ClCG02G001020 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G001020
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RPM1-interacting protein 4 (RIN4) family protein
Location	CG_Chr02 : 1194724 .. 1198735 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCGTTTTTCCAACCATTCAAACGAACTTCCAAAGGTTTTGAGATCAATCTCATGGAGGATCGAAAGGAGGTAATTCTTCAACTCATGCCTGTGACTTCACTGATTTTCGGTTTCTCTGTTCCGCCAAAAAATGGTGGAAGTTAACGATGATGATTCCGATCTCTTGTTCTTGTTGCCTTTTCTTGAGTAGGAACATTAAGAAAAGCTTAGAGAATGTTCGGAATTGAGTTCATTAACAGCCCAAACTTAGATTCCACAGTTCACTCCTCTTGTTTTATTCACACGTTGAAAATTCTGTAAATATTTTATCATTTTGATGCACTTTCTCGGCAACCAAACTGAAGTTACAGAGTGTTTTTTTTTTTGCTTTTGTACTGTATGAAAACATCGGTTTGCGTAGAACGATTGAAACTTTCCGAGGTTTATTATGTGTTCTCTGTTTTAGCTTCGAAAATTTGAAATTCGACCTTCAATGTTATCTTTTCCCGAATTCTTTGTTGAAGTTCTGCGGTTCCTTCCTTCTGTTGCTTCCGGTCTCTCTTCTTTCAAGTTTCAATTAGTTTCCTCTTCTTCGAAATCAGTTCCTTTCATGTTTCAAATCTTTCGTTATAAATTTTCCCCTTCCATTTCTCGATTATCTGTTGATTTGTTTCTGATGTTACTCCGCTGTCTACATCGAAATTGACGAATTCTAGAGTCCAATCTAGGACTTGAATTGTTAGATATCAGATAAAATCTCAGTATATTTAATGGATGTTGAGGAATTTTGAAGCCTAATGCCGGTAAAATCTTTGTAGCAGATAAGATGGAAAATTGGGGGAATTTTTAAGCAATGCTTCTGTTCTTTCAGATAATTAGGTTATTTCATTCCTACTCACTTTCTCCAGCTAGTTCATCTCAATCGTCAAATCAAACTCCTAGTCCTACTAACAAGTTGGTTCATTATTGATAATGGGCCTGTACCTAAACGCGTAAACATATTAGAAATTACTTGCCTCCATACTTAGCTATTGAGTCAGAATCCATTCTTCAAATTTTAGTTTTATTAAATTGAACCATGAAACCGAGTAAACTAGTAGTATGAATATTTTCCGAGGGAAATCTGTGGTGTATTATTGGACAAGGATGTCTGCTTTTGCTGGTGTATTGAGTAGTTTAGATTTGAATTTGACATTGTGTTTGTAGCCAATTATGATAGTATTGTAATGGGCGCATCTTGAGAGCATAATCTTTTTGCAGTTTACCCAGCCACATCGCAGGAGAAACTTGAAAGATTTTGTTAAAAAAAGAAAAAAGAGTTTGTTATATTTTCAACTATGATTAAACATATAAGAGGTTACGTATGATTAAATATATAGTAAGTTACGGAAAGATGAGTGTAATCCAAGATGTATTCAAATATTTTTGTTTATCTTTATGATTTGATTTTGAATATTGTATTAGAAATAATTTGGAGTAGTAGTTTAAATTATGAAATAGAGAATGGAACTTTTGATGCAGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAGCAGAAGGGAGAGGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAACACAAAAGAGATTTGTCAAGGGCAAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACTACAAACACACCTCATTCTCATGCTGATGAAAATCATCAACTGAATCCCACCAACAGCAACTCCCCAACGGTCAGATTCCTTTCCCTCATTACCTTTCTTTTTTCCTTTTTAATTTTCCAGCTTTTACTTTAAGCATCTCTCCTTTTTCCTCGCGTGTGGGCATGCATGTGATAAAACTGACCCTGCCTCTCAATAATTTATTCAATATGCTATTGTGGGAAAAAATAACATAAAGATCTATCCGTAATGCCACTGGATCTAAAAGTTTTATTCAAGTTAAAATCCTTCTACTTTATACTTTTGAGTTTTGACTAGGAAAGAGAAAACAAAAGAAACGAACAAAGAAAAGAATGAAAAAAAAAAAAAAAAAACTTAGACATTCAAGTCAATATTGAGTTTGTGGGTAACATGACAATAGATAATAATACTATAGTGTTTTCAAAATACTTTGACGAATGACCTACGTCATTTATATATATAGATCTTTAGTCTTACGTAACTAATGCCTTCTTTGTTGTCGAGTTATTACTTGGATGTTTGCACTACCATGGGTCCTACCGAAGTCCTTCATGGGTTGTAGAGTCTTTCATAGGTCCTAAAGAGGTCTTTCATAGATCTTCCAAGGTTCTTAAGGGGATTGTACAGTCTTCCATGATTTTGGTCAATTCTCTTGGATCGGCCTCCTAATGCCGTGACTGACTATGGGTAGGACATAGGTCTTATCAACTTTGGATTAGCCATTTCAGATCTCTATCTCTATTTTTCGATCTCCTATCTTTTCAATTCTTGGTCTTGTCTCATCTCTGCACATCAACCCCCCATAACATATCTCACATTACCGGAGAATTGAAACCTATGACCAATGAAACAAGTCCGAATATCTAACCGGTTAACAATCTAACTTATGTTTCATTTGTTTTATCTTCAGCATGGCCAGACTTAAATGATACATTCCCGACTTCCTAAATTTAGATGAACATTTCCCAAACATATTTTAATCTATTTTATCTTAATGGCTCAAGAGGAATTGACTGTTCAGGATATGAAGAATATTGGGTAGTTATTAAGAACAATCATTAACTCACGTTCTTTTTTTTTCTAAAAAATAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAACTCTACTGGCAGGCAAGTGCCATAATGGGGATTTGTGTTTTATCTAGGGAAAGTAAATTACCGTGCTCAGAATCGATTGGAATAGTGGTCCTTCTACAATATAAGTTTAAATAATATTTTGGTCAAATCTGTTTTACTTTTGTTTTAAACTTTCGAAATATATATGTATGTTGAGATGTCAAAATACCTTGTTTTGATTTTTAAGGCTTTATTTTTTTAATTTAGGCTATTTTTCAAATTTTGCAATTATAGTTTTCATTTTTTCAGAAAAATACTTGAATTTCTTGTTACTTCTAAGAATAAAAACTATTTTTTTTAGTTTTCTAAATTTTCACTCTGGTTTTAAAAATATGATTAGGAAATGAATAATAAACCATAGAAATTTATGTGTAGGAAGAGTGTTTATGAGCCTAATTTTAAAAAATGACAATTAAATAATTATCAAACATGATCTAAATTTTCAAAATTTTTATATTCTAATTTCTAAACTTAAAAAAAAAAAAAGAAAATTGGTTTAGTCTTCCAACTTAAAAGATAAAATTATGTATTTTGATTCTGAACTTTATTTTGTTTTTAAAACTAATGACATAATTATGAGTATGCCTATTAGTATGTTAATACAACTATCATTTCAAGTCATACACATCATAAACAAGTATCTAGCAAGTGAATATCATATAAAAATAATAACAATCTCTCAATTATTTATATATATTGATCATACTCTGAATTATAAAAATAAATAAACAAATAAAATGATAAAATGATGCTTAAACTATAATAATAATTGTTGAATTGAAGTTATTGATTTCTGTATATTCAAATATTACTTTATATAATTATTTGAGTATTTTTATTTTTTATTAAGACATATTGGAATTTGTACCTTACAACTTTTATTTTATGGTATTTTCAGACAAGGAAGAGCATATTGAGCTACTTCAACTGTTGTGTGAAAGCATGATCACAAACTCAAATTCACCAATGTTGATTAATGAATTGATGGTTTCTCTCAAGGTTTTTTCTTTTTTTTCTTCTTCCACATTTGGTTTGTAAGTTGTTATAAGAACATAAGAAACTCCTTTAATTGAAGTCAGATAAATATGTAATCTTTTTTATATCTTTCTCTCAACCTAGTTGATAATTTTTTTTGAAAAAATATAAATGGAACGTTT

mRNA sequence

TCTCTCTCTCTCTCTCTCTCGTTTTTCCAACCATTCAAACGAACTTCCAAAGGTTTTGAGATCAATCTCATGGAGGATCGAAAGGAGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAGCAGAAGGGAGAGGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAACACAAAAGAGATTTGTCAAGGGCAAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACTACAAACACACCTCATTCTCATGCTGATGAAAATCATCAACTGAATCCCACCAACAGCAACTCCCCAACGACAAGGAAGAGCATATTGAGCTACTTCAACTGTTGTGTGAAAGCATGATCACAAACTCAAATTCACCAATGTTGATTAATGAATTGATGGTTTCTCTCAAGGTTTTTTCTTTTTTTTCTTCTTCCACATTTGGTTTGTAAGTTGTTATAAGAACATAAGAAACTCCTTTAATTGAAGTCAGATAAATATGTAATCTTTTTTATATCTTTCTCTCAACCTAGTTGATAATTTTTTTTGAAAAAATATAAATGGAACGTTT

Coding sequence (CDS)

ATGGAGGATCGAAAGGAGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAGCAGAAGGGAGAGGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAACACAAAAGAGATTTGTCAAGGGCAAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACTACAAACACACCTCATTCTCATGCTGATGAAAATCATCAACTGAATCCCACCAACAGCAACTCCCCAACGACAAGGAAGAGCATATTGAGCTACTTCAACTGTTGTGTGAAAGCATGA

Protein sequence

MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA

Homology

[Close]

BLAST of ClCG02G001020 vs. TrEMBL
Match: A0A0A0LJN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297140 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 7.8e-53
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           MEDRKEKVAPWMSVPQFGDWEQKG VPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SSATPTTNTPHSH DENHQLNPTNSNSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATPTTNTPHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]

BLAST of ClCG02G001020 vs. TrEMBL
Match: A0A0L9UD46_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g106300 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           ME  KEK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMA
Sbjct: 1   MEQSKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SS   TTNT HS   ++   +   ++SPTTR+S LSYFNCCVKA
Sbjct: 61  SSTNNTTNTVHSDEHQHQHPHYHQTSSPTTRRSFLSYFNCCVKA 104

[Close]

BLAST of ClCG02G001020 vs. TrEMBL
Match: A0A0A0KJ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487580 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 71/104 (68.27%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           M+DRKEK APW+SVPQFGDW+QKG++PDYS+DFSK+RENRKQ+KRD+SRAS+GNEEEL+A
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKRDVSRASLGNEEELIA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
            +A PTT    +   +NH     N +SP TRKSILS FNCCVKA
Sbjct: 61  KAAPPTTT--DTFPTDNHHPYHQNHHSPPTRKSILSCFNCCVKA 102

[Close]

BLAST of ClCG02G001020 vs. TrEMBL
Match: A0A0S3REV7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G193100 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           ME  KEK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMA
Sbjct: 1   MEQSKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SS   TTNT HS   ++   +   ++SPTTR+S LSYFNCCVKA
Sbjct: 61  SSTNNTTNTVHSDEHQHQHPHYHQTSSPTTRRSFLSYFNCCVKA 104

[Close]

BLAST of ClCG02G001020 vs. TrEMBL
Match: A0A0B2PPG0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_011827 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           ME  KEK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMA
Sbjct: 1   MEQSKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SSAT  T+T HS  D++   +   +NSPTTR+S LSYFNCC+KA
Sbjct: 61  SSATNNTSTVHS--DDHQHPHYHQTNSPTTRRSFLSYFNCCIKA 102

[Close]

BLAST of ClCG02G001020 vs. TAIR10
Match: AT5G09960.1 (AT5G09960.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 2   EDRKEKVAPWMSVPQFGDWEQKG--EVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELM 61
           +DRKEK  PW+SVPQFGDW+QKG   +PDYS+DF+KIRE RKQ+KRD SRAS+GNEEEL+
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 62  --ASSATPTTNTPHSHADENHQLNPTN---SNSPTTRKSILSYFNCCVKA 105
               SAT T       ++   + +P++    +SP+TR+S+ S FNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

[Close]

BLAST of ClCG02G001020 vs. TAIR10
Match: AT5G64850.1 (AT5G64850.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 114.8 bits (286), Expect = 3.2e-26
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MEDRKE-KVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELM 60
           MEDRKE K +PW+SVPQFGDW+QKG   DYS+DFSKIRE RK +KRD SRAS+GNEEEL+
Sbjct: 1   MEDRKENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELI 60

Query: 61  --------ASSATP-TTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
                     +A P    T HS  +  ++ +  + +SP+ R+ I S FNCCVKA
Sbjct: 61  NPFHDQPPVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114

[Close]

BLAST of ClCG02G001020 vs. TAIR10
Match: AT5G19473.1 (AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 80.5 bits (197), Expect = 6.8e-16
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 1


Query: 3   DRKEKVAPWMSVPQFGDWEQKG--EVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 62
           D++ + A W  VPQFG W+QKG  +  +YSV FSK R NRKQ+K  +  +S+G+E+ELM 
Sbjct: 2   DKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMV 61

Query: 63  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVK 104
           S          +H   +H+    + +    +K IL+Y NCC++
Sbjct: 62  S-------VRRNHQQLHHRHETQDDDPVMKKKRILTYINCCIR 97

[Close]

BLAST of ClCG02G001020 vs. NCBI nr
Match: gi|449461437|ref|XP_004148448.1| (PREDICTED: uncharacterized protein LOC101211284 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-52
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           MEDRKEKVAPWMSVPQFGDWEQKG VPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SSATPTTNTPHSH DENHQLNPTNSNSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATPTTNTPHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]

BLAST of ClCG02G001020 vs. NCBI nr
Match: gi|659116098|ref|XP_008457901.1| (PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 2.3e-50
Identity = 98/104 (94.23%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           ME+RKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA
Sbjct: 1   MEERKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SS TPTTNTPHS  DEN QLNPTNSNSPTTRKSIL YFNCCVKA
Sbjct: 61  SSVTPTTNTPHSIVDENRQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]

BLAST of ClCG02G001020 vs. NCBI nr
Match: gi|697096227|ref|XP_009615350.1| (PREDICTED: uncharacterized protein LOC104108076 [Nicotiana tomentosiformis])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           M+DRKEK APW+SVPQFGDW+QKG +PDYS+DFSKIRENRKQ+KRDLSRAS+GNEEEL+ 
Sbjct: 1   MDDRKEKTAPWLSVPQFGDWDQKGVMPDYSMDFSKIRENRKQNKRDLSRASLGNEEELI- 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SS     NT H H+  +  L+   ++SPTTR+SI SYFNCCVKA
Sbjct: 61  SSTNKNANTGHHHSAHSDDLHYHQNHSPTTRRSIFSYFNCCVKA 103

[Close]

BLAST of ClCG02G001020 vs. NCBI nr
Match: gi|951069079|ref|XP_014490030.1| (PREDICTED: uncharacterized protein LOC106752778 [Vigna radiata var. radiata])

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-34
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           ME  KEK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMA
Sbjct: 1   MEQSKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SS T TTNT HS  DE+   +   ++SPTTR+S LSYFNCCVKA
Sbjct: 61  SSTTNTTNTVHS--DEHQHPHYHQTSSPTTRRSFLSYFNCCVKA 102

[Close]

BLAST of ClCG02G001020 vs. NCBI nr
Match: gi|920697640|gb|KOM40865.1| (hypothetical protein LR48_Vigan04g106300 [Vigna angularis])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 1


Query: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60
           ME  KEK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMA
Sbjct: 1   MEQSKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMA 60

Query: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 105
           SS   TTNT HS   ++   +   ++SPTTR+S LSYFNCCVKA
Sbjct: 61  SSTNNTTNTVHSDEHQHQHPHYHQTSSPTTRRSFLSYFNCCVKA 104

The following BLAST results are available for this feature:

BLAST of ClCG02G001020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJN9_CUCSA	7.8e-53	97.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297140 PE=4 SV=1	[more]
A0A0L9UD46_PHAAN	8.1e-34	68.27	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g106300 PE=4 SV=1	[more]
A0A0A0KJ83_CUCSA	8.1e-34	68.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487580 PE=4 SV=1	[more]
A0A0S3REV7_PHAAN	8.1e-34	68.27	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G193100 PE=...	[more]
A0A0B2PPG0_GLYSO	1.1e-33	69.23	Uncharacterized protein OS=Glycine soja GN=glysoja_011827 PE=4 SV=1	[more]

BLAST of ClCG02G001020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09960.1	1.6e-28	56.36	FUNCTIONS IN: molecular_function unknown	[more]
AT5G64850.1	3.2e-26	54.39	FUNCTIONS IN: molecular_function unknown	[more]
AT5G19473.1	6.8e-16	38.83	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of ClCG02G001020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461437\|ref\|XP_004148448.1\|	1.1e-52	97.12	PREDICTED: uncharacterized protein LOC101211284 [Cucumis sativus]	[more]
gi\|659116098\|ref\|XP_008457901.1\|	2.3e-50	94.23	PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo]	[more]
gi\|697096227\|ref\|XP_009615350.1\|	2.3e-34	69.23	PREDICTED: uncharacterized protein LOC104108076 [Nicotiana tomentosiformis]	[more]
gi\|951069079\|ref\|XP_014490030.1\|	4.0e-34	71.15	PREDICTED: uncharacterized protein LOC106752778 [Vigna radiata var. radiata]	[more]
gi\|920697640\|gb\|KOM40865.1\|	1.2e-33	68.27	hypothetical protein LR48_Vigan04g106300 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G001020.1	ClCG02G001020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 102..104 scor
None	No IPR available	PANTHER	PTHR33882	FAMILY NOT NAMED	coord: 1..104 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G001020	Csa2G297140	Cucumber (Chinese Long) v2	cuwcgB124
ClCG02G001020	Csa6G487580	Cucumber (Chinese Long) v2	cuwcgB447
ClCG02G001020	MELO3C020960	Melon (DHL92) v3.5.1	mewcgB094
ClCG02G001020	Cla008500	Watermelon (97103) v1	wcgwmB193
ClCG02G001020	Cla97C02G027420	Watermelon (97103) v2	wcgwmbB138
ClCG02G001020	Cla97C01G015130	Watermelon (97103) v2	wcgwmbB130
ClCG02G001020	Bhi10G001876	Wax gourd	wcgwgoB306
ClCG02G001020	CSPI06G27280	Wild cucumber (PI 183967)	cpiwcgB468
ClCG02G001020	CSPI02G15140	Wild cucumber (PI 183967)	cpiwcgB130
ClCG02G001020	Cucsa.101650	Cucumber (Gy14) v1	cgywcgB135
ClCG02G001020	Cucsa.250380	Cucumber (Gy14) v1	cgywcgB440
ClCG02G001020	CmaCh02G005990	Cucurbita maxima (Rimu)	cmawcgB534
ClCG02G001020	CmaCh03G010400	Cucurbita maxima (Rimu)	cmawcgB581
ClCG02G001020	CmoCh02G006020	Cucurbita moschata (Rifu)	cmowcgB531
ClCG02G001020	CmoCh03G010400	Cucurbita moschata (Rifu)	cmowcgB579
ClCG02G001020	Lsi10G006670	Bottle gourd (USVL1VR-Ls)	lsiwcgB056
ClCG02G001020	Cp4.1LG05g10910	Cucurbita pepo (Zucchini)	cpewcgB664
ClCG02G001020	CsGy6G026660	Cucumber (Gy14) v2	cgybwcgB411
ClCG02G001020	MELO3C020960.2	Melon (DHL92) v3.6.1	medwcgB092
ClCG02G001020	Carg11669	Silver-seed gourd	carwcgB1028
ClCG02G001020	Carg05267	Silver-seed gourd	carwcgB0785
ClCG02G001020	CsaV3_6G042410	Cucumber (Chinese Long) v3	cucwcgB467
ClCG02G001020	CsaV3_2G017680	Cucumber (Chinese Long) v3	cucwcgB139

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG02G001020	ClCG01G016140	Watermelon (Charleston Gray)	wcgwcgB087

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G001020	Cucurbita maxima (Rimu)	cmawcgB482
ClCG02G001020	Cucurbita moschata (Rifu)	cmowcgB480
ClCG02G001020	Watermelon (97103) v1	wcgwmB206
ClCG02G001020	Cucurbita pepo (Zucchini)	cpewcgB066
ClCG02G001020	Cucurbita pepo (Zucchini)	cpewcgB268
ClCG02G001020	Cucumber (Gy14) v2	cgybwcgB121