Cucsa.252210 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.252210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Signal recognition particle 19 kDa family protein
Location	scaffold02229 : 1171953 .. 1174952 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCATATTCGTAAATCAGATCTCTGTTTAGCTTCTCGATTCGCATTCTTAATCAGTTGATTCTTAATTTGGTAGGTATGTAACTTGTTTCTTATGAGTTGCTTCAGATTGTTATTCTTTGGTTCTATAGAATTTCGTAGGAGTACATTAATTGACATGCCATATGAGGAATTGATTTCATTTTTTGTCATTTTGATGGCAATGATCAGACAACCGAGTTGTTCTGAGGATTTTTTTACGAAGTTGAAATCCTGTTCAATTAGGCCATTTTTAATTGCTTCAATATAATATGTTTTTTCTTTTTATTTTGTTTTATATTTGATTGAAGGTGCATTGTGATAGGAATTTGGTCGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTGTTGTATCCCATTTATATTAATTCAAAGAAAACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCTTGTGAGAATCCTACGTGTGCTGAGATTGGAGATTGCTGCAGTCATCTCAAACTTCCCTTTGCCATTGAGGTTTTTCTAGCAATCATCTTTTATTGATAAAGATCTTACTTTCTCATTAGTTTTTGTTCTTCCTGCTCCTTGAAGGTAGCTGCTGCAACCTGCTTTGAGTTTATGTGAACCTGTGATAATTGATAGAATGATTTAATTGGGTTGTTTTCTTATAACATTAAGAAAATCAATATTCAAACTAAATCCAAAAATCATTTAGGCCATGTTTGGTTCCTTCCGGGACATGATAATTTAAACTATGTTTGGTAGCCGTTTTGTTTGTAGTTTTGTTTTTCTAAATGTAGGCTTGTTTTCTTCGAATTTTCTTATCATGATTTTCACATTTATTAAAGAAACATTTGAATTCTTAGTCAAATCTAAAAACAAAAAATAAGCTTGAGAAAATGACTTTTTTTAGTGTTTGAAACTCAGCTTGATTTTTGAAAACATTGATAGAAGTAGACAGCATAATATGCAAATTCAGTGCTGAAAGTAGAATTGATAAGCTTAATTTTTACAATGTAAAAACCAAATGATTATCTGATGGGGCATTATGAATTCACAACCAATAGCTAGAAAGTTAACAGTTTGATTTGTCTTGCACTTTTCTCTTGTAGTTCTGAAAATCCACATCTTTTCTCCTTTCAATAGAAAAACAAAGCAAAGTTTATTGGTTTATATTTACAGCATTCCTGCAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCAGCTGAAGAAGGAGGATGGAGCTCTCTCCAATCCAGCTATTACTTCCAGTAAGGCTTTTGCTTGTCTCTTGAAAAAGATTTATTTCGGATCTTTCTCATTCCAAAGGAGAAATTTAATTGAAAATCCTTTTTGGATTTCAAACCATAGAATTTAAAATTATTTCTTGAACTTTTTTGGTTTTAAACCGAGAGTAAAATTTCAAGCAGTTGTCATGTGAGAATGTTCAGTGTGTGCAAGCTAACCTAGACACTCAGTTCTCTAGAAAAGATAGTGTATTGCTCCAGAGTATTTTGGTCAATGCATCAAGGTTGTTGAATCTTGCCTTACATAACTGTATGGTTTTTACCTGAAGTGGATTTATAAAGATGAAATTAGTCCATAAAGAAACATTGGGGGCTAGCCAAAAAGGAGAGGCACCCTGAGGGTGAATTCTTCTACCCATGAATAGACAGTAGCGAAAAAGTTGTCTATTCTTCATCAACAAATTCCTAACAAACTATTATATCAAACACATCATACTTGTTAACTAAAGAAAATTATTACTTCTAAATAATTTCTTTCAACAATCATCCCATTTACTAAAAAGGGGATTCTTCCTCCAGTTTGATTGAAACACCCTGAGAATTCTGTTTGAAGTTAATTTCAATCCAAAGTGGTAACAACGCAGGTCTAATTGGAATGAAACAAAATCCCAGTTTCCACCCTTTTTTTTTCTGCCTTGGGCCTTAGATTTTGTGGAACTACCTTTCACAGATCATATCAATTAGTTATAGTGACTATTTGTGGGTGTGGGGATTCTGCTAGTCCTTACTATTGTATCAGTTAAAGTAGTTTGGATAACTGTATTTATCTAATAACAGATGCTACAATTTGTCCAACTTTTTTCTAAAAGAAAGCGCTTTTCTTTTCGTTAAAACCATGGTCCTTCAACTCTAAAAATTGTTTTATAGGTTCTTAAGATATCAGAATGTTATTAAACACTGAATTGAAAATATATAGACTTATTAAACACAAAATTGAAACTTCAAGGATGTGCTTATAATTTAACCTAAGTGTTTCAAAGTTCCCTCCAAGTTCTTATTATCAATAAAGTACCATAATTATTACGATTTTACATATGAGACATCTGGGTCTATTGCAGGAAAACAACTTATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACTAAGAAGCAGGAGCCAGCATCCTCATCAACAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTGCATTGCCATTATGAAATTGTTAGAACCAGATTGTTATCAACGAGGCAGGCGGTTTCGTTTTCAGTTCTTAGTTCTTAATTCTTAAAAGTTGGTGTTCTACCCCGGCTCTCATCCGAAACGAAAACTAACACAATGGTCCGAAAGTTTTTGTGAAACGTCATCGATACTTTTTCTTTAATGGTCGATAAAAAAAGTCAGGAATACAATTTTTAAGTGTTAACAAATATCACATTTGGTGTAGCCTGGGATTGTTTTGAACATTTTTGTAAATTAGTGGATCAAGAAGTGCTTTTACTAAGATAAAATTTCATGTTGGACAAAAGGAAAGTGGATGGGAATTTAGTTGAATGGTCCACTTTTTTTTCTTCAAATCCTAAGATTGGATGTGAAATAACCTTTCTATGAATATGATTCACAGGTC

mRNA sequence

TGGCATATTCGTAAATCAGATCTCTGTTTAGCTTCTCGATTCGCATTCTTAATCAGTTGATTCTTAATTTGGTGCATTGTGATAGGAATTTGGTCGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTGTTGTATCCCATTTATATTAATTCAAAGAAAACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCTTGTGAGAATCCTACGTGTGCTGAGATTGGAGATTGCTGCAGTCATCTCAAACTTCCCTTTGCCATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCAGCTGAAGAAGGAGGATGGAGCTCTCTCCAATCCAGCTATTACTTCCAGAAAACAACTTATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACTAAGAAGCAGGAGCCAGCATCCTCATCAACAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTGCATTGCCATTATGAAATTGTTAGAACCAGATTGTTATCAACGAGGCAGGCGGTTTCGTTTTCAGTTCTTAGTTCTTAATTCTTAAAAGTTGGTGTTCTACCCCGGCTCTCATCCGAAACGAAAACTAACACAATGGTCCGAAAGTTTTTGTGAAACGTCATCGATACTTTTTCTTTAATGGTCGATAAAAAAAGTCAGGAATACAATTTTTAAGTGTTAACAAATATCACATTTGGTGTAGCCTGGGATTGTTTTGAACATTTTTGTAAATTAGTGGATCAAGAAGTGCTTTTACTAAGATAAAATTTCATGTTGGACAAAAGGAAAGTGGATGGGAATTTAGTTGAATGGTCCACTTTTTTTTCTTCAAATCCTAAGATTGGATGTGAAATAACCTTTCTATGAATATGATTCACAGGTC

Coding sequence (CDS)

ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTGTTGTATCCCATTTATATTAATTCAAAGAAAACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCTTGTGAGAATCCTACGTGTGCTGAGATTGGAGATTGCTGCAGTCATCTCAAACTTCCCTTTGCCATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCAGCTGAAGAAGGAGGATGGAGCTCTCTCCAATCCAGCTATTACTTCCAGAAAACAACTTATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACTAAGAAGCAGGAGCCAGCATCCTCATCAACAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG

Protein sequence

MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK*

Homology

[Close]

BLAST of Cucsa.252210 vs. Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52
Identity = 95/128 (74.22%), Postives = 113/128 (88.28%), Query Frame = 1


Query: 7   NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPR 66
           +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAGPSK 126
           DF Q GRVRVQLKK+DG+  NPAI ++KQLM++IAELVP+H GRTKKQEPA+SSTAG SK
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASSTAGTSK 128

Query: 127 GKGGRKKK 135
           GKGG+KKK
Sbjct: 129 GKGGKKKK 136

[Close]

BLAST of Cucsa.252210 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.7e-51
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQE----- 120
           DKAYPRDFMQ GRVRVQLK+EDG L NPAITSRK LM +IAELVPRHP R KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]

BLAST of Cucsa.252210 vs. Swiss-Prot
Match: SRP19_MOUSE (Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-25
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQ---EPASSSTA 129
           RD   RGRVRVQLK+EDG+L      SRK +ML +AE++P+   RT+K    +P      
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cucsa.252210 vs. Swiss-Prot
Match: SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-25
Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 1


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSST---A 129
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cucsa.252210 vs. Swiss-Prot
Match: SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-25
Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 1


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSST---A 129
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cucsa.252210 vs. TrEMBL
Match: A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 4.8e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]

BLAST of Cucsa.252210 vs. TrEMBL
Match: A0A067JVS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.0e-60
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+W+VLYPIYINSKKTIAEGRRI  +KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRV LK+EDG L NPAI +RKQLML IAELVPRHPGRTKKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            AGPSK GKGGRKK+
Sbjct: 122 GAGPSKSGKGGRKKR 136

[Close]

BLAST of Cucsa.252210 vs. TrEMBL
Match: B9IEE2_POPTR (Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPTR_0015s04780g PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-59
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+WVVLYP+YINSKKTIAEGRRI V KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGGVPNIKKWVVLYPVYINSKKTIAEGRRISVEKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRV LK+EDG+LSNPAI SRKQLML +AELVPRHPGRTKKQEPAS+S
Sbjct: 62  DKAYPRDFMQVGRVRVLLKREDGSLSNPAIPSRKQLMLHVAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            A  SK GKGG+KK+
Sbjct: 122 NAATSKSGKGGKKKR 136

[Close]

BLAST of Cucsa.252210 vs. TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.2e-59
Identity = 110/135 (81.48%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIK+W+V YP+YINSKKTIAEGRR+  SKACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 78  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 137

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG L NPAI+SRK+LM  +AELVPRHPGR KKQEPAS+S
Sbjct: 138 DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 197

Query: 121 TAGPSK-GKGGRKKK 135
             G SK GKGG+KK+
Sbjct: 198 NTGSSKSGKGGKKKR 212

[Close]

BLAST of Cucsa.252210 vs. TrEMBL
Match: D7T624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-58
Identity = 110/135 (81.48%), Postives = 120/135 (88.89%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIK+W+V YP+YINSKKTIAEGRR+  SKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 35  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCAEIGDCCSHLKLPFAIEI 94

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG L NPAI+S K LM  +AELVPRHPGR KKQEPAS+S
Sbjct: 95  DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSHKDLMRHVAELVPRHPGRVKKQEPASTS 154

Query: 121 TAGPSK-GKGGRKKK 135
             G SK GKGG+KK+
Sbjct: 155 NTGSSKSGKGGKKKR 169

[Close]

BLAST of Cucsa.252210 vs. TAIR10
Match: AT1G48160.1 (AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 201.8 bits (512), Expect = 2.6e-52
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQE----- 120
           DKAYPRDFMQ GRVRVQLK+EDG L NPAITSRK LM +IAELVPRHP R KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]

BLAST of Cucsa.252210 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 6.9e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cucsa.252210 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 6.9e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]

BLAST of Cucsa.252210 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 2.6e-70
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLR+AELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cucsa.252210 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 2.7e-67
Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 STAGPSKGKGGRKKK 135
           STAGPSKGKGGRKKK
Sbjct: 121 STAGPSKGKGGRKKK 135

[Close]

BLAST of Cucsa.252210 vs. NCBI nr
Match: gi|1009137619|ref|XP_015886153.1| (PREDICTED: signal recognition particle 19 kDa protein [Ziziphus jujuba])

HSP 1 Score: 239.6 bits (610), Expect = 3.2e-60
Identity = 115/135 (85.19%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG++PNIK+WVV YP+YINSKKTIAEGRRI +SKACENPTCAEIGDCCSH KLPFAIEI
Sbjct: 1   MDGDVPNIKKWVVFYPVYINSKKTIAEGRRICLSKACENPTCAEIGDCCSHFKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRV LKKEDG L NPAI+SRKQLMLR+AELVPRHPGR KKQEPAS+S
Sbjct: 61  DKAYPRDFMQIGRVRVLLKKEDGTLYNPAISSRKQLMLRVAELVPRHPGRAKKQEPASTS 120

Query: 121 TAGPSK-GKGGRKKK 135
           TAG SK GKGG+KK+
Sbjct: 121 TAGSSKSGKGGKKKR 135

The following BLAST results are available for this feature:

BLAST of Cucsa.252210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRP19_ORYSJ	1.9e-52	74.22	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SR...	[more]
SRP19_ARATH	4.7e-51	69.66	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1...	[more]
SRP19_MOUSE	1.5e-25	49.62	Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1	[more]
SRP19_PONAB	3.4e-25	50.38	Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2	[more]
SRP19_HUMAN	3.4e-25	50.38	Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3	[more]

BLAST of Cucsa.252210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5F9_CUCSA	4.8e-71	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1	[more]
A0A067JVS4_JATCU	5.0e-60	85.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1	[more]
B9IEE2_POPTR	1.5e-59	84.44	Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPT...	[more]
D7T671_VITVI	7.2e-59	81.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=...	[more]
D7T624_VITVI	1.6e-58	81.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=...	[more]

BLAST of Cucsa.252210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48160.1	2.6e-52	69.66	signal recognition particle 19 kDa protein, putative / SRP19, putati...	[more]

BLAST of Cucsa.252210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459788\|ref\|XP_004147628.1\|	6.9e-71	100.00	PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus]	[more]
gi\|700202067\|gb\|KGN57200.1\|	6.9e-71	100.00	hypothetical protein Csa_3G171080 [Cucumis sativus]	[more]
gi\|659077020\|ref\|XP_008438988.1\|	2.6e-70	98.51	PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]	[more]
gi\|449460339\|ref\|XP_004147903.1\|	2.7e-67	96.30	PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus]	[more]
gi\|1009137619\|ref\|XP_015886153.1\|	3.2e-60	85.19	PREDICTED: signal recognition particle 19 kDa protein [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002778	Signal_recog_particle_SRP19
IPR002778	Signal_recog_particle_SRP19

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008312	7S RNA binding
GO:0008312	7S RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0048500	signal recognition particle
GO:0048500	signal recognition particle

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.252210.2	Cucsa.252210.2	mRNA
Cucsa.252210.1	Cucsa.252210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002778	Signal recognition particle, SRP19 subunit	GENE3D	G3DSA:3.30.56.30		coord: 5..117 score: 3.4
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 1..134 score: 1.3
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 13..106 score: 1.7
IPR002778	Signal recognition particle, SRP19 subunit	unknown	SSF69695	SRP19	coord: 6..109 score: 4.97
None	No IPR available	PANTHER	PTHR17453:SF0	SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN	coord: 1..134 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.252210	Cla021824	Watermelon (97103) v1	cgywmB479
Cucsa.252210	Csa3G171080	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.252210	MELO3C006747	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.252210	ClCG05G006830	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.252210	CSPI03G15310	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.252210	CmaCh14G015620	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.252210	CmoCh14G015980	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.252210	Lsi05G013910	Bottle gourd (USVL1VR-Ls)	cgylsiB416
Cucsa.252210	Cp4.1LG03g12000	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.252210	MELO3C006747.2	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.252210	CsaV3_3G015480	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.252210	Cla97C05G088450	Watermelon (97103) v2	cgywmbB452
Cucsa.252210	Bhi01G000814	Wax gourd	cgywgoB522
Cucsa.252210	Carg19599	Silver-seed gourd	carcgyB0329

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.252210	Melon (DHL92) v3.5.1	cgymeB430
Cucsa.252210	Watermelon (Charleston Gray)	cgywcgB453
Cucsa.252210	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.252210	Melon (DHL92) v3.6.1	cgymedB425
Cucsa.252210	Silver-seed gourd	carcgyB0833
Cucsa.252210	Wax gourd	cgywgoB512
Cucsa.252210	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.252210	Cucurbita moschata (Rifu)	cgycmoB0707
Cucsa.252210	Cucurbita moschata (Rifu)	cgycmoB0718