Cp4.1LG03g12000 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g12000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSignal recognition particle 19 kDa family protein
LocationCp4.1LG03 : 10590729 .. 10593777 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGTGGTGAAAAAAAAAATCCCTTCTGTCTTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCACCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGTAATCGTATTTAGTTGATTCTTGGTTTAGTGGATTTGTAACTTGTTTCATACGATCTTGTGTTTTAGGATGTTTACATCTTCTTTGGGATTGTTTCTCTCTTCTTCTACTGAAGCTCATTGGCAGTAATTGGCATAGCATATGAGGAATTTATTCACTTTTTTGTCATTTTGATTGCAATGATCAGATAAATGAGCTTTATCCAGCTAGGAATTTGTTAAGTAGTTGAAATCCTGTTCAATTAGGTGCTTTCTGATTACTAGAATGTTATACTTCTTTAGCAGTATGAATCTTCAATCGGTGGATCAGACAAAGAAAATCTGGTCAAATTTAATCAAATATTAGGAACTTAAAGTCAAATTCAAACTTCACTTCATTTTCTTTCGGCAAATTTTAGAATATCCTTGTTTGGAACTAGAATTTATTGAATGAAATGGATTATTGATAAATTTACTTGAAGTGTTGATTTTCTTTCATCATGCTTTGCAATGTATTTGCAAATGTGGGGGAATTAGACGGTTTGTTTATTTCAACTTTGTCTTGACTTTGTCTCAACGTTGCATTTTCTCGATATTTTTCCCCCTTTATTTTCCATAGATGTGCTGTTTGAACATGTTTATGTATAGCATATTGAAAAGCATTAACAAAAATTTGTTGTTATTATTGGATAGTGTGGTGTTAAATTTTCAATTTTATTGTTTGAGGTGGTGGTTATATTAATGGCCTAAAATTGTAGAACATTAAGGTGTCCCAGCTTTCCTTTCTATAAATTGTTGGAAATTTCACTCAAGTTTTCAATTCATAATGTCCCAATTTGAGACTGTATGAAGAATATATTTCTGTCAGATAACCAAAAACTGAATTGAGTTGAACAGTTTCTTGTCGAGGGAACATTCGTACTAATGTCTGAAGAATATATTTTGTTTTGCCCTATACTGATTGAATATGCATTATGATAGAAATTTTTTATGTGCTATTATAGGAATTTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGGTTTTCTGGCAATGATCTGTCATTGATTAAATCTTCCCTTCCTATTAATTTTTGTTCTCCCTGCTGTTTGTTTGGATTGAAGTTAGCTGCATCCTGCGTCGAGTTTATATGAGACTATGATCATTGATAGAATACGTTAATTCATGTTCTGAGCATTCCTGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGTAAGACTTATACTTGTCTCTTTGGACCCGTTTTATCCCTTGGGAAAAAAAAAATAGCTGTCTGTTTCCGATTAATATTGAAATAGTTATCTGTTTTTCATTAACAAAGTTATAATAAGCTATGAATCAAAGATATACTTATTAACTAAAGAAAAATACTGCTTCTAAATAATTTCTTTCGACATTCTACACGTTTATGAAAATGAGAACTTGCCCTCCAGTTTGATTGAAACACCTATGTCTTGTAGGAAGCATAGAATCAATTTGAGAATTCTGTTTGAAGCTCATTTCAAATCGAAAGTGGTAACAAAGCAGTGCTATTAGGTCTTGAACTTTAATAGATTGTTAAACTTTCTATTTTGTATCCAGTAGGTTTCTAAACTTTCAGTCTCGTTTCTATTTTGTATCCAGTAGGTTTCTAAACTTTCAATCTCGTGTACAATAGGTCCTTAATTTTTTTATTTTATGTCAAATAGGTTCCCTAAATTTTTAATGTTAATGACTTATTATACATTTTCTAAAATCTATCATACAAAAGTTCAAAATTTAGGGTCATATTCAAAACGAAACTTAATTTTATATCATATAGATCTATTAATTTATTCCTATTAGATGCAAGATTGAAATTCATGAATCTATTAAACATGAAATTATTAGACACATTTTAGGGTTTAGAAACTTGGGAGAAAACCCATAATTTAACCTAAAAGTATCTTATTCCCCTTTTGAGTTCTTATTGTCAATGGGAATACCCTAATGATTACAACTTTACATATGAGGTATGTGGCTATATTGCAGGAAAACAAATGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAATTACATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCATATTTAGGTCTTATTTCTTAATTCTTATCAACCTTTGAGTATTGGCGCTCTGCCCCTGCCCCCATCCGAAACGAAAACTACACAGTGGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCATGGAGTTTTACTGAGATGAATTTGCTGATAGGAGAAACGGATTATGGATGAGAATTAAGTTGAATGATCCACTCTTTTGCTTAAATCTTTCGAGATTGCCCGTCTTTGAATATGATCCAGGTTTCGAGATTGAAAAATGTGGAAATTTCTCAATATTTTTCCAGGGTCGGAATCTGGAAATATGAAAATATTGAGATCTTAGCTTATAATCTTGATCACAAACAGACTTGAAACTCTTTCCAGGTTTTGTGAAGATCAAGTTGTTTGTCATCTTCAGATTATTCAACATGAATTGGAGCTGTTCTTAGTGCACAGATACCTTCTTTTATACATATTGAATTTCTGGTGGTGGGTTATTTTGTGCC

mRNA sequence

CGGTGGTGAAAAAAAAAATCCCTTCTGTCTTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCACCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGAATTTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAAATGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAATTACATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCATATTTAGGTCTTATTTCTTAATTCTTATCAACCTTTGAGTATTGGCGCTCTGCCCCTGCCCCCATCCGAAACGAAAACTACACAGTGGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCATGGAGTTTTACTGAGATGAATTTGCTGATAGGAGAAACGGATTATGGATGAGAATTAAGTTGAATGATCCACTCTTTTGCTTAAATCTTTCGAGATTGCCCGTCTTTGAATATGATCCAGGTTTCGAGATTGAAAAATGTGGAAATTTCTCAATATTTTTCCAGGGTCGGAATCTGGAAATATGAAAATATTGAGATCTTAGCTTATAATCTTGATCACAAACAGACTTGAAACTCTTTCCAGGTTTTGTGAAGATCAAGTTGTTTGTCATCTTCAGATTATTCAACATGAATTGGAGCTGTTCTTAGTGCACAGATACCTTCTTTTATACATATTGAATTTCTGGTGGTGGGTTATTTTGTGCC

Coding sequence (CDS)

ATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAAATGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAA

Protein sequence

MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSSTAGPSKGKGGRKKK
Homology
[Close]
BLAST of Cp4.1LG03g12000 vs. Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-49
Identity = 93/128 (72.66%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 7   NIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPR 66
           +IK+W V+YPVY+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSSTAGPSK 126
           DF Q GRVRV LKK+DG+  NPAI ++KQ+M++IAELVP+H GR KKQEPA+SSTAG SK
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASSTAGTSK 128

Query: 127 GKGGRKKK 135
           GKGG+KKK
Sbjct: 129 GKGGKKKK 136

[Close]
BLAST of Cp4.1LG03g12000 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-49
Identity = 100/145 (68.97%), Postives = 114/145 (78.62%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK +M +IAELVPRHP R+KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]
BLAST of Cp4.1LG03g12000 vs. Swiss-Prot
Match: SRP19_MOUSE (Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.8e-24
Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 1 

Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQ---EPASSSTA 129
           RD   RGRVRV LK+EDG+L     PSRK +ML +AE++P+   R +K    +P      
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of Cp4.1LG03g12000 vs. Swiss-Prot
Match: SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of Cp4.1LG03g12000 vs. Swiss-Prot
Match: SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of Cp4.1LG03g12000 vs. TrEMBL
Match: A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-67
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQ+MLRIAELVPRHPGR KKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]
BLAST of Cp4.1LG03g12000 vs. TrEMBL
Match: A0A067JVS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.8e-60
Identity = 115/135 (85.19%), Postives = 125/135 (92.59%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+W+VLYP+YINSKKTIAEGRRI  +KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDGTL NPAIP+RKQ+ML IAELVPRHPGR KKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            AGPSK GKGGRKK+
Sbjct: 122 GAGPSKSGKGGRKKR 136

[Close]
BLAST of Cp4.1LG03g12000 vs. TrEMBL
Match: B9IEE2_POPTR (Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPTR_0015s04780g PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-59
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+WVVLYPVYINSKKTIAEGRRI V KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGGVPNIKKWVVLYPVYINSKKTIAEGRRISVEKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDG+LSNPAIPSRKQ+ML +AELVPRHPGR KKQEPAS+S
Sbjct: 62  DKAYPRDFMQVGRVRVLLKREDGSLSNPAIPSRKQLMLHVAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            A  SK GKGG+KK+
Sbjct: 122 NAATSKSGKGGKKKR 136

[Close]
BLAST of Cp4.1LG03g12000 vs. TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-59
Identity = 112/135 (82.96%), Postives = 123/135 (91.11%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIK+W+V YPVYINSKKTIAEGRR+  SKACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 78  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 137

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTL NPAI SRK++M  +AELVPRHPGR+KKQEPAS+S
Sbjct: 138 DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 197

Query: 121 TAGPSK-GKGGRKKK 135
             G SK GKGG+KK+
Sbjct: 198 NTGSSKSGKGGKKKR 212

[Close]
BLAST of Cp4.1LG03g12000 vs. TrEMBL
Match: D7T624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.4e-59
Identity = 112/135 (82.96%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIK+W+V YPVYINSKKTIAEGRR+  SKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 35  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCAEIGDCCSHLKLPFAIEI 94

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTL NPAI S K +M  +AELVPRHPGR+KKQEPAS+S
Sbjct: 95  DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSHKDLMRHVAELVPRHPGRVKKQEPASTS 154

Query: 121 TAGPSK-GKGGRKKK 135
             G SK GKGG+KK+
Sbjct: 155 NTGSSKSGKGGKKKR 169

[Close]
BLAST of Cp4.1LG03g12000 vs. TAIR10
Match: AT1G48160.1 (AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-50
Identity = 100/145 (68.97%), Postives = 114/145 (78.62%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK +M +IAELVPRHP R+KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]
BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 2.7e-67
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQ+MLR+AELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]
BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 7.9e-67
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQ+MLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]
BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 7.9e-67
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQ+MLRIAELVPRHPGR KKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]
BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.7e-66
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPA-SS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQ+MLRIAELVPRHPGR KKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 STAGPSKGKGGRKKK 135
           STAGPSKGKGGRKKK
Sbjct: 121 STAGPSKGKGGRKKK 135

[Close]
BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: gi|802706696|ref|XP_012084174.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas])

HSP 1 Score: 238.8 bits (608), Expect = 5.5e-60
Identity = 115/135 (85.19%), Postives = 125/135 (92.59%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+W+VLYP+YINSKKTIAEGRRI  +KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDGTL NPAIP+RKQ+ML IAELVPRHPGR KKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            AGPSK GKGGRKK+
Sbjct: 122 GAGPSKSGKGGRKKR 136

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g12000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRP19_ORYSJ1.1e-4972.66Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SR... [more]
SRP19_ARATH2.5e-4968.97Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1... [more]
SRP19_MOUSE4.8e-2448.85Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1[more]
SRP19_PONAB1.1e-2349.62Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2[more]
SRP19_HUMAN1.1e-2349.62Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3[more]
BLAST of Cp4.1LG03g12000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5F9_CUCSA5.5e-6795.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1[more]
A0A067JVS4_JATCU3.8e-6085.19Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1[more]
B9IEE2_POPTR2.5e-5985.19Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPT... [more]
D7T671_VITVI4.2e-5982.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=... [more]
D7T624_VITVI9.4e-5982.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=... [more]
BLAST of Cp4.1LG03g12000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G48160.11.4e-5068.97 signal recognition particle 19 kDa protein, putative / SRP19, putati... [more]
BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077020|ref|XP_008438988.1|2.7e-6795.52PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo][more]
gi|449459788|ref|XP_004147628.1|7.9e-6795.52PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus][more]
gi|700202067|gb|KGN57200.1|7.9e-6795.52hypothetical protein Csa_3G171080 [Cucumis sativus][more]
gi|449460339|ref|XP_004147903.1|8.7e-6694.81PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus][more]
gi|802706696|ref|XP_012084174.1|5.5e-6085.19PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: INTERPRO
TermDefinition
IPR002778Signal_recog_particle_SRP19
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
biological_process GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component GO:0048500 signal recognition particle
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
molecular_function GO:0008312 7S RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g12000.1Cp4.1LG03g12000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002778Signal recognition particle, SRP19 subunitGENE3DG3DSA:3.30.56.30coord: 5..117
score: 4.6
IPR002778Signal recognition particle, SRP19 subunitPANTHERPTHR17453SIGNAL RECOGNITION PARTICLE 19 KD PROTEINcoord: 1..134
score: 2.2
IPR002778Signal recognition particle, SRP19 subunitPFAMPF01922SRP19coord: 13..106
score: 2.2
IPR002778Signal recognition particle, SRP19 subunitunknownSSF69695SRP19coord: 6..109
score: 1.44

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g12000Cucsa.252210Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g12000CmaCh14G015620Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g12000CmoCh14G015980Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g12000Cla021824Watermelon (97103) v1cpewmB613
Cp4.1LG03g12000Cla018144Watermelon (97103) v1cpewmB619
Cp4.1LG03g12000Csa3G171080Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g12000MELO3C006747Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g12000ClCG04G007440Watermelon (Charleston Gray)cpewcgB554
Cp4.1LG03g12000ClCG05G006830Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g12000CSPI03G15310Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g12000Lsi05G013910Bottle gourd (USVL1VR-Ls)cpelsiB507
Cp4.1LG03g12000Lsi01G015070Bottle gourd (USVL1VR-Ls)cpelsiB490
Cp4.1LG03g12000MELO3C033488.2Melon (DHL92) v3.6.1cpemedB701
Cp4.1LG03g12000MELO3C006747.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g12000CsaV3_3G015480Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g12000Bhi01G000814Wax gourdcpewgoB0783
Cp4.1LG03g12000CsGy3G015380Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g12000Carg19599Silver-seed gourdcarcpeB0395
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g12000Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g12000Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g12000Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g12000Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g12000Melon (DHL92) v3.6.1cpemedB659
Cp4.1LG03g12000Silver-seed gourdcarcpeB0106
Cp4.1LG03g12000Silver-seed gourdcarcpeB1042
Cp4.1LG03g12000Wax gourdcpewgoB0766