CmoCh14G015980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G015980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSignal recognition particle 19 kDa family protein
LocationCmo_Chr14 : 12660947 .. 12663691 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAATCCCTTCTGTCTTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCGCCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGTAATCGTATTTAGTTGATTCTTGGTATAGTGGATTTGTAACTTGTTTCATACGATCTTGTGTTTTAGGATGTTTACATCTTCTTTGGGATTGTTTCTCTCTTCTTATACTGAAGCTCATTGGCAGTAATTGGCATAGCATATGAAGAATTTGTTCACTTTTTTGTCATTTTGATTGCAATGATCACATAAATGAGCTTTATCCAGCTAGGAATTTGTTAAGTAGTTGAAATCCTGTTCAATTAGGTGCTTTCTGATTGCTAGACTGTTATACTTCTTTAGTAGTATGAATCTTCAATCGGCGGATCAGACAAAGAAAATCGGGTCAAATTTAATCAAATATTAGGAACTTAAAGTCAAATTCAAACTTCACTTCATTTTCTTTCGGCAAATTTTAGAATATCCTTGTTTGGAACTAGAATTTATTGAATGAAATGGATTATTGATAAATTTACTTGAAGTGTTGATTTTCTTTCATCATGCTTTGCAATGTATTTGCAAATGTGGGGGAATTGGACGGTTTGTTTATTTCAACTTTGTCTTGCCTTTGTCTCAACGTTGCATTTTCTCGATATTTTGTTCCCCCTTTATTTTCCATAGATGTACTGTTTGAACATGTTTATGTATAGCATATGGAAAATGATTAACAAAACTTTGTTGTTATTATTGGATACTGTGGTGTTAAATTTTCAATTTTATTGTTTGAGGTGGTGGTTATATTAATGGCCTAAAATTGTAGAACATTAAGGTGTCCTAGCTTTCCTTTCTATAAATTGTTGGAAATTTCACTCAAGTTTTCAATTCATAATGTCCCAATTTGAGACTGTATGAAGAATATATTTCTGTCAGATAACCAAAAACTGAATTGAGTTGAACAGTTTCTTGTCGAGGGAACATTCGTACTAATGTCTGAAGAATATATTTTGTTTTGCCCTATACTGATTGGATATGCATTATGATAGAAATTTTTTATATGCTATTATAGGAATCTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGGTTTTCTGGCAATGATCTGTCATTGATTAAATCTTCCCTTCCTATTAATTTTTGTTCTCCCTGCTGTTTGTTTAGATTGAAGTTAGCTGCATCCTGCGTTGAGTTTATAAGAGCCTATGATCATTGATAGAATACGTTAATTCATGTTCAGAGCATTCCTGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGTAAGGCTTATGCTTGTCTCTTTGGACCCGTTTTATCCCTTGGGAAAAGGCAGTTGTCTGTTTCCGATTAATATTGAAATAGTTGTCTGTTTTTCATTAATAAAGCTATAATAAGCTATGAATCAAACATATACTTATTTTCATTCAACACCTTTGCGAAAATGAGAACTTGCCCTCCAGTTTGATTGAAACACCTATGTCTTGTAGGAAGCATAGAATCAATTTGAGAATTCTGTTTGAAGCTCATTTCAAATCCAAAGTGGTAAAAAAGCTGCGCGATTAGGTCTTGAACTTTAATAGATTGTTAAACTTTCTATTTTGTATCTAGTAGGTTTCTGAACTTTCAATTTCGTGTACAATAGGTCCTTAATTTTTTAATTCAAAATTCAGGGTCATATTCAAAACGAAACTTAATTTTATATCATATAGATCTATTAATTTATTCCTATTAGATGCAAAATTGAAATTCATGAATCTATTAAACACAAAGTTAAAAGTTCATAAAATTGTTACACATTTTAGGGTTTAGAAACTTGGGACAAAACCCATAGTTTAACCTAAAAGTATCTTATTCCCCTTTTGAGTTCTTATTGTCAATGGGAATACCCTAATGATTACAATTTTACATATGAGGTATGTGGCTACATTGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAACTGCATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCGTTTTTTAGGTCTTATTTCTTAATTCTTATCAACCTTTGAGTATTGGCGCTCTGCCCCGGCCCCCATCCGAAACGAAAACTACACAGTGGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCATGGAGTTTTACTGAGATGAATTTGCTGATGGGAGAAACGGATTATGGATGAGAATTAAGTTGAATGATCCACTCTTTTGCTTAAATCCTTCGAGATTGCTCGTCTTTGAATATGATCCAGGTTTCGAGATTGAAAAACGTGGAAATTTCTCAATATTTTTCCAGGGTCGGAATCTGGAAATATGAAAATATTGAGATCTTTGCTTATAAACTTATC

mRNA sequence

AGAAAATCCCTTCTGTCTTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCGCCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGAATCTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAACTGCATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCGTTTTTTAGGTCTTATTTCTTAATTCTTATCAACCTTTGAGTATTGGCGCTCTGCCCCGGCCCCCATCCGAAACGAAAACTACACAGTGGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCATGGAGTTTTACTGAGATGAATTTGCTGATGGGAGAAACGGATTATGGATGAGAATTAAGTTGAATGATCCACTCTTTTGCTTAAATCCTTCGAGATTGCTCGTCTTTGAATATGATCCAGGTTTCGAGATTGAAAAACGTGGAAATTTCTCAATATTTTTCCAGGGTCGGAATCTGGAAATATGAAAATATTGAGATCTTTGCTTATAAACTTATC

Coding sequence (CDS)

ATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAA
Homology
[Close]
BLAST of CmoCh14G015980 vs. Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.7e-50
Identity = 94/128 (73.44%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 7   NIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPR 66
           +IK+W V+YPVY+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSSTAGPSK 126
           DF Q GRVRV LKK+DG+  NPAI ++KQLM++IAELVP+H GR KKQEPA+SSTAG SK
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASSTAGTSK 128

Query: 127 GKGGRKKK 135
           GKGG+KKK
Sbjct: 129 GKGGKKKK 136

[Close]
BLAST of CmoCh14G015980 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-49
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK LM +IAELVPRHP R+KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]
BLAST of CmoCh14G015980 vs. Swiss-Prot
Match: SRP19_MOUSE (Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.8e-24
Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 1 

Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQ---EPASSSTA 129
           RD   RGRVRV LK+EDG+L     PSRK +ML +AE++P+   R +K    +P      
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of CmoCh14G015980 vs. Swiss-Prot
Match: SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of CmoCh14G015980 vs. Swiss-Prot
Match: SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of CmoCh14G015980 vs. TrEMBL
Match: A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-67
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]
BLAST of CmoCh14G015980 vs. TrEMBL
Match: A0A067JVS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-60
Identity = 116/135 (85.93%), Postives = 125/135 (92.59%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+W+VLYP+YINSKKTIAEGRRI  +KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDGTL NPAIP+RKQLML IAELVPRHPGR KKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            AGPSK GKGGRKK+
Sbjct: 122 GAGPSKSGKGGRKKR 136

[Close]
BLAST of CmoCh14G015980 vs. TrEMBL
Match: B9IEE2_POPTR (Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPTR_0015s04780g PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+WVVLYPVYINSKKTIAEGRRI V KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGGVPNIKKWVVLYPVYINSKKTIAEGRRISVEKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDG+LSNPAIPSRKQLML +AELVPRHPGR KKQEPAS+S
Sbjct: 62  DKAYPRDFMQVGRVRVLLKREDGSLSNPAIPSRKQLMLHVAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            A  SK GKGG+KK+
Sbjct: 122 NAATSKSGKGGKKKR 136

[Close]
BLAST of CmoCh14G015980 vs. TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-59
Identity = 113/135 (83.70%), Postives = 123/135 (91.11%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIK+W+V YPVYINSKKTIAEGRR+  SKACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 78  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 137

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTL NPAI SRK+LM  +AELVPRHPGR+KKQEPAS+S
Sbjct: 138 DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 197

Query: 121 TAGPSK-GKGGRKKK 135
             G SK GKGG+KK+
Sbjct: 198 NTGSSKSGKGGKKKR 212

[Close]
BLAST of CmoCh14G015980 vs. TrEMBL
Match: D7T624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-59
Identity = 113/135 (83.70%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIK+W+V YPVYINSKKTIAEGRR+  SKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 35  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCAEIGDCCSHLKLPFAIEI 94

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTL NPAI S K LM  +AELVPRHPGR+KKQEPAS+S
Sbjct: 95  DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSHKDLMRHVAELVPRHPGRVKKQEPASTS 154

Query: 121 TAGPSK-GKGGRKKK 135
             G SK GKGG+KK+
Sbjct: 155 NTGSSKSGKGGKKKR 169

[Close]
BLAST of CmoCh14G015980 vs. TAIR10
Match: AT1G48160.1 (AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 197.2 bits (500), Expect = 6.4e-51
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK LM +IAELVPRHP R+KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]
BLAST of CmoCh14G015980 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLR+AELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]
BLAST of CmoCh14G015980 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.5e-67
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]
BLAST of CmoCh14G015980 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.5e-67
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]
BLAST of CmoCh14G015980 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-66
Identity = 129/135 (95.56%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPA-SS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 STAGPSKGKGGRKKK 135
           STAGPSKGKGGRKKK
Sbjct: 121 STAGPSKGKGGRKKK 135

[Close]
BLAST of CmoCh14G015980 vs. NCBI nr
Match: gi|802706696|ref|XP_012084174.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas])

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-60
Identity = 116/135 (85.93%), Postives = 125/135 (92.59%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+W+VLYP+YINSKKTIAEGRRI  +KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDGTL NPAIP+RKQLML IAELVPRHPGR KKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            AGPSK GKGGRKK+
Sbjct: 122 GAGPSKSGKGGRKKR 136

The following BLAST results are available for this feature:
BLAST of CmoCh14G015980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRP19_ORYSJ6.7e-5073.44Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SR... [more]
SRP19_ARATH1.1e-4969.66Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1... [more]
SRP19_MOUSE4.8e-2448.85Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1[more]
SRP19_PONAB1.1e-2349.62Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2[more]
SRP19_HUMAN1.1e-2349.62Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3[more]
BLAST of CmoCh14G015980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5F9_CUCSA2.5e-6796.27Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1[more]
A0A067JVS4_JATCU1.7e-6085.93Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1[more]
B9IEE2_POPTR1.1e-5985.93Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPT... [more]
D7T671_VITVI1.9e-5983.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=... [more]
D7T624_VITVI4.2e-5983.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=... [more]
BLAST of CmoCh14G015980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G48160.16.4e-5169.66 signal recognition particle 19 kDa protein, putative / SRP19, putati... [more]
BLAST of CmoCh14G015980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077020|ref|XP_008438988.1|1.2e-6796.27PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo][more]
gi|449459788|ref|XP_004147628.1|3.5e-6796.27PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus][more]
gi|700202067|gb|KGN57200.1|3.5e-6796.27hypothetical protein Csa_3G171080 [Cucumis sativus][more]
gi|449460339|ref|XP_004147903.1|3.9e-6695.56PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus][more]
gi|802706696|ref|XP_012084174.1|2.4e-6085.93PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002778Signal_recog_particle_SRP19
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
biological_process GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component GO:0048500 signal recognition particle
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
molecular_function GO:0008312 7S RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G015980.1CmoCh14G015980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002778Signal recognition particle, SRP19 subunitGENE3DG3DSA:3.30.56.30coord: 5..117
score: 1.3
IPR002778Signal recognition particle, SRP19 subunitPANTHERPTHR17453SIGNAL RECOGNITION PARTICLE 19 KD PROTEINcoord: 1..134
score: 1.1
IPR002778Signal recognition particle, SRP19 subunitPFAMPF01922SRP19coord: 13..106
score: 6.3
IPR002778Signal recognition particle, SRP19 subunitunknownSSF69695SRP19coord: 6..109
score: 6.67
NoneNo IPR availablePANTHERPTHR17453:SF0SIGNAL RECOGNITION PARTICLE 19 KDA PROTEINcoord: 1..134
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G015980Cucsa.252210Cucumber (Gy14) v1cgycmoB0700
CmoCh14G015980CmaCh14G015620Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G015980Cla021824Watermelon (97103) v1cmowmB231
CmoCh14G015980Csa3G171080Cucumber (Chinese Long) v2cmocuB239
CmoCh14G015980MELO3C006747Melon (DHL92) v3.5.1cmomeB230
CmoCh14G015980ClCG05G006830Watermelon (Charleston Gray)cmowcgB219
CmoCh14G015980CSPI03G15310Wild cucumber (PI 183967)cmocpiB243
CmoCh14G015980Lsi05G013910Bottle gourd (USVL1VR-Ls)cmolsiB234
CmoCh14G015980Cp4.1LG03g12000Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G015980MELO3C006747.2Melon (DHL92) v3.6.1cmomedB260
CmoCh14G015980CsaV3_3G015480Cucumber (Chinese Long) v3cmocucB0283
CmoCh14G015980Cla97C05G088450Watermelon (97103) v2cmowmbB243
CmoCh14G015980Bhi01G000814Wax gourdcmowgoB0317
CmoCh14G015980CsGy3G015380Cucumber (Gy14) v2cgybcmoB290
CmoCh14G015980Carg19599Silver-seed gourdcarcmoB0388
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G015980Melon (DHL92) v3.5.1cmomeB200
CmoCh14G015980Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G015980Melon (DHL92) v3.6.1cmomedB225
CmoCh14G015980Silver-seed gourdcarcmoB0096
CmoCh14G015980Silver-seed gourdcarcmoB1006
CmoCh14G015980Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G015980Cucurbita moschata (Rifu)cmocmoB224
CmoCh14G015980Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G015980Cucurbita maxima (Rimu)cmacmoB797