Lsi10G006670 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G006670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRPM1-interacting protein 4 (RIN4) family protein
Locationchr10 : 9274272 .. 9278621 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCTGTTTAGTTATATTGAGTAGTTTAGATTTCGATTTGACATTGTGTTAGTAGCAAATTGTGATAGTATTATGATTGGTGCATCTTGAGCACACTGCAAAGAAACTTAGAAGATCAAATAGAAGGAGGAAATTGTTATATTGCAGACTGTGGTTGAACAAGTGGGAAGACAGCAAAAATATGAGTGCAACCCACGATGCACTCAAATATTTTTTTTTTTTATGATTTGAATTTGGAATAATGTATTAAAAATGATTTGGAGTGGTGGTTTAAATTATGAAATAGAGAATGAACTTTTGATGCAGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAACAGAAGGGAGAAGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGAAAACAACACAAAAGGGATTTGTCAAGGGCTAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACCACAAACACACCTCATTCCCATGCTGATGAAAATCATCAACTCAATCCCACCAACAGCAACTCCCCAACGGTCAGATTCCTTTCTCTCATTGCCTTTCTTTTCTTTTTTTTCTTCTTTTTTTTTTCTTCCAGCTTTTACTTTACGCATGTCTCCTTTTTCTTCGTGTGTGGGCATGCATGTGATAAAACTGACCCCGCCCCTCAATAATTTATTCAAGGAAAAAATAACATAAAGATGAATCCTTAATGCCACTTGGTCTAAAAGTTTTTTTCAAGTTGAAATCCTTCTCTTACTTCATACTTTTGAGTTTTGACTAGGAAAGAGAAAATAAAAGAAAAAACCAACAAAATAATGAAAAAAACGCACTTCAATGTTCAGGTCAATATTGAGTTTGTGAGTAGCATGATAATAGAAAATAATAGTATAGTGTTTTCAGTATACCTTTGACGAATGACCTACGTCATTTATATATATAGATCTTTAGTTTTATGTAAATAATGGCCATACTTTTATTGCCTTCCTTGTAATTCTTTAAACAGTCGAGTTATTACTCATATGGTTGCACTACCATGAGTCCTACAAAAGTCCTCTATGGATTGCGGGGTCCTTCATGGGTCCTAGAGAGATCCTCCAAGGTTCTCAATCGGATTGTAGGGTCTTTCATGTTTTTGGTCCATTCTCTTGGATCGGCTTCTTAAGGCCATGACTGGCTATGGGTAGGACATAGGTCCTATTGACTTTGGATTAGCCATTTCGAATTTTTTATCTTTGTCCTTGGGTCTCCTATTTCTACAATTTTCAGTCTTGTCTCATCTCTGTAAATCTACCCCCATAACATATCACATTACCAGAGAATTGAAACCTATGACCAAGGAAACAAAGTCGAAAATCTAGCCGGTTAACAATCTATCACCCTAACTTTTAATTCATTTGATTTATATTCAGCATGGCCGGACTTAAATGATACATTCCCGACTTCCTAAATTTAGATGAACCATTTCCCAAACACTTTTATCTAGTTTATCTTAAAGGAGAGGAATTGACTGTTCAGGATATGAATAATATTGGGAAACTATTACAGAACAATTATTAACTCACATTCTCCTTTTCTTTTAAAAATAATAATAATAAAAATAAGAAAGAAAAAAACTCTACTGGCTGGCAAGTGCCATGATGGGGATTTGTGTTTTGTCTAGGGAAAGCAAATTACCGTGTTCAAAATCGATTGGAGTAGTGGTCCTTCTACAATATAAGTTTAAATAATATTTTGGTCAAATATGTTTTATTTTTGTTTTAAACGTTCAAAATTAAAAAAAAAAACTATATAAACATATATATTCTTTTTTGTTTGGAGATGTCAAAATATTTATTTTGATTTTAAGGCTCCATTTTGAAAAAATTTCACTCGGTGATAGACCACTTTCTATATTTGTAAATAGTTTGACTCATTTTTTTATATTCGAAAATAGCGCTATTTTTGGGAAATTTTGCAATTATAATTTTTTAAAAAAAACACTTGAATTTCTTATCCAATTCTAAAAATAAAAATTACTTTTTTGAAAACTACTTTTTATTATTATTATTATGTGTAGGAAAAGTGTTTATGAGCCTAAATTTTGAAAACAAAAAATTAAATAAATATTGAACAAGACCTAAATTTTCTAATTTGTCATATTTTTGTCTCAACTTTAAAAAATTTAGTTTAGTCCTTCCACTTAAAAAAGTTTTTTAAGGATTTTGATTCTTAAGTATGCCTATTAGTATGTTAATAAAATCATCCTTTCGAGTCATATAGATTATAGACAAGTATATAGCAAGTGAATATCATATAAAAATAATATAGCAAGGATCAAGATTGTTATTTTGTAAATTTTAGAAAAGAAAAAAAAGACATTTTGAAAGTTTAAGGACCAAAATGGAACAATATCAAAAGCTTGAAGTTTTAAATTAACAATGTAAAAGTTTAGGGACAAAGTAGAATAAACTTGAAATATATTAATTTTTTTAAAAAAATTGAAATATATTATATTATCCATATTTTTTTTACAAAAATAAATTAAGTTTATAACATGAAAATACTGATTTATCAAATTATCGTTCTTTTTAATATAATCGTGCATTTTAAAATTTCAAATCTAAATCTATATACACTGGAAACATAAAGTGGTTAGTTTTTTAGTTTTCAAACAATATTTGGATTGTAGTATTCAGAAATAGTTTTCAAAAATAAATTTGTCAAAACATATTTTCGTAAAACTTGTGAATAAAAAAAGTAAAACAGAATTGAGATTGCATGTCAAAATATGCCCTAAATTGTTATAGTAAATACATATGTTAATTATAGACATGGAGCATACTGGAATATCTTTTAAAAAAAAAAAAACTTAAAATTATTCTCCAACTTTATCAAGAGCTATAAACTCAAAATTCATAATAGAACATGTTGTACACATTTGTTTTAAAGATCATTTCCATGGTATAAGTGCTCTACTTAAATTAAAGATATACTCACTCATTGATTTATTTTTCATGTAACCATAAATCTAATTAGCATAACTAAATTCTTTTAGTGCATGGAGATACCTCGTACAATGCGACTTATAGTCTGCATTTTAGGTGCAGAATATTTTAGTCTGTGTTATAATAGTTTTGGGGTGCATACTATTTTAGTCTTTGTAAGAAATTGTAAACACGGTAACAAATAGGGAAAGAAAGCATGAATACGATATAATAAACAATGTAACAAAGAGGAAAAGAAAGCATGAGTAGGAAATAGTAAACACAACAACAAATAACAAACACGGTACTAAAGAGGGATTTGAAATAGTAATAATGTAGTTAATTGTAGGTTGTAATAGCTGGAAACACCAACTATTATAATTAGAGCCCCAAATATGGAGTGGATTATAATAGCCTACTCCACCCACTTGATGTTGGGAGCTAAACACCTTAAATATACCCGAATGTAATTTGAAATTCAACTGTAACTTAATTATCATGGATTTTTATAGATAGTAATTTGATGTTGATACATAATCTACTACCATTACATAATCACAGCCATTTAGTGGAATCATATAATAAGATTGTGTTTTTGTTATCATTCATACAAAATGCTTTAATTAAATAGTACAATTTCTGTTTGCTTAATACCCTCTCTTTTATGATAAAGGAGTCAGTGTCACAAAACAATCTTCATGAAAGAGGAAGATAGATAATACCAATAACAATTGTTAAATAAATATATGGTGTTCTTATCCATATTTCTAAAGAAGTATCCTTGAACTTAACAATATATATTATATATTGATCAAACTATAAATTAGAAAAATAAATAAACAAATAAAATTATAAAATGATGCTTAAACTATAATAATAATAATTGTTGAATTGAAGTTATTGATTTATGTATAAGAATTCAAATATTTCTTTATGTTATTGTTGAGTATATTTATTGATTTTTTTAAAAAAGATATATTGAAAGTTGTACCTTACAACTTTTTCTTGTATGGTTTTTCTTTTCAGAGAAGGAAGAGCATATTGAGCTACTTCAACTGTTGTGTGAAAGCATGATCACAAACTCAAATTCACCAATATTGTTGATTAATGAAGTGATGGTTTCTCTCAAGGTTTTTTTTTCACATTTGGTTTGTAAGTTGTTATAAGAACATAAGAAACTCCTTTAATTGAAGTTAGATAAATATGTAATCTTCTTTATATCTTTCTCCCAACCCAGTTGTTAATTTACAAAATAAAAAATAAAAAAGGAATGTTTTTCTAAAACTTTTGCAGGTATGTATTTTTAATGTGTTAAAGGTAGAGAAATTTTCACAGATAGAAAAAATTTCAAACTATTTAC

mRNA sequence

ATGGAGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAACAGAAGGGAGAAGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGAAAACAACACAAAAGGGATTTGTCAAGGGCTAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACCACAAACACACCTCATTCCCATGCTGATGAAAATCATCAACTCAATCCCACCAACAGCAACTCCCCAACGAGAAGGAAGAGCATATTGAGCTACTTCAACTGTTGTGTGAAAGCATGATCACAAACTCAAATTCACCAATATTGTTGATTAATGAAGTGATGGTTTCTCTCAAGGTTTTTTTTTCACATTTGGTTTGTAAGTTGTTATAAGAACATAAGAAACTCCTTTAATTGAAGTTAGATAAATATGTAATCTTCTTTATATCTTTCTCCCAACCCAGTTGTTAATTTACAAAATAAAAAATAAAAAAGGAATGTTTTTCTAAAACTTTTGCAGGTATGTATTTTTAATGTGTTAAAGGTAGAGAAATTTTCACAGATAGAAAAAATTTCAAACTATTTAC

Coding sequence (CDS)

ATGGAGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAACAGAAGGGAGAAGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGAAAACAACACAAAAGGGATTTGTCAAGGGCTAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACCACAAACACACCTCATTCCCATGCTGATGAAAATCATCAACTCAATCCCACCAACAGCAACTCCCCAACGAGAAGGAAGAGCATATTGAGCTACTTCAACTGTTGTGTGAAAGCATGA

Protein sequence

MEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATPTTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA
Homology
[Close]
BLAST of Lsi10G006670 vs. TrEMBL
Match: A0A0A0LJN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297140 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 4.7e-47
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EKVAPWMSVPQFGDWEQKG VPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP
Sbjct: 6   EKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
           TTNTPHSH DENHQLNPTNSNSPT RKSIL YFNCCVKA
Sbjct: 66  TTNTPHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of Lsi10G006670 vs. TrEMBL
Match: A0A0S3REV7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G193100 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMASS   
Sbjct: 6   EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASSTNN 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
           TTNT HS   ++   +   ++SPT R+S LSYFNCCVKA
Sbjct: 66  TTNTVHSDEHQHQHPHYHQTSSPTTRRSFLSYFNCCVKA 104

[Close]
BLAST of Lsi10G006670 vs. TrEMBL
Match: V7AZC3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G139200g PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 69/99 (69.70%), Postives = 82/99 (82.83%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMASS T 
Sbjct: 6   EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASSTTN 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
            TNT HS  DE+   +   ++SPT R+S LSYFNCCVKA
Sbjct: 66  NTNTVHS--DEHQHPHYHQTSSPTTRRSFLSYFNCCVKA 102

[Close]
BLAST of Lsi10G006670 vs. TrEMBL
Match: I1KBC1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G146800 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMASSAT 
Sbjct: 6   EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASSATN 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
            T+T HS  D++   +   +NSPT R+S LSYFNCC+KA
Sbjct: 66  NTSTVHS--DDHQHPHYHQTNSPTTRRSFLSYFNCCIKA 102

[Close]
BLAST of Lsi10G006670 vs. TrEMBL
Match: A0A0B2PPG0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_011827 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMASSAT 
Sbjct: 6   EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASSATN 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
            T+T HS  D++   +   +NSPT R+S LSYFNCC+KA
Sbjct: 66  NTSTVHS--DDHQHPHYHQTNSPTTRRSFLSYFNCCIKA 102

[Close]
BLAST of Lsi10G006670 vs. TAIR10
Match: AT5G09960.1 (AT5G09960.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKG--EVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELM--AS 61
           EK  PW+SVPQFGDW+QKG   +PDYS+DF+KIRE RKQ+KRD SRAS+GNEEEL+    
Sbjct: 7   EKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELIKPPE 66

Query: 62  SATPTTNTPHSHADENHQLNPTN---SNSPTRRKSILSYFNCCVKA 101
           SAT T       ++   + +P++    +SP+ R+S+ S FNCCVKA
Sbjct: 67  SATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

[Close]
BLAST of Lsi10G006670 vs. TAIR10
Match: AT5G64850.1 (AT5G64850.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = 1 

Query: 3   KVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELM------- 62
           K +PW+SVPQFGDW+QKG   DYS+DFSKIRE RK +KRD SRAS+GNEEEL+       
Sbjct: 8   KNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELINPFHDQP 67

Query: 63  -ASSATP-TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
              +A P    T HS  +  ++ +  + +SP+RR+ I S FNCCVKA
Sbjct: 68  PVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114

[Close]
BLAST of Lsi10G006670 vs. TAIR10
Match: AT5G19473.1 (AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-13
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 1 

Query: 5   APWMSVPQFGDWEQKG--EVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATPT 64
           A W  VPQFG W+QKG  +  +YSV FSK R NRKQ+K  +  +S+G+E+ELM S     
Sbjct: 8   AAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMVS----- 67

Query: 65  TNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVK 100
                +H   +H+    + +   ++K IL+Y NCC++
Sbjct: 68  --VRRNHQQLHHRHETQDDDPVMKKKRILTYINCCIR 97

[Close]
BLAST of Lsi10G006670 vs. NCBI nr
Match: gi|449461437|ref|XP_004148448.1| (PREDICTED: uncharacterized protein LOC101211284 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 6.7e-47
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EKVAPWMSVPQFGDWEQKG VPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP
Sbjct: 6   EKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
           TTNTPHSH DENHQLNPTNSNSPT RKSIL YFNCCVKA
Sbjct: 66  TTNTPHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of Lsi10G006670 vs. NCBI nr
Match: gi|659116098|ref|XP_008457901.1| (PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASS TP
Sbjct: 6   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSVTP 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
           TTNTPHS  DEN QLNPTNSNSPT RKSIL YFNCCVKA
Sbjct: 66  TTNTPHSIVDENRQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of Lsi10G006670 vs. NCBI nr
Match: gi|951069079|ref|XP_014490030.1| (PREDICTED: uncharacterized protein LOC106752778 [Vigna radiata var. radiata])

HSP 1 Score: 138.3 bits (347), Expect = 7.5e-30
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMASS T 
Sbjct: 6   EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASSTTN 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
           TTNT HS  DE+   +   ++SPT R+S LSYFNCCVKA
Sbjct: 66  TTNTVHS--DEHQHPHYHQTSSPTTRRSFLSYFNCCVKA 102

[Close]
BLAST of Lsi10G006670 vs. NCBI nr
Match: gi|920697640|gb|KOM40865.1| (hypothetical protein LR48_Vigan04g106300 [Vigna angularis])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMASS   
Sbjct: 6   EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASSTNN 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
           TTNT HS   ++   +   ++SPT R+S LSYFNCCVKA
Sbjct: 66  TTNTVHSDEHQHQHPHYHQTSSPTTRRSFLSYFNCCVKA 104

[Close]
BLAST of Lsi10G006670 vs. NCBI nr
Match: gi|593328330|ref|XP_007137592.1| (hypothetical protein PHAVU_009G139200g [Phaseolus vulgaris])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 69/99 (69.70%), Postives = 82/99 (82.83%), Query Frame = 1 

Query: 2   EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATP 61
           EK APW+SVPQFGDW+QKG+VPDYS+DFSKIRE RKQ+K ++SRAS+GNEEELMASS T 
Sbjct: 6   EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASSTTN 65

Query: 62  TTNTPHSHADENHQLNPTNSNSPTRRKSILSYFNCCVKA 101
            TNT HS  DE+   +   ++SPT R+S LSYFNCCVKA
Sbjct: 66  NTNTVHS--DEHQHPHYHQTSSPTTRRSFLSYFNCCVKA 102

The following BLAST results are available for this feature:
BLAST of Lsi10G006670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G006670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJN9_CUCSA4.7e-4795.96Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297140 PE=4 SV=1[more]
A0A0S3REV7_PHAAN2.0e-2967.68Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G193100 PE=... [more]
V7AZC3_PHAVU2.0e-2969.70Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G139200g PE=4 SV=1[more]
I1KBC1_SOYBN2.0e-2968.69Uncharacterized protein OS=Glycine max GN=GLYMA_06G146800 PE=4 SV=1[more]
A0A0B2PPG0_GLYSO2.0e-2968.69Uncharacterized protein OS=Glycine soja GN=glysoja_011827 PE=4 SV=1[more]
BLAST of Lsi10G006670 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09960.11.1e-2354.72 FUNCTIONS IN: molecular_function unknown[more]
AT5G64850.11.2e-2253.27 FUNCTIONS IN: molecular_function unknown[more]
AT5G19473.11.4e-1340.21 RPM1-interacting protein 4 (RIN4) family protein[more]
BLAST of Lsi10G006670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461437|ref|XP_004148448.1|6.7e-4795.96PREDICTED: uncharacterized protein LOC101211284 [Cucumis sativus][more]
gi|659116098|ref|XP_008457901.1|4.8e-4593.94PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo][more]
gi|951069079|ref|XP_014490030.1|7.5e-3070.71PREDICTED: uncharacterized protein LOC106752778 [Vigna radiata var. radiata][more]
gi|920697640|gb|KOM40865.1|2.8e-2967.68hypothetical protein LR48_Vigan04g106300 [Vigna angularis][more]
gi|593328330|ref|XP_007137592.1|2.8e-2969.70hypothetical protein PHAVU_009G139200g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G006670.1Lsi10G006670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33882FAMILY NOT NAMEDcoord: 2..100
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G006670Csa2G297140Cucumber (Chinese Long) v2culsiB093
Lsi10G006670CSPI02G15140Wild cucumber (PI 183967)cpilsiB091
Lsi10G006670Cucsa.250380Cucumber (Gy14) v1cgylsiB409
Lsi10G006670CmaCh02G005990Cucurbita maxima (Rimu)cmalsiB551
Lsi10G006670CmaCh03G010400Cucurbita maxima (Rimu)cmalsiB592
Lsi10G006670CmoCh02G006020Cucurbita moschata (Rifu)cmolsiB536
Lsi10G006670CmoCh03G010400Cucurbita moschata (Rifu)cmolsiB577
Lsi10G006670MELO3C020960Melon (DHL92) v3.5.1lsimeB054
Lsi10G006670ClCG02G001020Watermelon (Charleston Gray)lsiwcgB056
Lsi10G006670MELO3C007484.2Melon (DHL92) v3.6.1lsimedB084
Lsi10G006670MELO3C020960.2Melon (DHL92) v3.6.1lsimedB060
Lsi10G006670Cla97C02G027420Watermelon (97103) v2lsiwmbB053
Lsi10G006670Cla97C01G015130Watermelon (97103) v2lsiwmbB037
Lsi10G006670Bhi10G001876Wax gourdlsiwgoB072
Lsi10G006670Cp4.1LG05g10910Cucurbita pepo (Zucchini)cpelsiB593
Lsi10G006670CsGy6G026660Cucumber (Gy14) v2cgyblsiB385
Lsi10G006670Carg11669Silver-seed gourdcarlsiB967
Lsi10G006670CsaV3_2G017680Cucumber (Chinese Long) v3cuclsiB106
Lsi10G006670CsaV3_6G042410Cucumber (Chinese Long) v3cuclsiB447
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G006670Silver-seed gourdcarlsiB965
Lsi10G006670Cucurbita maxima (Rimu)cmalsiB508
Lsi10G006670Cucurbita moschata (Rifu)cmolsiB492
Lsi10G006670Cucurbita pepo (Zucchini)cpelsiB222
Lsi10G006670Watermelon (97103) v1lsiwmB066
Lsi10G006670Cucumber (Gy14) v2cgyblsiB086