ClCG01G016140 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G016140
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRPM1-interacting protein 4 (RIN4) family protein
LocationCG_Chr01 : 30469261 .. 30473033 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTTTTCTCTTTTATCAAGCGAAGAAGAATATAAGAATTGCAGTCTCGTTGCTCGCTGCTCCTTCTTTGCTTCTGCTCTACGCTTCCACTCTCAATCCTCTTCGTTGAGTAAGGAACTTGAACTCTCCTCTTGCTACTTCAAGCGTCTTCTTGTCCGGTGTTCTTCGTTGTGTTGTCAAGTGAGAACTTGCAGATGGATGATAGGAAGGAGGTTGTTTTTCTCTCTGTTTTCGCTTTGTTGCTTTTGGTGATTTTCTTGCTCTGTTTTTGTGTATGTTTGTTTCCGTGGAGAAACCTAGGGTTTCATTTTGTTCTTTGCGTTTTTTTAGCTATTTAGAGAGAGGAAATGCATATATTTCTTGATCTGAGTTGAATTGTTCATGCGACTCTTGAAGAGGTGAGATTGTTGTCTATTTGGTATTAAACCTCACCTAATGAAAACGATCATAGAAGCATTAGAATCTCGTTATCTTTTGTTTTTTTTTTCTGGTCAAACTGTGAGTTAAATGTTGCTCTGTCGTTCGTTTCGTTTGAGACAAATCATCGCTGTTTTCGTGGCGTTTCATCTTGCACATGCACTGATATTTCCATTTTCCTCTTTGGAATTCGAGACTTGATTTTTTCTTTTACCATATATTTCCGCCTTTTTCGGTCGAAATTTCTTACATTGCTTTTCAAATTCAGAAACGTAATTTGATTTGTTAGTTAGCTTGTTTGGATTTTGACGTATTTGTTTTGTCACGGGAGCAATTAGCGATATGCTTTTGCTTTTTAACCGTTTATGATTAATTCACGGAGGCAATCATGTTACTTTTCTAAGCTGGGAAGCAGTCAAACCTATCAACTTTTTCTTCCATCTTCTTGCAGATTATTTTTCCTATGGTTCCAAAATTTCAACGCTTTAGCCGATAGGTTTCCTTCAGCTGCTCTTCTATTTCAACTATTGACTTTTTGTTTATTTATATTTATATTTTAGCATGTTCTGAAGACTGAAGAATAAAATTTAGAAAAGTTGCTATCACTGACTTTGAAATTGGAAAAATTTATCCAATTATTACACTCCGCAGATAACGAATCAAATTTTAATTTGATTTATAAGAGAAACCTAATGTTTGGCTCTAATAAGATAGGAAATAGATTTTTGTGCTCATGTTCTTTTGTGAATACTAATGAGAAACGACTAATGAATTAGGCAATAAGAGGTTTCTGTCCAAACCTACGATGTGGTGTGTGCTTTAGGTGACAATAAATATGTTAGTTATAGAAAATTGAAAAGCTGTAGAGCCTCTAATTGGTGTTGTTTTAATTTTGAAAAAATAACCGGAAATGTAACTGACAGTCTTGGCTTCAACTTTGAGATACGTTACTTTTTATTTTCTACAGAAAACTGCTCCCTGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGCTGCCTGACTACTCGCTTGATTTCTCAAAACTTAGGGAAAATAGGAAACAAAACAAGAGAGATGTGTCTCGGGCGAGTCTTGGAAATGAAGAGGAGCTCGTTGCCTCAGCCGCACCTCCAACCACAACAGACCCTTTCCCTACTGATAATCATCACCCCTATCATCAGAGTCACCACCCTCCACCAGTAAGATTCTCGCTCCTCCTCCCGAAAATTTCATATTGGTAACTTTTTGATTGTCTGATAGGGACTTGCATGTTCTTCTAAACATATACCGTTTGGACAACTCAATAATTTGTTGGGTTGGGTTACATCAATGTGTTGTATGTGCCTTGAAGGTTCTTTATCAAACTTGTGGGTCCATGCTGCTTGCTATTATCTATTAACTTGTGGATACAGCTATTGATTGTGGAAAAATCAATGCAAAGCTAAAGGTCTAGAGGTCAAAAGAAACACTTTCCTAAAGTGTCATCTAATTTTATGATGTGTAAGCTAACGAAAGTTTTAGTTCCTTGTATATTGGATCTCCTTTCCTAAATGTTGTAGGATGAGGTAGTTATTGTTAGTTACATATATATTGAAAAAAGATCCCGATGACTATATTGTTTGATGAGCATAACTTTATATTCTGTATCATCGTGGCTTTGAAATCTAGTCAATTTGGTTCTTTGTTTAACTGCCTGAGTTAACCATTGGCGTTACTGTTTGGATTATTTAGAAGGTTAGCTCCTATATTGGCGAAGTGAAACAAGCATTGATGTCTGGGTAATTAACAAGCTCAAGCATGCTTCAGTTTTTTAGAAGAGAGTTCTTATTTACTCTCTGTTAACATGAATCATGTCTGTGCTCTGTAATAATACAGCCTTTCCCTTGTTTCAGGGCATACAAGTTAAACAAGAATAATAAAACCAATCCATGTTTGGAAAAAGATATCTAACTTGTTTAAGAAGCTGAGTACATTTTGTGATCATGTTAGTTCATTCAAAGGGGGAAGTTTAGGTTATTCATCAGCCTACTTAAATAACTAATTTTCACAAGTCGAGAGTCTAATGCATCGTTTAGATTTTATGTGGATAGTGTGTATTGTTCAATTAGAATGAGGTGAGATGATGTTGACTTAAAGTTGCGGTTGCAGAAACAAGTTGAGGGCTGGGTCCCTTTCGCCCCTAGCTCACTAGTAATAATTAATTGTGGGCATTCATCTGGTGTTTGCTGCCATATCTCTCATAGATTAAAATTGGGGTAGTAAATCCTATTTCATATTTAGGAATGGCCAGACAGGTTATTATGTGGGGAAGGTGAAGAGAAGCACATTTTCCCTACTGAGGGCAGATTCTAACTTATGTCAATGTTGATTTTTATTCTATTTTCTTTCAGTTTCAATCAAGTCTAATTACCTAAATAAAGGATGCTTGAGATATTTTTGGGTTTGTTGGTTTATTGTGGCTGACCGATCTCCCATGACCTTTAGATGTGTAGTCTTACATATAAATTTCTTGGTTTCAATTGAAAGGGACGGTGATCATATTTTGGAAGGTCAGCCACAATATGACATTTAACTCGTTTGGATCATTCTCGTTTTATGCTTCATATATGGGGAAAATTACCTCCATTCATAGTTTGCCACAAAAGTAGAATCTAAGAATTGTGTGGATTCCGCAGAATAAATGAATAATAAATTAATATATCATTAGATGAGGTATCAAATTATGAATGAGAATATTCCCATTAATTGCTTTGCACAAACCAACTTCTAGATTCAAATAGATGAGATGCTGGTTGCCTTGCCTAGTCAGAAATAGAATGAAAAATAAATGAACACTTTCTACGATCCTATTTTATTTTATCATCAGTTAAAATTGTGTTTTAGATCTTTTAATTGGTCTGGGCATTTAGATATTTTACGTGGTTTAGAAGTATGCTTTACTGTTAACTTTATTTGTATTAAAAATTATTTAGGAATGAGATCTTAGCAAAATTGTACAAAACAGTGGGACCCTCATTCATTTTGAGTAAGTATGGAAAAGTGTCTTTTTTTGGATGATTCTTACATGTTAGTATTTTTGGTTGTTTTGCCAGACAAGAAAGAGCATTCTAAGCTGCTTCAACTGCTGTGTGAAAGCTTGAATTAAGTAGTCTTGAAGGCGACCTCTGCAGGCCCACTTGTAAGTTTAAATGTCATTGTATTAATTTCTTTGGTACGAATACCTCTGTTGTCCTTTATTTGAACTAGAACAATTGTATTATATGTTTGGATTTTGTATGTGGCTTTGTTCCTGTGGCAGCTACTCTTTCTTTAATTTTGCCTTGAATCAAGCAATTAGTTTAGA

mRNA sequence

TTTCTTTTTCTCTTTTATCAAGCGAAGAAGAATATAAGAATTGCAGTCTCGTTGCTCGCTGCTCCTTCTTTGCTTCTGCTCTACGCTTCCACTCTCAATCCTCTTCGTTGAGTAAGGAACTTGAACTCTCCTCTTGCTACTTCAAGCGTCTTCTTGTCCGGTGTTCTTCGTTGTGTTGTCAAGTGAGAACTTGCAGATGGATGATAGGAAGGAGAAAACTGCTCCCTGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGCTGCCTGACTACTCGCTTGATTTCTCAAAACTTAGGGAAAATAGGAAACAAAACAAGAGAGATGTGTCTCGGGCGAGTCTTGGAAATGAAGAGGAGCTCGTTGCCTCAGCCGCACCTCCAACCACAACAGACCCTTTCCCTACTGATAATCATCACCCCTATCATCAGAGTCACCACCCTCCACCAACAAGAAAGAGCATTCTAAGCTGCTTCAACTGCTGTGTGAAAGCTTGAATTAAGTAGTCTTGAAGGCGACCTCTGCAGGCCCACTTGTAAGTTTAAATGTCATTGTATTAATTTCTTTGGTACGAATACCTCTGTTGTCCTTTATTTGAACTAGAACAATTGTATTATATGTTTGGATTTTGTATGTGGCTTTGTTCCTGTGGCAGCTACTCTTTCTTTAATTTTGCCTTGAATCAAGCAATTAGTTTAGA

Coding sequence (CDS)

ATGGATGATAGGAAGGAGAAAACTGCTCCCTGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGCTGCCTGACTACTCGCTTGATTTCTCAAAACTTAGGGAAAATAGGAAACAAAACAAGAGAGATGTGTCTCGGGCGAGTCTTGGAAATGAAGAGGAGCTCGTTGCCTCAGCCGCACCTCCAACCACAACAGACCCTTTCCCTACTGATAATCATCACCCCTATCATCAGAGTCACCACCCTCCACCAACAAGAAAGAGCATTCTAAGCTGCTTCAACTGCTGTGTGAAAGCTTGA

Protein sequence

MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVASAAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA
Homology
[Close]
BLAST of ClCG01G016140 vs. TrEMBL
Match: A0A0A0KJ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487580 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 5.8e-53
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEEL+A
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA 103
            AAPPTTTD FPTDNHHPYHQ+HH PPTRKSILSCFNCCVKA
Sbjct: 61  KAAPPTTTDTFPTDNHHPYHQNHHSPPTRKSILSCFNCCVKA 102

[Close]
BLAST of ClCG01G016140 vs. TrEMBL
Match: A0A059AL03_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.7e-37
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           M+DRKEK  PWLSVPQFGDWDQKGQ+PDYSLDFSK+RE RKQNKRDVSRAS+GNEEEL +
Sbjct: 19  MEDRKEKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELAS 78

Query: 61  S-AAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA 103
           S    PT T   P D HH YH+S   PPTR+SILSCFNCCVKA
Sbjct: 79  SKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 117

[Close]
BLAST of ClCG01G016140 vs. TrEMBL
Match: D7SW64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01630 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-36
Identity = 78/102 (76.47%), Postives = 84/102 (82.35%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           M+DRKEK APWLSVPQFGDWDQKGQ+PDYSLDFSK+RE RKQNKRDVSRASLGNEEELV 
Sbjct: 1   MEDRKEKAAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEELV- 60

Query: 61  SAAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA 103
             APPTT       +HH YHQS H P  R+SIL CF+CCVKA
Sbjct: 61  --APPTTNADTRQTDHHHYHQS-HSPTGRRSILGCFSCCVKA 98

[Close]
BLAST of ClCG01G016140 vs. TrEMBL
Match: M5WKN7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013840mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-36
Identity = 76/103 (73.79%), Postives = 86/103 (83.50%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           M+DRKEK APWLSVPQFGDWDQKGQ+PDYSLDFSK+RE RKQNKRDVSRASLGNEEEL+A
Sbjct: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTDPFPTDNHHP-YHQSHHPPPTRKSILSCFNCCVKA 103
           +       +P P ++HHP YHQ HH P TR+SI S FNCCV+A
Sbjct: 61  TNT--ANVEP-PHNDHHPHYHQRHHSPTTRRSIFSYFNCCVRA 100

[Close]
BLAST of ClCG01G016140 vs. TrEMBL
Match: A0A059ALU6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-35
Identity = 78/104 (75.00%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 1   MDDRKE-KTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELV 60
           M+DRKE K  PWLSVPQFGDWDQKGQ+PDYSLDFSK+RE RKQNKRDVSRAS+GNEEEL 
Sbjct: 19  MEDRKEQKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELA 78

Query: 61  AS-AAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA 103
           +S    PT T   P D HH YH+S   PPTR+SILSCFNCCVKA
Sbjct: 79  SSKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 118

[Close]
BLAST of ClCG01G016140 vs. TAIR10
Match: AT5G09960.1 (AT5G09960.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-32
Identity = 68/110 (61.82%), Postives = 76/110 (69.09%), Query Frame = 1 

Query: 2   DDRKEKTAPWLSVPQFGDWDQKG--QLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELV 61
           DDRKEK  PWLSVPQFGDWDQKG   +PDYS+DF+K+RE RKQNKRD SRASLGNEEEL+
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 62  ASAAPPTTTDPFPT---DNHHPYHQSH----HPPPTRKSILSCFNCCVKA 103
                 T+T    T   +N   +  SH    H P TR+S+ SCFNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

[Close]
BLAST of ClCG01G016140 vs. TAIR10
Match: AT5G64850.1 (AT5G64850.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 124.8 bits (312), Expect = 3.1e-29
Identity = 67/114 (58.77%), Postives = 73/114 (64.04%), Query Frame = 1 

Query: 1   MDDRKE-KTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEEL- 60
           M+DRKE K +PWLSVPQFGDWDQKG   DYS+DFSK+RE RK NKRD SRASLGNEEEL 
Sbjct: 1   MEDRKENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELI 60

Query: 61  --------VASAAPPTTTDPFPTDNHHPYHQSHHP--PPTRKSILSCFNCCVKA 103
                   V +A P   T     +N+      HHP  P  R+ I SCFNCCVKA
Sbjct: 61  NPFHDQPPVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114

[Close]
BLAST of ClCG01G016140 vs. TAIR10
Match: AT5G19473.1 (AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 80.5 bits (197), Expect = 6.7e-16
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 3   DRKEKTAPWLSVPQFGDWDQKG--QLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 62
           D++ + A W  VPQFG WDQKG     +YS+ FSK R NRKQNK  V  +SLG+E+EL+ 
Sbjct: 2   DKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMV 61

Query: 63  SAAPPTTTDPFPTDNHHPYHQSHH-----PPPTRKSILSCFNCCVK 102
           S             NH   H  H      P   +K IL+  NCC++
Sbjct: 62  SV----------RRNHQQLHHRHETQDDDPVMKKKRILTYINCCIR 97

[Close]
BLAST of ClCG01G016140 vs. NCBI nr
Match: gi|449448412|ref|XP_004141960.1| (PREDICTED: uncharacterized protein LOC101206523 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 8.4e-53
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEEL+A
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA 103
            AAPPTTTD FPTDNHHPYHQ+HH PPTRKSILSCFNCCVKA
Sbjct: 61  KAAPPTTTDTFPTDNHHPYHQNHHSPPTRKSILSCFNCCVKA 102

[Close]
BLAST of ClCG01G016140 vs. NCBI nr
Match: gi|659079228|ref|XP_008440144.1| (PREDICTED: uncharacterized protein LOC103484698 isoform X2 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-52
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEEL+A
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIA 60

Query: 61  SAAPPTTTDPFPTDNHHPY-HQSHHPPPTRKSILSCFNCCVKA 103
            AAPPTTTD FPTDNHHPY HQSHHPPPTRKSILSCFNCCVKA
Sbjct: 61  KAAPPTTTDSFPTDNHHPYHHQSHHPPPTRKSILSCFNCCVKA 103

[Close]
BLAST of ClCG01G016140 vs. NCBI nr
Match: gi|659079226|ref|XP_008440143.1| (PREDICTED: uncharacterized protein LOC103484698 isoform X1 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 8.7e-50
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 1 

Query: 5   KEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVASAAP 64
           +EKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEEL+A AAP
Sbjct: 10  REKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIAKAAP 69

Query: 65  PTTTDPFPTDNHHPY-HQSHHPPPTRKSILSCFNCCVKA 103
           PTTTD FPTDNHHPY HQSHHPPPTRKSILSCFNCCVKA
Sbjct: 70  PTTTDSFPTDNHHPYHHQSHHPPPTRKSILSCFNCCVKA 108

[Close]
BLAST of ClCG01G016140 vs. NCBI nr
Match: gi|629088113|gb|KCW54366.1| (hypothetical protein EUGRSUZ_I003201, partial [Eucalyptus grandis])

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           M+DRKEK  PWLSVPQFGDWDQKGQ+PDYSLDFSK+RE RKQNKRDVSRAS+GNEEEL +
Sbjct: 19  MEDRKEKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELAS 78

Query: 61  S-AAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA 103
           S    PT T   P D HH YH+S   PPTR+SILSCFNCCVKA
Sbjct: 79  SKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 117

[Close]
BLAST of ClCG01G016140 vs. NCBI nr
Match: gi|702459523|ref|XP_010027770.1| (PREDICTED: uncharacterized protein LOC104418198 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELVA 60
           M+DRKEK  PWLSVPQFGDWDQKGQ+PDYSLDFSK+RE RKQNKRDVSRAS+GNEEEL +
Sbjct: 1   MEDRKEKNTPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKRDVSRASIGNEEELAS 60

Query: 61  S-AAPPTTTDPFPTDNHHPYHQSHHPPPTRKSILSCFNCCVKA 103
           S    PT T   P D HH YH+S   PPTR+SILSCFNCCVKA
Sbjct: 61  SKTVAPTAT---PDDGHH-YHESDPSPPTRRSILSCFNCCVKA 99

The following BLAST results are available for this feature:
BLAST of ClCG01G016140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ83_CUCSA5.8e-5395.10Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487580 PE=4 SV=1[more]
A0A059AL03_EUCGR7.7e-3775.73Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4... [more]
D7SW64_VITVI2.9e-3676.47Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01630 PE=4 SV=... [more]
M5WKN7_PRUPE6.5e-3673.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013840mg PE=4 SV=1[more]
A0A059ALU6_EUCGR1.9e-3575.00Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I003201 PE=4... [more]
BLAST of ClCG01G016140 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09960.11.7e-3261.82 FUNCTIONS IN: molecular_function unknown[more]
AT5G64850.13.1e-2958.77 FUNCTIONS IN: molecular_function unknown[more]
AT5G19473.16.7e-1641.51 RPM1-interacting protein 4 (RIN4) family protein[more]
BLAST of ClCG01G016140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448412|ref|XP_004141960.1|8.4e-5395.10PREDICTED: uncharacterized protein LOC101206523 [Cucumis sativus][more]
gi|659079228|ref|XP_008440144.1|1.1e-5296.12PREDICTED: uncharacterized protein LOC103484698 isoform X2 [Cucumis melo][more]
gi|659079226|ref|XP_008440143.1|8.7e-5094.95PREDICTED: uncharacterized protein LOC103484698 isoform X1 [Cucumis melo][more]
gi|629088113|gb|KCW54366.1|1.1e-3675.73hypothetical protein EUGRSUZ_I003201, partial [Eucalyptus grandis][more]
gi|702459523|ref|XP_010027770.1|1.1e-3675.73PREDICTED: uncharacterized protein LOC104418198 isoform X2 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G016140.1ClCG01G016140.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33882FAMILY NOT NAMEDcoord: 1..102
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G016140Csa6G487580Cucumber (Chinese Long) v2cuwcgB432
ClCG01G016140Csa2G297140Cucumber (Chinese Long) v2cuwcgB116
ClCG01G016140MELO3C007484Melon (DHL92) v3.5.1mewcgB514
ClCG01G016140MELO3C020960Melon (DHL92) v3.5.1mewcgB084
ClCG01G016140Cla008500Watermelon (97103) v1wcgwmB153
ClCG01G016140Cla97C01G015130Watermelon (97103) v2wcgwmbB089
ClCG01G016140Cla97C02G027420Watermelon (97103) v2wcgwmbB100
ClCG01G016140Bhi03G001537Wax gourdwcgwgoB228
ClCG01G016140Bhi10G001876Wax gourdwcgwgoB222
ClCG01G016140CSPI06G27280Wild cucumber (PI 183967)cpiwcgB453
ClCG01G016140CSPI02G15140Wild cucumber (PI 183967)cpiwcgB123
ClCG01G016140Cucsa.250380Cucumber (Gy14) v1cgywcgB439
ClCG01G016140Cucsa.101650Cucumber (Gy14) v1cgywcgB134
ClCG01G016140CmaCh02G005990Cucurbita maxima (Rimu)cmawcgB521
ClCG01G016140CmaCh07G007590Cucurbita maxima (Rimu)cmawcgB754
ClCG01G016140CmaCh03G010400Cucurbita maxima (Rimu)cmawcgB579
ClCG01G016140CmoCh03G010400Cucurbita moschata (Rifu)cmowcgB575
ClCG01G016140CmoCh02G006020Cucurbita moschata (Rifu)cmowcgB519
ClCG01G016140CmoCh07G007800Cucurbita moschata (Rifu)cmowcgB755
ClCG01G016140Lsi01G010600Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G016140Cp4.1LG19g11780Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G016140Cp4.1LG05g10910Cucurbita pepo (Zucchini)cpewcgB643
ClCG01G016140CsGy6G026660Cucumber (Gy14) v2cgybwcgB399
ClCG01G016140MELO3C020960.2Melon (DHL92) v3.6.1medwcgB082
ClCG01G016140MELO3C007484.2Melon (DHL92) v3.6.1medwcgB509
ClCG01G016140Carg05267Silver-seed gourdcarwcgB0778
ClCG01G016140Carg00897Silver-seed gourdcarwcgB0397
ClCG01G016140CsaV3_6G042410Cucumber (Chinese Long) v3cucwcgB455
ClCG01G016140CsaV3_2G017680Cucumber (Chinese Long) v3cucwcgB131
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG01G016140ClCG02G001020Watermelon (Charleston Gray)wcgwcgB087
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G016140Cucurbita maxima (Rimu)cmawcgB479
ClCG01G016140Cucurbita moschata (Rifu)cmowcgB478
ClCG01G016140Cucumber (Chinese Long) v2cuwcgB538
ClCG01G016140Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G016140Cucumber (Gy14) v2cgybwcgB113