CsGy3G007210 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ethylene-responsive transcription factor 13-like
Location	Chr3 : 6284135 .. 6284569 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGTGGAGGGAGTCGGATGTGTTGGACTCGATCCGTCAGCATCTTCTGGAAGAGAACTTAAACAAGAGTGGGGATGGGATTTGTAGTATTATTCAGGATCATCATTATAAAGGGGCGGCGGTGGAGAATGGAGTGCAGTTCAAGGGAGTGAGGCGGAGGCCATGGGGGAAATATGCGGCGGAGATAAGAGATCCAAAGAGAAATGGAGCCAGAACGTGGCTGGGGACCTTTGAAACGGCCCTAGAAGCAGCTTTGGCCTACGATCGAGCGGCTTTCAAAATCCGAGGAGCTAAGGCGAAACTCAACTTTCCACATCTCATTGATTCTGATTCTACACATTCTACTTCTGCTTCTACTTCGTCTGCTAACCCTCCTCCAAGTCCTACCCACGCCCACCATCAAACTTCTGCTGACAACTACGCCTGTTAG

mRNA sequence

ATGTCGTCGTGGAGGGAGTCGGATGTGTTGGACTCGATCCGTCAGCATCTTCTGGAAGAGAACTTAAACAAGAGTGGGGATGGGATTTGTAGTATTATTCAGGATCATCATTATAAAGGGGCGGCGGTGGAGAATGGAGTGCAGTTCAAGGGAGTGAGGCGGAGGCCATGGGGGAAATATGCGGCGGAGATAAGAGATCCAAAGAGAAATGGAGCCAGAACGTGGCTGGGGACCTTTGAAACGGCCCTAGAAGCAGCTTTGGCCTACGATCGAGCGGCTTTCAAAATCCGAGGAGCTAAGGCGAAACTCAACTTTCCACATCTCATTGATTCTGATTCTACACATTCTACTTCTGCTTCTACTTCGTCTGCTAACCCTCCTCCAAGTCCTACCCACGCCCACCATCAAACTTCTGCTGACAACTACGCCTGTTAG

Coding sequence (CDS)

ATGTCGTCGTGGAGGGAGTCGGATGTGTTGGACTCGATCCGTCAGCATCTTCTGGAAGAGAACTTAAACAAGAGTGGGGATGGGATTTGTAGTATTATTCAGGATCATCATTATAAAGGGGCGGCGGTGGAGAATGGAGTGCAGTTCAAGGGAGTGAGGCGGAGGCCATGGGGGAAATATGCGGCGGAGATAAGAGATCCAAAGAGAAATGGAGCCAGAACGTGGCTGGGGACCTTTGAAACGGCCCTAGAAGCAGCTTTGGCCTACGATCGAGCGGCTTTCAAAATCCGAGGAGCTAAGGCGAAACTCAACTTTCCACATCTCATTGATTCTGATTCTACACATTCTACTTCTGCTTCTACTTCGTCTGCTAACCCTCCTCCAAGTCCTACCCACGCCCACCATCAAACTTCTGCTGACAACTACGCCTGTTAG

Protein sequence

MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDSTHSTSASTSSANPPPSPTHAHHQTSADNYAC

Homology

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BLAST of CsGy3G007210 vs. NCBI nr
Match: XP_004134276.1 (PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis sativus] >KGN56335.1 hypothetical protein Csa_3G116720 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 5.5e-62
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY
Sbjct: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60

Query: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDXXXXXXXX 120
           AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDXXXXXXXX
Sbjct: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXHQTSADNYAC 145
           XXXXXXXXXXXXXXHQTSADNYAC
Sbjct: 121 XXXXXXXXXXXXXXHQTSADNYAC 144

[Close]

BLAST of CsGy3G007210 vs. NCBI nr
Match: XP_008439349.1 (PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 7.7e-48
Identity = 102/115 (88.70%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSG----DGICSIIQDHHYKGAAVENGVQFKGVRRRP 60
           MSSWRESDVL+SIRQHLL+ENLNKSG    DGI SIIQDHHYK AAVE   +FKGVRRRP
Sbjct: 1   MSSWRESDVLESIRQHLLKENLNKSGDGXXDGIFSIIQDHHYKAAAVE---KFKGVRRRP 60

Query: 61  WGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDS 112
           WGKYAAEIRDPKRNGARTWLGTFETA EAALAYDRAAFKIRGAKAKLNFPHLIDS
Sbjct: 61  WGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDS 112

[Close]

BLAST of CsGy3G007210 vs. NCBI nr
Match: XP_022974259.1 (ethylene-responsive transcription factor 13-like [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 2   SSWRESDVLDSIRQHLLEENLN------------KSGDGICSIIQDHHYKGAAVENGVQF 61
           SS  E  +L+ IR+HLLE+ L+            KSGDG+  I  +   KG+++  G+QF
Sbjct: 11  SSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLKSGDGVTDI--EAPGKGSSI-RGLQF 70

Query: 62  KGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLI 112
           +GVRRRPWGKYAAEIRDP R GAR WLGT++TA EAALAYDRAAF++RGAKAKLNFPH+I
Sbjct: 71  RGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMI 129

[Close]

BLAST of CsGy3G007210 vs. NCBI nr
Match: XP_018466862.1 (PREDICTED: ethylene-responsive transcription factor 1-like [Raphanus sativus])

HSP 1 Score: 134.0 bits (336), Expect = 4.0e-28
Identity = 70/112 (62.50%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++        CS   D          G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSTVLDSIRRHLLEDDSESLSSFSCSSSPDLE---PTSRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSD 113
           AAEIRDP ++GAR WLGT+ETA EAA AYDRAAFK+RGAKAKLNFPHLI  D
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGID 113

[Close]

BLAST of CsGy3G007210 vs. NCBI nr
Match: XP_009118887.1 (PREDICTED: ethylene-responsive transcription factor 1-like [Brassica rapa])

HSP 1 Score: 131.3 bits (329), Expect = 2.6e-27
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STSRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSD 113
           AAEIRDP ++GAR WLGT+ETA EAA AYDRAAFK+RGAKAKLNFPHLI  D
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGID 113

[Close]

BLAST of CsGy3G007210 vs. TAIR10
Match: AT2G44840.1 (ethylene-responsive element binding factor 13)

HSP 1 Score: 117.1 bits (292), Expect = 9.1e-27
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 44  ENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKL 103
           + G+Q++GVRRRPWGK+AAEIRDPK+NGAR WLGT+ET  +AA+AYDRAAF++RG+KAKL
Sbjct: 87  QKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKL 146

Query: 104 NFPHLIDS 112
           NFPHLI S
Sbjct: 147 NFPHLIGS 154

[Close]

BLAST of CsGy3G007210 vs. TAIR10
Match: AT4G17500.1 (ethylene responsive element binding factor 1)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-22
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 46  GVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNF 105
           G  ++GVR+RPWGK+AAEIRDP +NGAR WLGTFETA +AALAYDRAAF++RG++A LNF
Sbjct: 145 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204

Query: 106 PHLIDS 112
           P  ++S
Sbjct: 205 PLRVNS 210

[Close]

BLAST of CsGy3G007210 vs. TAIR10
Match: AT3G23230.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-22
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 48  QFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPH 107
           +F+GVRRRPWGK+AAEIRDP RNGAR WLGTFETA EAA AYDRAAF +RG  A LNFP+
Sbjct: 19  RFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPN 78

[Close]

BLAST of CsGy3G007210 vs. TAIR10
Match: AT5G51190.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 49  FKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFP 107
           ++GVRRRPWGKYAAEIRDP + G R WLGTF+TA+EAA  YD+AAFK+RG+KA LNFP
Sbjct: 72  YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129

[Close]

BLAST of CsGy3G007210 vs. TAIR10
Match: AT4G17490.1 (ethylene responsive element binding factor 6)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-21
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 42  AVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKA 101
           A E    ++GVR RPWGK+AAEIRDP R G R WLGTFETA+EAA AYD+ AF++RG+KA
Sbjct: 130 AAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKA 189

Query: 102 KLNFPHLID 111
            LNFP  +D
Sbjct: 190 ILNFPLEVD 198

[Close]

BLAST of CsGy3G007210 vs. Swiss-Prot
Match: sp|Q8L9K1|ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=ERF13 PE=2 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-25
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 44  ENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKL 103
           + G+Q++GVRRRPWGK+AAEIRDPK+NGAR WLGT+ET  +AA+AYDRAAF++RG+KAKL
Sbjct: 87  QKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKL 146

Query: 104 NFPHLIDS 112
           NFPHLI S
Sbjct: 147 NFPHLIGS 154

[Close]

BLAST of CsGy3G007210 vs. Swiss-Prot
Match: sp|Q9LW50|ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 41  AAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAK 100
           A V  G  ++GVR+RPWGK+AAEIRDP +NGAR WLGT+ETA EAALAYD+AA+++RG+K
Sbjct: 95  AVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSK 154

Query: 101 AKLNFPHLI 110
           A LNFPH I
Sbjct: 155 ALLNFPHRI 163

[Close]

BLAST of CsGy3G007210 vs. Swiss-Prot
Match: sp|Q40479|ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 41  AAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAK 100
           A V  G  ++GVR+RPWGK+AAEIRDP +NGAR WLGT+ETA EAALAYD+AA+++RG+K
Sbjct: 91  AVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSK 150

Query: 101 AKLNFPHLI 110
           A LNFPH I
Sbjct: 151 ALLNFPHRI 159

[Close]

BLAST of CsGy3G007210 vs. Swiss-Prot
Match: sp|O04681|PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-22
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 46  GVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNF 105
           G +++GVRRRPWGKYAAEIRD  R+GAR WLGTFETA EAALAYDRAAF++RGAKA LNF
Sbjct: 56  GKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNF 115

Query: 106 P 107
           P
Sbjct: 116 P 116

[Close]

BLAST of CsGy3G007210 vs. Swiss-Prot
Match: sp|Q40476|ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum OX=4097 GN=ERF1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.4e-22
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 41  AAVENGVQFKGVRRRPWGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAK 100
           A +  G  ++GVRRRPWGK+AAEIRDP +NGAR WLGT+ET  EAA+AYD+AA+++RG+K
Sbjct: 97  AELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSK 156

Query: 101 AKLNFPHLI 110
           A LNFPH I
Sbjct: 157 AHLNFPHRI 165

[Close]

BLAST of CsGy3G007210 vs. TrEMBL
Match: tr|A0A0A0L2V9|A0A0A0L2V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116720 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.6e-62
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY
Sbjct: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60

Query: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDXXXXXXXX 120
           AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDXXXXXXXX
Sbjct: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSDXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXHQTSADNYAC 145
           XXXXXXXXXXXXXXHQTSADNYAC
Sbjct: 121 XXXXXXXXXXXXXXHQTSADNYAC 144

[Close]

BLAST of CsGy3G007210 vs. TrEMBL
Match: tr|A0A1S3AZ89|A0A1S3AZ89_CUCME (ethylene-responsive transcription factor 13-like OS=Cucumis melo OX=3656 GN=LOC103484163 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.1e-48
Identity = 102/115 (88.70%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSG----DGICSIIQDHHYKGAAVENGVQFKGVRRRP 60
           MSSWRESDVL+SIRQHLL+ENLNKSG    DGI SIIQDHHYK AAVE   +FKGVRRRP
Sbjct: 1   MSSWRESDVLESIRQHLLKENLNKSGDGXXDGIFSIIQDHHYKAAAVE---KFKGVRRRP 60

Query: 61  WGKYAAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDS 112
           WGKYAAEIRDPKRNGARTWLGTFETA EAALAYDRAAFKIRGAKAKLNFPHLIDS
Sbjct: 61  WGKYAAEIRDPKRNGARTWLGTFETAQEAALAYDRAAFKIRGAKAKLNFPHLIDS 112

[Close]

BLAST of CsGy3G007210 vs. TrEMBL
Match: tr|M4EV32|M4EV32_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STSRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSD 113
           AAEIRDP ++GAR WLGT+ETA EAA AYDRAAFK+RGAKAKLNFPHLI  D
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGID 113

[Close]

BLAST of CsGy3G007210 vs. TrEMBL
Match: tr|A0A0D3DZH9|A0A0D3DZH9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106309436 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STRRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSD 113
           AAEIRDP ++GAR WLGT+ETA EAA AYDRAAFK+RGAKAKLNFPHLI  D
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGID 113

[Close]

BLAST of CsGy3G007210 vs. TrEMBL
Match: tr|A0A078HJN1|A0A078HJN1_BRANA (BnaCnng09130D protein OS=Brassica napus OX=3708 GN=BnaCnng09130D PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MSSWRESDVLDSIRQHLLEENLNKSGDGICSIIQDHHYKGAAVENGVQFKGVRRRPWGKY 60
           ++S+  S VLDSIR+HLLE++         S   D     +    G  FKGVRRRPWGKY
Sbjct: 5   LTSYDCSSVLDSIRRHLLEDDSESLSSFSSSSSPDLE---STRRRGGNFKGVRRRPWGKY 64

Query: 61  AAEIRDPKRNGARTWLGTFETALEAALAYDRAAFKIRGAKAKLNFPHLIDSD 113
           AAEIRDP ++GAR WLGT+ETA EAA AYDRAAFK+RGAKAKLNFPHLI  D
Sbjct: 65  AAEIRDPNKHGARIWLGTYETAEEAAAAYDRAAFKLRGAKAKLNFPHLIGID 113

The following BLAST results are available for this feature:

BLAST of CsGy3G007210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134276.1	5.5e-62	100.00	PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis sativus] >K...	[more]
XP_008439349.1	7.7e-48	88.70	PREDICTED: ethylene-responsive transcription factor 13-like [Cucumis melo]	[more]
XP_022974259.1	2.3e-28	59.84	ethylene-responsive transcription factor 13-like [Cucurbita maxima]	[more]
XP_018466862.1	4.0e-28	62.50	PREDICTED: ethylene-responsive transcription factor 1-like [Raphanus sativus]	[more]
XP_009118887.1	2.6e-27	61.61	PREDICTED: ethylene-responsive transcription factor 1-like [Brassica rapa]	[more]

BLAST of CsGy3G007210 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44840.1	9.1e-27	75.00	ethylene-responsive element binding factor 13	[more]
AT4G17500.1	1.0e-22	69.70	ethylene responsive element binding factor 1	[more]
AT3G23230.1	8.8e-22	78.33	Integrase-type DNA-binding superfamily protein	[more]
AT5G51190.1	2.0e-21	74.14	Integrase-type DNA-binding superfamily protein	[more]
AT4G17490.1	2.6e-21	65.22	ethylene responsive element binding factor 6	[more]

BLAST of CsGy3G007210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9K1\|ERF99_ARATH	1.6e-25	75.00	Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
sp\|Q9LW50\|ERF2_NICSY	1.3e-22	69.57	Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ER...	[more]
sp\|Q40479\|ERF2_TOBAC	1.3e-22	69.57	Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 ...	[more]
sp\|O04681\|PTI5_SOLLC	6.4e-22	80.33	Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicu...	[more]
sp\|Q40476\|ERF1_TOBAC	8.4e-22	66.67	Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum OX=4097 GN=ERF1 ...	[more]

BLAST of CsGy3G007210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2V9\|A0A0A0L2V9_CUCSA	3.6e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116720 PE=4 SV=1	[more]
tr\|A0A1S3AZ89\|A0A1S3AZ89_CUCME	5.1e-48	88.70	ethylene-responsive transcription factor 13-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|M4EV32\|M4EV32_BRARP	1.7e-27	61.61	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|A0A0D3DZH9\|A0A0D3DZH9_BRAOL	2.2e-27	61.61	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10630943...	[more]
tr\|A0A078HJN1\|A0A078HJN1_BRANA	2.2e-27	61.61	BnaCnng09130D protein OS=Brassica napus OX=3708 GN=BnaCnng09130D PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR017392	AP2/ERF-transcript_factor
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007210.1	CsGy3G007210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 49..60 score: 58.03 coord: 88..108 score: 58.7
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 48..112 e-value: 2.6E-34 score: 130.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 49..98 e-value: 3.4E-12 score: 46.3
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 48..106 score: 22.866
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 48..108 e-value: 2.97854E-28 score: 99.6534
IPR017392	AP2/ERF transcription factor ERF/PTI6	PIRSF	PIRSF038123	PTI6	coord: 40..143 e-value: 4.1E-22 score: 77.0
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 48..108 e-value: 1.4E-30 score: 106.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..144
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 40..138
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 49..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G007210	Cla021069	Watermelon (97103) v1	cgybwmB217
CsGy3G007210	Csa3G116720	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G007210	MELO3C005940	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G007210	ClCG05G000100	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G007210	CSPI03G07060	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G007210	CmaCh06G009360	Cucurbita maxima (Rimu)	cgybcmaB430
CsGy3G007210	CmoCh06G009640	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G007210	Lsi05G022300	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G007210	MELO3C005940.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G007210	CsaV3_3G007180	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G007210	Cla97C05G080020	Watermelon (97103) v2	cgybwmbB196
CsGy3G007210	Bhi01G000455	Wax gourd	cgybwgoB272
CsGy3G007210	Carg25064	Silver-seed gourd	carcgybB0997

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G007210	Cucurbita maxima (Rimu)	cgybcmaB280
CsGy3G007210	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G007210	Bottle gourd (USVL1VR-Ls)	cgyblsiB183