CmoCh03G010400 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G010400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RPM1-interacting protein 4 (RIN4) family protein
Location	Cmo_Chr03 : 7774719 .. 7780310 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTTTTCTTTTTTATTTCTTTTGTGTTCTTGCCCGGTGATTCTTCTTCGCTTCTGCTCTAAGCTTTCACTCGCATTCCTCTTCGCAGAGTACAGAACTCGAACTCTCCTCTTGCAGCTTGAAGCGTCTTCTCGTCCGGCGTTCTTTTCTGTGTTGTGAAGTGAGAATTTGCAGTCGATACCATGGACGATCGGAAGGAGGTCGTTTTTTTTCTCTGTTTTTTTCGCCTTGCTGCTTGTGTGATTTTCTTGCTCTGTTTTTTTTTTTTTTTTTTTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTGGATATTTGTTTCCGTTGAGAAGCGTAGGGCGTCGTTGTGTACTTTTCGTTCTTTGCTAGTGATAGAGAGGAAATGCATAAATTTCTTGATCTGAGTTGAAATGTTTAGCGGGACTCTTGAAGAGGTGAGATTGTCGTCGCTTTGGTGTTTGACCTCGCCTAATGAAAACAATCTTAGAAGCATTAGAATTTCGTTATTATTAATAAGTTTTTTTTGGTCAAACTGTGAGTAAAACGTTGCTCTCTTATTCGTTCTTTTGAGCGGAATCATCGCTGTTTTCGTGGCATTTCATCTTGCACATGCACTGGTATTACCATTTTCCTCTTCGAAATTTGAGATTCTCTTTTTTTTTTTTCCTTATCTTTCCACCTTTTCCGGTCGAAATTTCTCACATTGCTTTTAAATTTCCGAAACGTAATTTGATTAGTTCTCTAGCTTGGTTGGATTTTGACGTCTTTATTTTGTCACGGGAGAAATTAGCGATATGCTTTTGCTTTTTAACCGTTTATGATTAATTCACGGAGGCAATCATGTTACTTTTTCTAAGCTGGGAAGCAGTCAAGCCTGTCAACTTTTTCTTCCATCCTCTTGCCAATTATTTTCCTATGGTTCCATAATTTCAACGCTTTAGCCGATAGGTTTCCTTCAGTTGCTCTTCTATTTCGACCATTGACTTTTTGTTTATTTATTTATATATATTTTAGCATGTTCTGAAGACTGAAAAATAAAATTTCAGAGAAATTGCTGTCGCTGACCTTGAAGTGGAAAAACTTATCCAATTAAATACTCTCCACATATAATGAATCGTATAGTTATTTGATTTATAAGAGAAACTTACTTTTTGGCTCGAATAAGATGGAAAATTGGGAATAGATTAAAACAAAGCCTATAATGGTCAGTTTCCTATATGCGCATGTTCTTGTGTGAATACTAATGAAAGACGAGAAATAAATTAGACAATGTGAGGTTACTGTGCAAATCTCTGATATGGCGTGTGCTAGCTGACAATAAATATGTTAGTTTTAGAAAATTGAAAAGCTTTGGAGTTTTTAATTGATGTTGTTTTAATAATTTAATTCTTAAATGTAACTTACATTCTTGGCTTCAACTTAAAGATACGTTCCTTTTTATTTTCTACAGAAAACTGCTCCATGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGATGCCTGACTACTCTCTTGATTTCTCAAAAATTAGGGAAAATAGGAAACAGAACAAGAGAGACATGTCTCGAGCGAGTCTTGGAAATGAAGAGGAGCTCATTGCCTCAGCTGCGCCTCCAACCACAACGAACTCTTTCCCAACTGATAACCATCACCCCTATCATCAGAGTCATCATTCTCCACCAGTAAGATTCTCGCTTCTCCTCCCTAGATTTGATATTCGTAACTTTTTGATTGTCTGATAGGGACCTGCATGTTCTTCTAAACAAATACCGTTTGGACAACTCAAGAATTTGTTGGCTTGGGTCGGGTTATATCAATGTGTTGTATGTGCCTGGAAAGTTCTTTATCAAACTTGTGGGTCCATGCTGCCTGCTATTATTTATTAACTTGTGGGCACAGCTATTGATGAAAAATCAATACAAACCTAAAAGTCACAATGTCCATAGGAATACTTTCCGAAAGTGTCATCTAATTTTATGATGAGTAGGCTAATGAAAATTTTAATATTAGATCTCCTACCCTAAATTCTCTAGGATGGTGTAAATGTTAGTTACATATATATATTAAAAAAAGATCTCAGATACCAGTCATATTTGCAGTCTTATATATTTTTTTTTGATGACCACAACTCTTCCTATCCTTAGCATCTTGGCTTTGAAATTTAGTCAACTTGGTTCTTTGTTTAATTTCCAGGGTTAACCATTGGTGTTACTGTTTGAATTACTTAGAGGTTATCTCTTATATTGGTGACGTGAAACGTACATTGATGTCTGCATAGAAACTAGATCAAACAGGCTGCAGTGTTTTAGAAGAGAACTCTCATCTACTATTTGTTAATGTTAATCATGTCCGTAATGTTACATCCTTTGCCTTATTTCAGGGCATAAAATTTAAACAATAATGATTGAACTTATCGATGATTGGAAAAAGATAAATAAATTGTTTAAGAAGCTGAATGCATTTTTTCATTGTGTCAGTCCAGTTGAAGGGGAATTTTAGATGATCCATTAGCATACATAAATAACCAATAATCTTACAGGTCGTGAGTCTTGTGCATCGTTTAGATTTTATGCAGGCAGTGTGTATTGTTCAATTAGAATGAGGTGAGATGTTGACTTAAAGTTATTGGTGGAAACAAGTTTGGGGCGGGGTCCCCTTCACACCTAGCCCACTAGAAAAAATATTAGTTGTGTGCATTCATGTGGTGTATGTTGCCACATCTCTCAAAGATTGAAATCGGGGGAATAAATCCTATCTCATATTAAGGAACGGCCAGAAAGGTTTTCTTTTCTTAATATGGGGAAGGTGAAGAAAAGCACATTTTTCCTACTAAGGACAGATTCTAGCTTATGTCAATGTCGATTTTTGTTTTAGTTCTTTTTAGATTAGCTGTAATTGGCGGTTGAGAAATTTTCAGGTGTGTTGGTTTATTATGGTTGACCAACTTCCTGTGACCTTCAGATGTGTAGTCTCACATATAATTTCTTGGTTTAATTGAAGGGGATGATGATTATATTTTGGACGGTCAGCCACAATATGACATTTAACTCAGATAATTTCTGGATCACTCTCAGTATATGCTTCGTATATGTTTTATTGCATTAAACAAGAACAGTTAACCACAGCACCGCATTAATTGCTTTGGACAAATCAACTTCTAAATCAAATAGATGAGATGCTGGTTGGCTTGCCTAGTCAGATATAGAATGAAAATAATTGAATGCATTTTATGATCCTATTTATTTAATTGTCGGTTGAAGTTATGTTTTAGATTTTAATTGGACTGAGCATTTAGATATTTTACGTGGTTAGAAGTATGCTTTCATGTTAACTTTATCTGCATTACAAATTAGTCAAACTAGTGAATAACTTGGTTCATATTACCCTTCACCAAAAAAAAAAAAAAAAAAAACTCAGTTCATATTATATAACGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAGAACTCAGTTCATATTATATAACGGGTTTCATAGTTTAACCTCTTCTTTGGTCTTGGGTATTGTAATGAATCGATGAATGAAAAAAGAAAAAAAAGAAAAACGGAGGACTTGATATTGTTGATCCATTCGGAATTAAATGTTTAAGGGAGTAGGGTGCTTGGTTGTCTTAGCTTATTAAGTTTAGGGTTGAAGAACTTCAGTCTATGTTACTGTTGTTTGTGTCTTGACTTCGCAAACGAATGGCTTTGTGAAGTCTGTCTATCTAATGTATATGTTTGGATTGTGCAAAGAAGTGAGTTTGTTAATATTGAAGTTCTGTAAGTTATGCTTGGCAGGGTGGTTTTGAGATTTGAAAAAGTTAATTTGAAAATCTATTTGTTTATTATTTGGCACGTAAAAATGTAAAATTTAAATAAATTGCATGAAATGTTTCTTAACATTTTGCTTGATAGGTTAGTGGGTAACATTATCCAGAGTGAAGGAAGTACTTTTGTAGTATCACTGACAGTTATCAAGCTCATCTCATCCCGGAGGATTAAAAAATTGTGAGGTGGGGGAAGAGTGAGCATTAGAGGGGAAGGAAGAAGGTCTTTCCCAATCTGTCTTGGGGTATTTTGTAGTAAAACCATGGATTAGTTCAATGGTATTGAACTTGTATAAAGTTGTAAAATGGGTGGACAGGCTTCCAGCTCAAGAGATTGGGGTTCTTACCAAAATCTGAATATGGAGGTTCAAACTTGTTTGAACTAATGTACTTTATTTTTAAGTTCTATTTAGGTATGATATCTTAGCTAAACTGTACAAAATAATTGGACGAGTATGGAAAAGTGTGTCTATTTTTGGATGATTCTTACGTGTATATTTTTTTTTTTGTTGATTTGCCAGACAAGAAAGAGCATTCTAAGCTGCTTCAACTGCTGCGTGAAAGCCTGA

mRNA sequence

CCCTTTTTCTTTTTTATTTCTTTTGTGTTCTTGCCCGGTGATTCTTCTTCGCTTCTGCTCTAAGCTTTCACTCGCATTCCTCTTCGCAGAGTACAGAACTCGAACTCTCCTCTTGCAGCTTGAAGCGTCTTCTCGTCCGGCGTTCTTTTCTGTGTTGTGAAGTGAGAATTTGCAGTCGATACCATGGACGATCGGAAGGAGAAAACTGCTCCATGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGATGCCTGACTACTCTCTTGATTTCTCAAAAATTAGGGAAAATAGGAAACAGAACAAGAGAGACATGTCTCGAGCGAGTCTTGGAAATGAAGAGGAGCTCATTGCCTCAGCTGCGCCTCCAACCACAACGAACTCTTTCCCAACTGATAACCATCACCCCTATCATCAGAGTCATCATTCTCCACCAACAAGAAAGAGCATTCTAAGCTGCTTCAACTGCTGCGTGAAAGCCTGA

Coding sequence (CDS)

ATGGACGATCGGAAGGAGAAAACTGCTCCATGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGATGCCTGACTACTCTCTTGATTTCTCAAAAATTAGGGAAAATAGGAAACAGAACAAGAGAGACATGTCTCGAGCGAGTCTTGGAAATGAAGAGGAGCTCATTGCCTCAGCTGCGCCTCCAACCACAACGAACTCTTTCCCAACTGATAACCATCACCCCTATCATCAGAGTCATCATTCTCCACCAACAAGAAAGAGCATTCTAAGCTGCTTCAACTGCTGCGTGAAAGCCTGA

Homology

[Close]

BLAST of CmoCh03G010400 vs. TrEMBL
Match: A0A0A0KJ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487580 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.1e-51
Identity = 95/102 (93.14%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           MDDRKEKTAPWLSVPQFGDWDQKGQ+PDYSLDFSK+RENRKQNKRD+SRASLGNEEELIA
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTNSFPTDNHHPYHQSHHSPPTRKSILSCFNCCVKA 103
            AAPPTTT++FPTDNHHPYHQ+HHSPPTRKSILSCFNCCVKA
Sbjct: 61  KAAPPTTTDTFPTDNHHPYHQNHHSPPTRKSILSCFNCCVKA 102

[Close]

BLAST of CmoCh03G010400 vs. TrEMBL
Match: A0A059AL03_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           M+DRKEK  PWLSVPQFGDWDQKGQ+PDYSLDFSKIRE RKQNKRD+SRAS+GNEEEL +
Sbjct: 19  MEDRKEKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELAS 78

Query: 61  S-AAPPTTTNSFPTDNHHPYHQSHHSPPTRKSILSCFNCCVKA 103
           S    PT T   P D HH YH+S  SPPTR+SILSCFNCCVKA
Sbjct: 79  SKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 117

[Close]

BLAST of CmoCh03G010400 vs. TrEMBL
Match: D7SW64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01630 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-35
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           M+DRKEK APWLSVPQFGDWDQKGQ+PDYSLDFSKIRE RKQNKRD+SRASLGNEEEL+ 
Sbjct: 1   MEDRKEKAAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEELV- 60

Query: 61  SAAPPTTTNSFPTDNHHPYHQSHHSPPTRKSILSCFNCCVKA 103
             APPTT       +HH YHQS HSP  R+SIL CF+CCVKA
Sbjct: 61  --APPTTNADTRQTDHHHYHQS-HSPTGRRSILGCFSCCVKA 98

[Close]

BLAST of CmoCh03G010400 vs. TrEMBL
Match: M5WKN7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013840mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.2e-35
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           M+DRKEK APWLSVPQFGDWDQKGQ+PDYSLDFSKIRE RKQNKRD+SRASLGNEEELIA
Sbjct: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTNSFPTDN-HHP-YHQSHHSPPTRKSILSCFNCCVKA 103
           +     T N  P  N HHP YHQ HHSP TR+SI S FNCCV+A
Sbjct: 61  T----NTANVEPPHNDHHPHYHQRHHSPTTRRSIFSYFNCCVRA 100

[Close]

BLAST of CmoCh03G010400 vs. TrEMBL
Match: A0A059ALU6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.7e-34
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 1   MDDRKE-KTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELI 60
           M+DRKE K  PWLSVPQFGDWDQKGQ+PDYSLDFSKIRE RKQNKRD+SRAS+GNEEEL 
Sbjct: 19  MEDRKEQKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELA 78

Query: 61  AS-AAPPTTTNSFPTDNHHPYHQSHHSPPTRKSILSCFNCCVKA 103
           +S    PT T   P D HH YH+S  SPPTR+SILSCFNCCVKA
Sbjct: 79  SSKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 118

[Close]

BLAST of CmoCh03G010400 vs. TAIR10
Match: AT5G09960.1 (AT5G09960.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-32
Identity = 72/110 (65.45%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 2   DDRKEKTAPWLSVPQFGDWDQKG--QMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELI 61
           DDRKEK  PWLSVPQFGDWDQKG   MPDYS+DF+KIRE RKQNKRD SRASLGNEEELI
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 62  ASAAPPTTTNSFPT---DNHHPYHQSH----HSPPTRKSILSCFNCCVKA 103
                 T+T    T   +N   +  SH    HSP TR+S+ SCFNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

[Close]

BLAST of CmoCh03G010400 vs. TAIR10
Match: AT5G64850.1 (AT5G64850.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-28
Identity = 69/114 (60.53%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 1   MDDRKE-KTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELI 60
           M+DRKE K +PWLSVPQFGDWDQKG   DYS+DFSKIRE RK NKRD SRASLGNEEELI
Sbjct: 1   MEDRKENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELI 60

Query: 61  --------ASAAPPTTTNSFPTDNHHPYHQSH---HSPPTRKSILSCFNCCVKA 103
                      A P    +  +DN++    SH   HSP  R+ I SCFNCCVKA
Sbjct: 61  NPFHDQPPVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114

[Close]

BLAST of CmoCh03G010400 vs. TAIR10
Match: AT5G19473.1 (AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 73.6 bits (179), Expect = 8.1e-14
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 1


Query: 3   DRKEKTAPWLSVPQFGDWDQKG--QMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 62
           D++ + A W  VPQFG WDQKG     +YS+ FSK R NRKQNK  +  +SLG+E+EL+ 
Sbjct: 2   DKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMV 61

Query: 63  SAAPPTTTNSFPTDNHHPYHQSHHSPP-----TRKSILSCFNCCVK 102
           S             NH   H  H +        +K IL+  NCC++
Sbjct: 62  SV----------RRNHQQLHHRHETQDDDPVMKKKRILTYINCCIR 97

[Close]

BLAST of CmoCh03G010400 vs. NCBI nr
Match: gi|449448412|ref|XP_004141960.1| (PREDICTED: uncharacterized protein LOC101206523 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-50
Identity = 95/102 (93.14%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           MDDRKEKTAPWLSVPQFGDWDQKGQ+PDYSLDFSK+RENRKQNKRD+SRASLGNEEELIA
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTNSFPTDNHHPYHQSHHSPPTRKSILSCFNCCVKA 103
            AAPPTTT++FPTDNHHPYHQ+HHSPPTRKSILSCFNCCVKA
Sbjct: 61  KAAPPTTTDTFPTDNHHPYHQNHHSPPTRKSILSCFNCCVKA 102

[Close]

BLAST of CmoCh03G010400 vs. NCBI nr
Match: gi|659079228|ref|XP_008440144.1| (PREDICTED: uncharacterized protein LOC103484698 isoform X2 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           MDDRKEKTAPWLSVPQFGDWDQKGQ+PDYSLDFSK+RENRKQNKRD+SRASLGNEEELIA
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTNSFPTDNHHPY-HQSHHSPPTRKSILSCFNCCVKA 103
            AAPPTTT+SFPTDNHHPY HQSHH PPTRKSILSCFNCCVKA
Sbjct: 61  KAAPPTTTDSFPTDNHHPYHHQSHHPPPTRKSILSCFNCCVKA 103

[Close]

BLAST of CmoCh03G010400 vs. NCBI nr
Match: gi|659079226|ref|XP_008440143.1| (PREDICTED: uncharacterized protein LOC103484698 isoform X1 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 1


Query: 5   KEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIASAAP 64
           +EKTAPWLSVPQFGDWDQKGQ+PDYSLDFSK+RENRKQNKRD+SRASLGNEEELIA AAP
Sbjct: 10  REKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIAKAAP 69

Query: 65  PTTTNSFPTDNHHPY-HQSHHSPPTRKSILSCFNCCVKA 103
           PTTT+SFPTDNHHPY HQSHH PPTRKSILSCFNCCVKA
Sbjct: 70  PTTTDSFPTDNHHPYHHQSHHPPPTRKSILSCFNCCVKA 108

[Close]

BLAST of CmoCh03G010400 vs. NCBI nr
Match: gi|629088113|gb|KCW54366.1| (hypothetical protein EUGRSUZ_I003201, partial [Eucalyptus grandis])

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           M+DRKEK  PWLSVPQFGDWDQKGQ+PDYSLDFSKIRE RKQNKRD+SRAS+GNEEEL +
Sbjct: 19  MEDRKEKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELAS 78

Query: 61  S-AAPPTTTNSFPTDNHHPYHQSHHSPPTRKSILSCFNCCVKA 103
           S    PT T   P D HH YH+S  SPPTR+SILSCFNCCVKA
Sbjct: 79  SKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 117

[Close]

BLAST of CmoCh03G010400 vs. NCBI nr
Match: gi|702459523|ref|XP_010027770.1| (PREDICTED: uncharacterized protein LOC104418198 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 1


Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDMSRASLGNEEELIA 60
           M+DRKEK  PWLSVPQFGDWDQKGQ+PDYSLDFSKIRE RKQNKRD+SRAS+GNEEEL +
Sbjct: 1   MEDRKEKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELAS 60

Query: 61  S-AAPPTTTNSFPTDNHHPYHQSHHSPPTRKSILSCFNCCVKA 103
           S    PT T   P D HH YH+S  SPPTR+SILSCFNCCVKA
Sbjct: 61  SKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 99

The following BLAST results are available for this feature:

BLAST of CmoCh03G010400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G010400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ83_CUCSA	7.1e-51	93.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487580 PE=4 SV=1	[more]
A0A059AL03_EUCGR	1.1e-35	76.70	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4...	[more]
D7SW64_VITVI	3.2e-35	76.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01630 PE=4 SV=...	[more]
M5WKN7_PRUPE	4.2e-35	76.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013840mg PE=4 SV=1	[more]
A0A059ALU6_EUCGR	2.7e-34	75.96	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4...	[more]

BLAST of CmoCh03G010400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09960.1	3.0e-32	65.45	FUNCTIONS IN: molecular_function unknown	[more]
AT5G64850.1	1.2e-28	60.53	FUNCTIONS IN: molecular_function unknown	[more]
AT5G19473.1	8.1e-14	39.62	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CmoCh03G010400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448412\|ref\|XP_004141960.1\|	1.0e-50	93.14	PREDICTED: uncharacterized protein LOC101206523 [Cucumis sativus]	[more]
gi\|659079228\|ref\|XP_008440144.1\|	1.9e-49	93.20	PREDICTED: uncharacterized protein LOC103484698 isoform X2 [Cucumis melo]	[more]
gi\|659079226\|ref\|XP_008440143.1\|	1.2e-46	91.92	PREDICTED: uncharacterized protein LOC103484698 isoform X1 [Cucumis melo]	[more]
gi\|629088113\|gb\|KCW54366.1\|	1.6e-35	76.70	hypothetical protein EUGRSUZ_I003201, partial [Eucalyptus grandis]	[more]
gi\|702459523\|ref\|XP_010027770.1\|	1.6e-35	76.70	PREDICTED: uncharacterized protein LOC104418198 isoform X2 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G010400.1	CmoCh03G010400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33882	FAMILY NOT NAMED	coord: 1..102 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G010400	Cucsa.250380	Cucumber (Gy14) v1	cgycmoB0699
CmoCh03G010400	Cucsa.101650	Cucumber (Gy14) v1	cgycmoB0227
CmoCh03G010400	CmaCh03G010400	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G010400	CmaCh07G007590	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G010400	CmaCh02G005990	Cucurbita maxima (Rimu)	cmacmoB621
CmoCh03G010400	Cla008500	Watermelon (97103) v1	cmowmB620
CmoCh03G010400	Csa6G487580	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G010400	Csa2G297140	Cucumber (Chinese Long) v2	cmocuB641
CmoCh03G010400	MELO3C020960	Melon (DHL92) v3.5.1	cmomeB579
CmoCh03G010400	MELO3C007484	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G010400	ClCG01G016140	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G010400	ClCG02G001020	Watermelon (Charleston Gray)	cmowcgB579
CmoCh03G010400	CSPI02G15140	Wild cucumber (PI 183967)	cmocpiB653
CmoCh03G010400	CSPI06G27280	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G010400	Lsi10G006670	Bottle gourd (USVL1VR-Ls)	cmolsiB577
CmoCh03G010400	Lsi01G010600	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G010400	Cp4.1LG19g11780	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G010400	Cp4.1LG05g10910	Cucurbita pepo (Zucchini)	cmocpeB636
CmoCh03G010400	MELO3C020960.2	Melon (DHL92) v3.6.1	cmomedB663
CmoCh03G010400	MELO3C007484.2	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G010400	CsaV3_2G017680	Cucumber (Chinese Long) v3	cmocucB0765
CmoCh03G010400	CsaV3_6G042410	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G010400	Cla97C02G027420	Watermelon (97103) v2	cmowmbB653
CmoCh03G010400	Cla97C01G015130	Watermelon (97103) v2	cmowmbB642
CmoCh03G010400	Bhi03G001537	Wax gourd	cmowgoB0785
CmoCh03G010400	Bhi10G001876	Wax gourd	cmowgoB0777
CmoCh03G010400	CsGy6G026660	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G010400	Carg05267	Silver-seed gourd	carcmoB1095
CmoCh03G010400	Carg00897	Silver-seed gourd	carcmoB0551
CmoCh03G010400	Carg11669	Silver-seed gourd	carcmoB1424

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G010400	CmoCh02G006020	Cucurbita moschata (Rifu)	cmocmoB431
CmoCh03G010400	CmoCh07G007800	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G010400	Cucurbita pepo (Zucchini)	cmocpeB606