Cla021824 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021824
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Signal recognition particle protein (AHRD V1 **** C1BYZ4_ESOLU); contains Interpro domain(s) IPR002778 Signal recognition particle, SRP19 subunit
Location	Chr5 : 6626639 .. 6628800 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGGTTTTCTAGCAATCATTTTTCCTTGATAAAGATCTTACCTTCCTTTTAATTTTTGTTCTCCCTGCTGCCTGTTTGTGTTGAAGTTAGCTGCAGCCTGCATTGAGTTTATGTGAGCCTGTGATAATTGATAGAATGTGTTAATTGGATTGTTTTCTTATATTATTAGGGAAATCAAAATTTCAATTTAAATTCAAGAATCATTTAGGTCGTATATGGTAACAAATTTGTTTTTAGTTATGCTTTTGAAATTTATGCTTGTTTTCTCCCAATTTATTTACCATGGTTTTCATTTTTATTAAAGAAACATTTTAATTCTTTGTCTAAATCTAAAAACAAAAACTAAGTTTAAAAAGAAATACTATTTTTAGTTTTTGAAACTTGACTTGATTTTTGAAAACGTTGGTAGAAAGTGGACAACGTAGCATACAAATTTAGAGCTGAATATAGAGTTTTGAAGCTTAATTTTCAAAATCCAAAAACCAAATGATTATCAAATCGGGCCCGATGAATTCACAACCAATTGCTATAAAGTTAATGTTCCCATTTATCCTAAATTTTTGCTTTTGTGACTGAAAATCCACATTCTTTTTTATTTTCAATAGAAGAACAAAGCAAAGTTTTTTGGTTTATATTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCTGCAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGGACGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTTTGATTGTCTCTTGAAAAAGATTTCTTTTGAATCTTTCTTGTTCCAAATGAGATATATAATTTAAAATCCTTTTTGGAATTTCAAATTATAGGATTTAATATTATTTCTTGAACTTTTTTGGTTCCAAATGGAAGGTAAAGTTTCAAGTAGTTGTCCTGGGAGAATGGCCGGTATGCGCAAGCTCACCTAGACACATACACTTATTATTATTATTATTATTTTGGAAGAAAAAACAGTGTATTATTGCATAGTATTTTGGTCATTGCATCAAGCTTCTTGAATTTTGCCTTGTATAAAATAAATTTAACTGTATGGTGAAGTAGATTTATAAAGATGAAATTGGTCCATAAAGAAACATTGGAGGCTAGACAAAAAGGAGAGGAGCTCCCTGAGGCTGAATCCTTCTACCCACTAATAGACAATAGTGAAAAAGTTGTCCATTCTTCATCAACAAATCCATAATAAACTACAAACCCAAACATATACGTACTTATTAGAAAATTGTTCTTCTAAATAATTTCTTTCAACATTTATCCCATTTATTAAAAAGAGGATTTGTCCTCCAGTTTGATTGAAACATCCTGAGTATTCTGTTTGAATTTCATTTCAAATCCAAAGTAGTAACAACACAGGTCTCTTCGGAATGAAACAAATTCCCAGTTCCCACCTGCCTTGGGCCTTTGATTTTGAGCCCTCCAGACTATCTTTCACAGAACATATTGAGTACTTGTAGTGATGATTTGTGGATGTGGGATTCTGCTAAAACTATATTTTAAACTCTACTGCTTGATTAACCAAAAAAATGTGTTGAATATTTTAAAATCTTATTGGACCCTGAATTGAAAATACCTAACCTTATTAAACACAAAGTTGAAAGCTTGCGGAACTATTTTACACAACACAAGCTTAAAAGTTGAAGGACTAAATTTGTAATTTAACCTAAATGTTCCAAAATTCCCCTCAAAGTTCTTAGTATCAATAAAAATACCCTAATCTTCACAATTTTACATATGAAATATCTGGCTATATTGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCCTCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG

mRNA sequence

ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGGACGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCCTCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG

Coding sequence (CDS)

ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGGACGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCCTCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG

Protein sequence

MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

Homology

[Close]

BLAST of Cla021824 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-51
Identity = 102/145 (70.34%), Postives = 113/145 (77.93%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE----- 120
           DKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +IAELVPRHP R KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAAGPSK-GKGGRKKK 136
                A++ST+   SK GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]

BLAST of Cla021824 vs. Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.7e-51
Identity = 95/129 (73.64%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 7   NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPR 66
           +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGPS 126
           DF Q GRVRVQLKK+DG+  NPAI ++KQLM++IAELVP+H GRTKKQEPA+SST AG S
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASST-AGTS 128

Query: 127 KGKGGRKKK 136
           KGKGG+KKK
Sbjct: 129 KGKGGKKKK 136

[Close]

BLAST of Cla021824 vs. Swiss-Prot
Match: SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-25
Identity = 65/130 (50.00%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGP 129
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 SKGKGGRKKK 136
              KG  KKK
Sbjct: 134 GSKKGKGKKK 143

[Close]

BLAST of Cla021824 vs. Swiss-Prot
Match: SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-25
Identity = 65/130 (50.00%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGP 129
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 SKGKGGRKKK 136
              KG  KKK
Sbjct: 134 GSKKGKGKKK 143

[Close]

BLAST of Cla021824 vs. Swiss-Prot
Match: SRP19_MOUSE (Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-25
Identity = 65/131 (49.62%), Postives = 81/131 (61.83%), Query Frame = 1


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS--STAA 129
           RD   RGRVRVQLK+EDG+L      SRK +ML +AE++P+   RT+K   A        
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKGGRKK 135
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cla021824 vs. TrEMBL
Match: A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.5e-69
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAAGPSKGKGGRKKK 136
           T AGPSKGKGGRKKK
Sbjct: 188 T-AGPSKGKGGRKKK 201

[Close]

BLAST of Cla021824 vs. TrEMBL
Match: B9IEE2_POPTR (Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPTR_0015s04780g PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.8e-60
Identity = 113/135 (83.70%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+WVVLYP+YINSKKTIAEGRRI V KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGGVPNIKKWVVLYPVYINSKKTIAEGRRISVEKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRV LK+EDG+LSNPAI SRKQLML +AELVPRHPGRTKKQEPAS+S
Sbjct: 62  DKAYPRDFMQVGRVRVLLKREDGSLSNPAIPSRKQLMLHVAELVPRHPGRTKKQEPASTS 121

Query: 121 TAAGPSKGKGGRKKK 136
            AA    GKGG+KK+
Sbjct: 122 NAATSKSGKGGKKKR 136

[Close]

BLAST of Cla021824 vs. TrEMBL
Match: A0A067JVS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-59
Identity = 116/136 (85.29%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+W+VLYPIYINSKKTIAEGRRI  +KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI +RKQLML IAELVPRHPGRTKKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 TAAGPSK-GKGGRKKK 136
             AGPSK GKGGRKK+
Sbjct: 122 -GAGPSKSGKGGRKKR 136

[Close]

BLAST of Cla021824 vs. TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-59
Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIK+W+V YP+YINSKKTIAEGRR+  SKACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 78  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 137

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTL NPAI+SRK+LM  +AELVPRHPGR KKQEPAS+S
Sbjct: 138 DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 197

Query: 121 TAAGPSKGKGGRKKK 136
                  GKGG+KK+
Sbjct: 198 NTGSSKSGKGGKKKR 212

[Close]

BLAST of Cla021824 vs. TrEMBL
Match: A0A0B0MZ83_GOSAR (Signal recognition particle 19 kDa-like protein OS=Gossypium arboreum GN=F383_13123 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.2e-59
Identity = 113/137 (82.48%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           M+GE+PNIK+WVV YP+YINSKKT+AEGRRI ++KACENPTCAEI DCC+HLK+P AIEI
Sbjct: 1   MNGEVPNIKKWVVFYPVYINSKKTVAEGRRISLAKACENPTCAEIADCCNHLKVPNAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE-PASS 120
           DKAYPRDFMQRGRVRVQLKKEDGTL NPAI+SRKQLML++AELVPRHPGRTKKQE P++S
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLWNPAISSRKQLMLQVAELVPRHPGRTKKQEAPSTS 120

Query: 121 STAAGPSK-GKGGRKKK 136
           S AAG SK GKGGRKK+
Sbjct: 121 SAAAGSSKPGKGGRKKR 137

[Close]

BLAST of Cla021824 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-69
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAAGPSKGKGGRKKK 136
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

[Close]

BLAST of Cla021824 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 5.0e-69
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAAGPSKGKGGRKKK 136
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

[Close]

BLAST of Cla021824 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 5.0e-69
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAAGPSKGKGGRKKK 136
           T AGPSKGKGGRKKK
Sbjct: 188 T-AGPSKGKGGRKKK 201

[Close]

BLAST of Cla021824 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 8.5e-69
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAAGPSKGKGGRKKK 136
           + AGPSKGKGGRKKK
Sbjct: 121 STAGPSKGKGGRKKK 135

[Close]

BLAST of Cla021824 vs. NCBI nr
Match: gi|1009137619|ref|XP_015886153.1| (PREDICTED: signal recognition particle 19 kDa protein [Ziziphus jujuba])

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60
Identity = 113/135 (83.70%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG++PNIK+WVV YP+YINSKKTIAEGRRI +SKACENPTCAEIGDCCSH KLPFAIEI
Sbjct: 1   MDGDVPNIKKWVVFYPVYINSKKTIAEGRRICLSKACENPTCAEIGDCCSHFKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRV LKKEDGTL NPAI+SRKQLMLR+AELVPRHPGR KKQEPAS+S
Sbjct: 61  DKAYPRDFMQIGRVRVLLKKEDGTLYNPAISSRKQLMLRVAELVPRHPGRAKKQEPASTS 120

Query: 121 TAAGPSKGKGGRKKK 136
           TA     GKGG+KK+
Sbjct: 121 TAGSSKSGKGGKKKR 135

The following BLAST results are available for this feature:

BLAST of Cla021824 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRP19_ARATH	2.1e-51	70.34	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1...	[more]
SRP19_ORYSJ	4.7e-51	73.64	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SR...	[more]
SRP19_PONAB	2.6e-25	50.00	Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2	[more]
SRP19_HUMAN	2.6e-25	50.00	Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3	[more]
SRP19_MOUSE	5.7e-25	49.62	Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1	[more]

BLAST of Cla021824 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5F9_CUCSA	3.5e-69	98.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1	[more]
B9IEE2_POPTR	3.8e-60	83.70	Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPT...	[more]
A0A067JVS4_JATCU	1.9e-59	85.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1	[more]
D7T671_VITVI	4.2e-59	80.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=...	[more]
A0A0B0MZ83_GOSAR	7.2e-59	82.48	Signal recognition particle 19 kDa-like protein OS=Gossypium arboreum GN=F383_13...	[more]

BLAST of Cla021824 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077020\|ref\|XP_008438988.1\|	1.7e-69	98.52	PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]	[more]
gi\|449459788\|ref\|XP_004147628.1\|	5.0e-69	98.52	PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus]	[more]
gi\|700202067\|gb\|KGN57200.1\|	5.0e-69	98.52	hypothetical protein Csa_3G171080 [Cucumis sativus]	[more]
gi\|449460339\|ref\|XP_004147903.1\|	8.5e-69	96.30	PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus]	[more]
gi\|1009137619\|ref\|XP_015886153.1\|	1.9e-60	83.70	PREDICTED: signal recognition particle 19 kDa protein [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002778	Signal_recog_particle_SRP19

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008312	7S RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0048500	signal recognition particle

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
biological_process	GO:0006617	SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component	GO:0048500	signal recognition particle
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
molecular_function	GO:0008312	7S RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU31942	watermelon EST collection version 2.0	transcribed_cluster
WMU65032	watermelon EST collection version 2.0	transcribed_cluster
WMU68636	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021824	Cla021824.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU31942	WMU31942	transcribed_cluster
WMU65032	WMU65032	transcribed_cluster
WMU68636	WMU68636	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002778	Signal recognition particle, SRP19 subunit	GENE3D	G3DSA:3.30.56.30		coord: 5..117 score: 1.6
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 1..135 score: 1.1
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 13..106 score: 1.1
IPR002778	Signal recognition particle, SRP19 subunit	unknown	SSF69695	SRP19	coord: 6..109 score: 3.27

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021824	Cla97C05G088450	Watermelon (97103) v2	wmwmbB206
Cla021824	Csa3G171080	Cucumber (Chinese Long) v2	cuwmB233
Cla021824	MELO3C006747	Melon (DHL92) v3.5.1	mewmB461
Cla021824	ClCG05G006830	Watermelon (Charleston Gray)	wcgwmB286
Cla021824	CSPI03G15310	Wild cucumber (PI 183967)	cpiwmB231
Cla021824	Cucsa.252210	Cucumber (Gy14) v1	cgywmB479
Cla021824	CmaCh14G015620	Cucurbita maxima (Rimu)	cmawmB242
Cla021824	CmoCh14G015980	Cucurbita moschata (Rifu)	cmowmB231
Cla021824	Lsi05G013910	Bottle gourd (USVL1VR-Ls)	lsiwmB366
Cla021824	Cp4.1LG03g12000	Cucurbita pepo (Zucchini)	cpewmB613
Cla021824	CsGy3G015380	Cucumber (Gy14) v2	cgybwmB217
Cla021824	MELO3C006747.2	Melon (DHL92) v3.6.1	medwmB447
Cla021824	Carg19599	Silver-seed gourd	carwmB0269
Cla021824	CsaV3_3G015480	Cucumber (Chinese Long) v3	cucwmB239
Cla021824	Bhi01G000814	Wax gourd	wgowmB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021824	Silver-seed gourd	carwmB0070
Cla021824	Silver-seed gourd	carwmB0738
Cla021824	Watermelon (97103) v2	wmwmbB217
Cla021824	Wax gourd	wgowmB067
Cla021824	Cucurbita maxima (Rimu)	cmawmB798
Cla021824	Cucurbita moschata (Rifu)	cmowmB341
Cla021824	Cucurbita moschata (Rifu)	cmowmB793
Cla021824	Watermelon (Charleston Gray)	wcgwmB332
Cla021824	Cucurbita pepo (Zucchini)	cpewmB152
Cla021824	Cucurbita pepo (Zucchini)	cpewmB845
Cla021824	Melon (DHL92) v3.6.1	medwmB094