WMU68636 (transcribed_cluster) Watermelon (97103) v1

NameWMU68636
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSignal recognition particle 19 kDa protein
LocationChr5 : 6627840 .. 6628709 (-)
Sequence length187
The following sequences are available for this feature:

transcribed_cluster sequence

AGAGTGGTCCTATTTACGGTCCGGGAGGTGTTAGCAAAAGCATGTGAGAATCCAACCTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAAGCATATCCTCGTGATTTCATGCAAAAGAGGGAGAGTGCGGATCCAGCTGAAGAAGGAGGACGGAAC
BLAST of WMU68636 vs. TAIR10
Match: AT1G48160.1 (AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-08
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1

Query: 31  LAKACENPTCAEIGDCCSHLKLPFAIEIDKS 90
           ++K+CENP C EI DCC HLKLP A+EIDK+
Sbjct: 33  VSKSCENPNCIEISDCCKHLKLPSAVEIDKA 63

Query: 91  124
           
Sbjct: 93  63

BLAST of WMU68636 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1

Query: 31  LAKACENPTCAEIGDCCSHLKLPFAIEIDKS 90
           ++K+CENP C EI DCC HLKLP A+EIDK+
Sbjct: 33  VSKSCENPNCIEISDCCKHLKLPSAVEIDKA 63

Query: 91  124
           
Sbjct: 93  63

BLAST of WMU68636 vs. Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-07
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1

Query: 37  KACENPTCAEIGDCCSHLKLPFAIEIDKS 96
           KAC +PTC EI DCCSHLK+P AIE+DK+
Sbjct: 37  KACPDPTCVEIADCCSHLKIPHAIELDKA 65

Query: 97  124
           
Sbjct: 97  65

BLAST of WMU68636 vs. NCBI nr
Match: gi|1009137619|ref|XP_015886153.1| (PREDICTED: signal recognition particle 19 kDa protein [Ziziphus jujuba])

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-09
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1

Query: 22  REVLAKACENPTCAEIGDCCSHLKLPFAIEIDKS 81
           R  L+KACENPTCAEIGDCCSH KLPFAIEIDK+
Sbjct: 30  RICLSKACENPTCAEIGDCCSHFKLPFAIEIDKA 63

Query: 82  124
           
Sbjct: 90  63

BLAST of WMU68636 vs. NCBI nr
Match: gi|950930855|ref|XP_014505520.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Vigna radiata var. radiata])

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-09
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1

Query: 22  REVLAKACENPTCAEIGDCCSHLKLPFAIEIDKS 81
           R  +AKACENPTCAEIGDCCS+LKLPFAIEIDK+
Sbjct: 30  RIAVAKACENPTCAEIGDCCSYLKLPFAIEIDKA 63

Query: 82  124
           
Sbjct: 90  63

BLAST of WMU68636 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-09
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 1

Query: 31  LAKACENPTCAEIGDCCSHLKLPFAIEIDKS 90
           ++KACENPTCAEIGDCCSHLKLPFAIEIDK+
Sbjct: 33  VSKACENPTCAEIGDCCSHLKLPFAIEIDKA 63

Query: 91  124
           
Sbjct: 93  63

BLAST of WMU68636 vs. NCBI nr
Match: gi|920715770|gb|KOM55858.1| (hypothetical protein LR48_Vigan10g175000 [Vigna angularis])

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-09
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1

Query: 22  REVLAKACENPTCAEIGDCCSHLKLPFAIEIDKS 81
           R  +AKACENPTCAEIGDCCS+LKLPFAIEIDK+
Sbjct: 30  RIAVAKACENPTCAEIGDCCSYLKLPFAIEIDKA 63

Query: 82  124
           
Sbjct: 90  63

BLAST of WMU68636 vs. NCBI nr
Match: gi|1012354091|gb|KYP65278.1| (Signal recognition particle 19 kDa protein [Cajanus cajan])

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-09
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 1

Query: 31  LAKACENPTCAEIGDCCSHLKLPFAIEIDKS 90
           LAKACENPTCAEIGDCCS+LKLPFAIEIDK+
Sbjct: 34  LAKACENPTCAEIGDCCSYLKLPFAIEIDKA 64

Query: 91  124
           
Sbjct: 94  64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G48160.12.4e-0867.74 signal recognition particle 19 kDa protein, putative / SRP19, putati... [more]
Match NameE-valueIdentityDescription
SRP19_ARATH4.2e-0767.74Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1... [more]
SRP19_ORYSJ7.2e-0772.41Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SR... [more]
Match NameE-valueIdentityDescription
gi|1009137619|ref|XP_015886153.1|4.5e-0985.29PREDICTED: signal recognition particle 19 kDa protein [Ziziphus jujuba][more]
gi|950930855|ref|XP_014505520.1|5.9e-0985.29PREDICTED: signal recognition particle 19 kDa protein-like [Vigna radiata var. r... [more]
gi|449459788|ref|XP_004147628.1|5.9e-0990.32PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus][more]
gi|920715770|gb|KOM55858.1|5.9e-0985.29hypothetical protein LR48_Vigan10g175000 [Vigna angularis][more]
gi|1012354091|gb|KYP65278.1|5.9e-0993.55Signal recognition particle 19 kDa protein [Cajanus cajan][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021824Cla021824gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0187356S2_0187356EST