+MRGAKAKLNFPH+I SN +
Sbjct: 145 YAAEIRDPKRNGARIWLGTYETPEDAALAYDRAAFKMRGAKAKLNFPHLIGSNTW 199

[Close]

BLAST of Cucsa.260030 vs. TrEMBL
Match: A0A140WWE9_LOTCO (AP2/ERF OS=Lotus corniculatus GN=SRF1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-27
Identity = 66/123 (53.66%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 42  DGIIRYDISRSGA--GWEMSNNNNNMVDQMSSIIIRDNPEEKSQ---------PRPRGLQ 101
           D ++ Y   R  A  GW +  NNNN V +++++   +N  E            P  RG  
Sbjct: 63  DDMVIYSALREAATTGW-LPTNNNNGVMEVNTVAKMENESENCSSTGARGSRTPTKRGWS 122

Query: 102 FRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHI 154
           +RGVR+RPWGKYAAEIR P K G+R+WLGTY TA+DAALAYDRAAF+MRG+KAKLNFPH+
Sbjct: 123 YRGVRKRPWGKYAAEIRGPKKNGSRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHL 182

[Close]

BLAST of Cucsa.260030 vs. TrEMBL
Match: A0A0D2RDC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G108500 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-27
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 73  IIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYD 132
           I+    E  +  RPRG+ F+GVRRRPWGKYAAEIRDP + G+RIWLGTY T +DAALAYD
Sbjct: 114 IVNVERETNAPLRPRGMNFKGVRRRPWGKYAAEIRDPKRNGSRIWLGTYETPEDAALAYD 173

Query: 133 RAAFQMRGAKAKLNFPHIISSN 155
           RAAF+MRGAKAKLNFPH+I SN
Sbjct: 174 RAAFEMRGAKAKLNFPHLIGSN 195

[Close]

BLAST of Cucsa.260030 vs. TAIR10
Match: AT2G44840.1 (AT2G44840.1 ethylene-responsive element binding factor 13)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-29
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 84  PRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKA 143
           PR +G+Q+RGVRRRPWGK+AAEIRDP K GAR+WLGTY T +DAA+AYDRAAFQ+RG+KA
Sbjct: 85  PRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKA 144

Query: 144 KLNFPHIISSNNY 157
           KLNFPH+I S  Y
Sbjct: 145 KLNFPHLIGSCKY 157

[Close]

BLAST of Cucsa.260030 vs. TAIR10
Match: AT4G17500.1 (AT4G17500.1 ethylene responsive element binding factor 1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-24
Identity = 61/136 (44.85%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 38  NNVEDGIIRYDISRSG--AGWEMSNNNNNMVDQMSSIIIRDNPE------------EKSQ 97
           N+ ED ++ Y I       GWE S+++++        +  + PE            EK+ 
Sbjct: 76  NDSEDMLV-YGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTS 135

Query: 98  P------RPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQ 154
           P        +G  +RGVR+RPWGK+AAEIRDP+K GAR+WLGT+ TA+DAALAYDRAAF+
Sbjct: 136 PVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFR 195

[Close]

BLAST of Cucsa.260030 vs. TAIR10
Match: AT5G61600.1 (AT5G61600.1 ethylene response factor 104)

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-23
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 19  LEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGW--EMSNNNNNMVDQ----MSSI 78
           ++ I +HLL D +   + H ++    +    S +G       S   N+ ++Q    + ++
Sbjct: 10  IDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTLNQRKPPLPNL 69

Query: 79  IIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQDAALAYD 138
            +      K++       +RGVRRRPWGKYAAEIRDP+KKG RIWLGTY TA +A  AYD
Sbjct: 70  SVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYD 129

Query: 139 RAAFQMRGAKAKLNFP 149
           +AAFQ+RG KA LNFP
Sbjct: 130 QAAFQLRGRKAILNFP 145

[Close]

BLAST of Cucsa.260030 vs. TAIR10
Match: AT2G33710.2 (AT2G33710.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-22
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 67  DQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHTAQD 126
           DQ SS+ +    +EKS  R R   +RGVR+RPWGK+AAEIRDP+K  AR+WLGT+ TA++
Sbjct: 52  DQSSSLTL----QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEE 111

Query: 127 AALAYDRAAFQMRGAKAKLNFPHIISSN 155
           AALAYD+AAF+ RG KAKLNFP  I  N
Sbjct: 112 AALAYDKAAFEFRGHKAKLNFPEHIRVN 132

[Close]

BLAST of Cucsa.260030 vs. TAIR10
Match: AT5G47220.1 (AT5G47220.1 ethylene responsive element binding factor 2)

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-22
Identity = 65/172 (37.79%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 14  SDLFHLEQIRRHLL----EDDL----------------GKGSTHNNVEDGIIRYDISRSG 73
           SD   LE I RHLL    E++L                G     N+ ED ++ Y + +  
Sbjct: 9   SDYALLESITRHLLGGGGENELRLNESTPSSCFTESWGGLPLKENDSEDMLV-YGLLKDA 68

Query: 74  AGWEMSNNNNNMVDQMSSIIIRDNP-----EEK-------SQPRPRGLQFRGVRRRPWGK 133
             ++ S+++ + +    ++ +         EEK       ++   +   +RGVR+RPWGK
Sbjct: 69  FHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGK 128

Query: 134 YAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 154
           +AAEIRDP+K GAR+WLGT+ TA+DAALAYD AAF+MRG++A LNFP  ++S
Sbjct: 129 FAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNS 179

[Close]

BLAST of Cucsa.260030 vs. NCBI nr
Match: gi|449432982|ref|XP_004134277.1| (PREDICTED: ethylene-responsive transcription factor 1 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 1.7e-84
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60
           MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN
Sbjct: 1   MLSSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSN 60

Query: 61  NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120
           NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT
Sbjct: 61  NNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGT 120

Query: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 158
           YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS
Sbjct: 121 YHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNYS 157

[Close]

BLAST of Cucsa.260030 vs. NCBI nr
Match: gi|659077725|ref|XP_008439350.1| (PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 147/154 (95.45%), Postives = 149/154 (96.75%), Query Frame = 1


Query: 3   SSSSSSLEGSSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDISRSGAGWEMSNNN 62
           SSSSSSLEGSSSDLF LEQIRRHLLEDDLGKGST+NNVEDGIIRYDIS SGAGWEMSNNN
Sbjct: 5   SSSSSSLEGSSSDLFLLEQIRRHLLEDDLGKGSTNNNVEDGIIRYDISCSGAGWEMSNNN 64

Query: 63  NN-MVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTY 122
           NN MVDQMSSIIIRDNPEEKS  RPRGLQFRGVRRRPWGKYAAEIRDPS+KGARIWLGTY
Sbjct: 65  NNNMVDQMSSIIIRDNPEEKS--RPRGLQFRGVRRRPWGKYAAEIRDPSRKGARIWLGTY 124

Query: 123 HTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156
           HTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNN
Sbjct: 125 HTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156

[Close]

BLAST of Cucsa.260030 vs. NCBI nr
Match: gi|694414750|ref|XP_009335577.1| (PREDICTED: ethylene-responsive transcription factor 2-like [Pyrus x bretschneideri])

HSP 1 Score: 135.6 bits (340), Expect = 7.7e-29
Identity = 77/156 (49.36%), Postives = 97/156 (62.18%), Query Frame = 1


Query: 12  SSSDLFHLEQIRRHLLEDDLGKGSTHNNVEDGIIRYDI--------SRSGAGWEMSNNNN 71
           SSS+   LE IR+HLL DDL    T       +++ D         S S +   +  ++ 
Sbjct: 7   SSSNWAFLESIRQHLLNDDL---ETQETCLANVVQLDAPLHNSPSTSSSSSAHFVVESSG 66

Query: 72  NMVDQMSSIIIRDNPEEKS----QPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLG 131
           N +  M+  +   N  E +    Q   RG  FRGVRRRPWGKYAAEIRDP K GARIWLG
Sbjct: 67  NTMGVMNHALETSNKFELAAGAVQSPFRGRHFRGVRRRPWGKYAAEIRDPKKNGARIWLG 126

Query: 132 TYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156
           TY TA+DA LAYDRAAF+MRG+KAKLNFPH+I +++
Sbjct: 127 TYETAEDAGLAYDRAAFKMRGSKAKLNFPHLIGTHD 159

[Close]

BLAST of Cucsa.260030 vs. NCBI nr
Match: gi|595816489|ref|XP_007204071.1| (hypothetical protein PRUPE_ppb014367mg [Prunus persica])

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 1


Query: 12  SSSDLFHLEQIRRHLLEDDLGKGSTH--NNVEDGIIRYDISRSGAGWEMSNNNNNMVDQM 71
           +SS+   LE IR+HLL+DD    +T   +  ED    YD + S +    S+ +  +    
Sbjct: 7   TSSNWALLESIRQHLLDDDFENQATFLVSAAEDDAPLYDCAPSTSS--SSHAHFGVEGWG 66

Query: 72  SSIIIRDNP-EEKSQPR-----PRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWLGTYHT 131
            +I I D+  + K + R     P G  FRGVRRRPWGKYAAEIRDP K GAR+WLGTY T
Sbjct: 67  DTIAILDHDLDVKVEARVNHAPPSGRHFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYET 126

Query: 132 AQDAALAYDRAAFQMRGAKAKLNFPHIISSNN 156
           A+DA LAYDRAAF+MRG+KAKLNFPH+I S++
Sbjct: 127 AEDAGLAYDRAAFKMRGSKAKLNFPHLIGSHD 156

[Close]

BLAST of Cucsa.260030 vs. NCBI nr
Match: gi|590723856|ref|XP_007052302.1| (Ethylene-responsive element binding factor 13, putative [Theobroma cacao])

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 52  SGAGWEMSNNNNNM----VDQMSSIIIRDNPEEKSQPRPR------GLQFRGVRRRPWGK 111
           + +GW  SN  +N     V+++ S   R+  +E+S+  P       G+ F+GVRRRPWGK
Sbjct: 85  ANSGWSPSNEVDNYTPVAVEELVSTTTREIEKEESKVEPETSVPPSGMHFKGVRRRPWGK 144

Query: 112 YAAEIRDPSKKGARIWLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISSNNY 157
           YAAEIRDP + GARIWLGTY T +DAALAYDRAAF+MRGAKAKLNFPH+I SN +
Sbjct: 145 YAAEIRDPKRNGARIWLGTYETPEDAALAYDRAAFKMRGAKAKLNFPHLIGSNTW 199

The following BLAST results are available for this feature:

BLAST of Cucsa.260030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF99_ARATH	2.2e-28	75.34	Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=...	[more]
ERF1_TOBAC	1.1e-24	54.29	Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=...	[more]
ERF2_TOBAC	2.5e-24	71.01	Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=...	[more]
ERF2_NICSY	2.5e-24	71.01	Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 ...	[more]
ERF1_SOLLC	2.2e-23	68.57	Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 ...	[more]

BLAST of Cucsa.260030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L893_CUCSA	1.2e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116730 PE=4 SV=1	[more]
M5WET5_PRUPE	7.0e-29	51.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014367mg PE=4 SV=1	[more]
A0A061DUI1_THECC	1.2e-28	57.39	Ethylene-responsive element binding factor 13, putative OS=Theobroma cacao GN=TC...	[more]
A0A140WWE9_LOTCO	1.7e-27	53.66	AP2/ERF OS=Lotus corniculatus GN=SRF1 PE=2 SV=1	[more]
A0A0D2RDC4_GOSRA	2.2e-27	71.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G108500 PE=4 SV=1	[more]

BLAST of Cucsa.260030 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44840.1	1.3e-29	75.34	ethylene-responsive element binding factor 13	[more]
AT4G17500.1	2.7e-24	44.85	ethylene responsive element binding factor 1	[more]
AT5G61600.1	6.7e-23	42.65	ethylene response factor 104	[more]
AT2G33710.2	1.5e-22	61.36	Integrase-type DNA-binding superfamily protein	[more]
AT5G47220.1	2.5e-22	37.79	ethylene responsive element binding factor 2	[more]

BLAST of Cucsa.260030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432982\|ref\|XP_004134277.1\|	1.7e-84	100.00	PREDICTED: ethylene-responsive transcription factor 1 [Cucumis sativus]	[more]
gi\|659077725\|ref\|XP_008439350.1\|	1.6e-74	95.45	PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo]	[more]
gi\|694414750\|ref\|XP_009335577.1\|	7.7e-29	49.36	PREDICTED: ethylene-responsive transcription factor 2-like [Pyrus x bretschneide...	[more]
gi\|595816489\|ref\|XP_007204071.1\|	1.0e-28	51.32	hypothetical protein PRUPE_ppb014367mg [Prunus persica]	[more]
gi\|590723856\|ref\|XP_007052302.1\|	1.7e-28	57.39	Ethylene-responsive element binding factor 13, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.260030.1	Cucsa.260030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 130..150 score: 5.4E-13coord: 91..102 score: 5.4
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 90..149 score: 6.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 91..140 score: 1.0
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 90..154 score: 1.4
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 90..148 score: 23
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 91..149 score: 1.24
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 9..156 score: 1.7
None	No IPR available	PANTHER	PTHR31190:SF21	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13	coord: 9..156 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.260030	Cla021069	Watermelon (97103) v1	cgywmB479
Cucsa.260030	Csa3G116720	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.260030	MELO3C005940	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.260030	ClCG05G000100	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.260030	CSPI03G07060	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.260030	CmaCh06G009360	Cucurbita maxima (Rimu)	cgycmaB0728
Cucsa.260030	CmoCh06G009640	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.260030	Lsi05G022300	Bottle gourd (USVL1VR-Ls)	cgylsiB415
Cucsa.260030	MELO3C005940.2	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.260030	CsaV3_3G007180	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.260030	Cla97C05G080020	Watermelon (97103) v2	cgywmbB452
Cucsa.260030	Bhi01G000454	Wax gourd	cgywgoB514
Cucsa.260030	Carg25064	Silver-seed gourd	carcgyB1129

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.260030	Cucurbita maxima (Rimu)	cgycmaB0707
Cucsa.260030	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.260030	Bottle gourd (USVL1VR-Ls)	cgylsiB421