Cla018144 (gene) Watermelon (97103) v1

Overview
NameCla018144
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSignal recognition particle protein (AHRD V1 **** C1C4T3_RANCA); contains Interpro domain(s) IPR002778 Signal recognition particle, SRP19 subunit
LocationChr4 : 19122026 .. 19124120 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGAGAGATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGGATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGGTTTTCTAGCAATGATTTGTCACTGTCATTGATAAAGATCTTCCCTTCATATTAGCTTTTGTTTTCCCTGCTGCCTATTTTTCATGGAAGTTAGCTGCACTACATTGAGTTTATATGAACCTATGATAATTGATAGAATGCGTTAATTTATATTAACAGCGTTCCCGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTGTGTTTGTGATTTTGTCTCTTTGGACCCTTTTCATCCCTTGGAAAAAGACTTCTATTTATAACTGAAGTCCAGGGTAATAGTGTACTATCCCATAGTATATTGGTCAAAGCATAAAGGTTAGTGAGTTCTTGCATGCATGAAATTAATTTAACCGCATGGTTTTTATATCAAGTAGATTTATAAACATGAAACTAGTCCATAAAGAAACAGTGGAGACTAGCCAAAAAGGAGAGAAGCTCTCTGAATCCTTCTACCCATTAATGTTGAAATAGTTGTCCACTTTTCATTAGCAAAGTTATAATAAACTATTAATCAAACATGTAAAAATTATTGCTTCTAAATAGTTTCTTTGATAAAGAGCTAAGAAGTCATGGGTTCATTCCATGGTGGTCACTTATCTAAGATTTAATATTCTACAAGTTTCCTTGACCCAAATGTTGTAGGGTCGAGTAGGTTGTTCCGTGAGATTAGTCGAGGTGCGTGCAAACTGGCTCGGACACTAACGGATATTAAAAAAAAAAAAAGTTTCTTTCAACATTCATCCCATTTATGAAAACGAAAACCTGACCCCCAGTTTGATCGAAACACTCTTACGTCTTTTAGAAGTATACAGTGAAATTGAAAATTCTGTTCGAAGCTCATTTCAAATCCAAAGTGGTAACAAAGCTCTCTTTAGAAATGAAACAATTCCCACCCTTTTTTTTTACCTTACCCCTTTGATTTTGAGCCTTTCCATCCTAACTTTCAGCAGATCTAATCAACCGACTTTATAGTGATGATTTGTGGATGTGGGATTCTTCTAAAATTATATTTAACTATACTGCTTGATTAACCAAACAACTACTCCCTACTATTGCGCGAGTTCAAGTAGTTGGGATAATTGTATCTATCTAATAGATGCAACAGTTTGTCCAACCTTCTAACGAAATTATCTTTTTTGTAATAGTTTTGTTACGAGTTTAATCAATAAACTTTTAGACTTGTGTTTGTTAGGTCCTTGAACGCAAAAATTATTTAATAGGTTTTTAAACTTTCTAACTTTGTGTTTAGTAGGTCTTTGAACTTTCAATTTCGTGTATAACAAGTTCTTAATTTTTTTTTTATCCTGTATCTAATAGATAATTTACCTATTAGATATTTTCTAAAATTTTAGCATCTATAAGACACAAAATTGAAATTTTAGAGCCATATTAGAAATGTAATTTTGATTTTATATTTTGTAGGTCCTCTAATTTGCTTTTTCTTTTTTAAATGTCAAACATGTTAAAATCTTGTCCTACGCAAATTTGAAAGTTCATGAATCTATTAACACACAAACTTGGAAGTTCAAGAAACTATTGGACACTTCTTAAAGTTTAGGAACCCAGGAGTATACAAAAACTTCAAACTTCAAAAGGCCAAACTTGTAATTTGACCTAAAAGGTTCTTATTCCCCTTTGAGTTCTTATTATCAGTGGAAATACCCTAGATTACAATTTTACATATGAGGTATCTGGCTATATTGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAG

mRNA sequence

ATGGATGGAGAGATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGGATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAG

Coding sequence (CDS)

ATGGATGGAGAGATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGGATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAG

Protein sequence

MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
Homology
[Close]
BLAST of Cla018144 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-50
Identity = 99/145 (68.28%), Postives = 111/145 (76.55%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK CENP C+EI DCC HLKLP  +EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGR--------TK 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK LM +IAELVPRHP R         K
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 KQEPASSSSTAGPS--KGKSGRKKK 136
           KQEP +++ST+G S   GK G+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]
BLAST of Cla018144 vs. Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.4e-49
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = 1 

Query: 7   NIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPR 66
           +IK+W V+YP+Y+NSKKT+AEGRRI   K C +PTCVEI DCCSHLK+P  IE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGPS 126
           DF Q GRVRV LKK+DG+  NPAI ++KQLM++IAELVP+H GRTKKQEPA +SSTAG S
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPA-ASSTAGTS 128

Query: 127 KGKSGRKKK 136
           KGK G+KKK
Sbjct: 129 KGKGGKKKK 136

[Close]
BLAST of Cla018144 vs. Swiss-Prot
Match: SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-23
Identity = 64/131 (48.85%), Postives = 79/131 (60.31%), Query Frame = 1 

Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGP 129
           RD   RGRVRV LK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 -SKGKSGRKKK 136
            SK   G+KKK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of Cla018144 vs. Swiss-Prot
Match: SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-23
Identity = 64/131 (48.85%), Postives = 79/131 (60.31%), Query Frame = 1 

Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGP 129
           RD   RGRVRV LK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 -SKGKSGRKKK 136
            SK   G+KKK
Sbjct: 134 GSKKGKGKKKK 144

[Close]
BLAST of Cla018144 vs. Swiss-Prot
Match: SRP19_MOUSE (Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.4e-23
Identity = 64/132 (48.48%), Postives = 80/132 (60.61%), Query Frame = 1 

Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS--SSTA 129
           RD   RGRVRV LK+EDG+L      SRK +ML +AE++P+   RT+K   A        
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKSGRKKK 136
           G  KGK G+KKK
Sbjct: 134 GSKKGK-GKKKK 144

[Close]
BLAST of Cla018144 vs. TrEMBL
Match: A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.7e-66
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 187

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 188 STAGPSKGKGGRKKK 201

[Close]
BLAST of Cla018144 vs. TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-59
Identity = 108/135 (80.00%), Postives = 120/135 (88.89%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGE+PNIK+W+V YP+YINSKKTIAEGRR+  SK CENPTCVEIGDCCSHLKLPF IEI
Sbjct: 78  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 137

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTL NPAI+SRK+LM  +AELVPRHPGR KKQEPAS+S
Sbjct: 138 DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 197

Query: 121 STAGPSKGKSGRKKK 136
           +T     GK G+KK+
Sbjct: 198 NTGSSKSGKGGKKKR 212

[Close]
BLAST of Cla018144 vs. TrEMBL
Match: B9IEE2_POPTR (Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPTR_0015s04780g PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-59
Identity = 111/135 (82.22%), Postives = 121/135 (89.63%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDG +PNIK+WVVLYP+YINSKKTIAEGRRI V K CENPTCVEIGDCCSHLKLPF IEI
Sbjct: 2   MDGGVPNIKKWVVLYPVYINSKKTIAEGRRISVEKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDG+LSNPAI SRKQLML +AELVPRHPGRTKKQEPAS+S
Sbjct: 62  DKAYPRDFMQVGRVRVLLKREDGSLSNPAIPSRKQLMLHVAELVPRHPGRTKKQEPASTS 121

Query: 121 STAGPSKGKSGRKKK 136
           + A    GK G+KK+
Sbjct: 122 NAATSKSGKGGKKKR 136

[Close]
BLAST of Cla018144 vs. TrEMBL
Match: A0A067JVS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.5e-59
Identity = 115/136 (84.56%), Postives = 123/136 (90.44%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDG +PNIK+W+VLYPIYINSKKTIAEGRRI  +K CENPTCVEIGDCCSHLKLPF IEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDGTL NPAI +RKQLML IAELVPRHPGRTKKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 STAGPSK-GKSGRKKK 136
             AGPSK GK GRKK+
Sbjct: 122 G-AGPSKSGKGGRKKR 136

[Close]
BLAST of Cla018144 vs. TrEMBL
Match: M5W012_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013182mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.4e-59
Identity = 110/136 (80.88%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MD ++PNIKRWVV+YP+YINSKKT+AEGRRI V K CE+PTC EIGDCCSH KLPF IEI
Sbjct: 1   MDKDLPNIKRWVVIYPVYINSKKTVAEGRRISVEKACESPTCAEIGDCCSHFKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDGT  NPAIT+RKQLML++AELVPRHPGRTKKQEPA+S+
Sbjct: 61  DKAYPRDFMQIGRVRVLLKREDGTPFNPAITTRKQLMLKVAELVPRHPGRTKKQEPAASA 120

Query: 121 STAGPSK-GKSGRKKK 136
           STAGPSK GK G+KK+
Sbjct: 121 STAGPSKSGKHGKKKR 136

[Close]
BLAST of Cla018144 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 2.9e-69
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTCVEIGDCC HLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 135

[Close]
BLAST of Cla018144 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 128/135 (94.81%), Postives = 129/135 (95.56%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]
BLAST of Cla018144 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-66
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 187

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 188 STAGPSKGKGGRKKK 201

[Close]
BLAST of Cla018144 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-66
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]
BLAST of Cla018144 vs. NCBI nr
Match: gi|297736791|emb|CBI25992.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 236.1 bits (601), Expect = 3.6e-59
Identity = 108/135 (80.00%), Postives = 120/135 (88.89%), Query Frame = 1 

Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGE+PNIK+W+V YP+YINSKKTIAEGRR+  SK CENPTCVEIGDCCSHLKLPF IEI
Sbjct: 78  MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEI 137

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTL NPAI+SRK+LM  +AELVPRHPGR KKQEPAS+S
Sbjct: 138 DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPASTS 197

Query: 121 STAGPSKGKSGRKKK 136
           +T     GK G+KK+
Sbjct: 198 NTGSSKSGKGGKKKR 212

The following BLAST results are available for this feature:
BLAST of Cla018144 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRP19_ARATH1.4e-5068.28Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1... [more]
SRP19_ORYSJ4.4e-4971.32Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SR... [more]
SRP19_PONAB1.8e-2348.85Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2[more]
SRP19_HUMAN1.8e-2348.85Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3[more]
SRP19_MOUSE5.4e-2348.48Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1[more]
BLAST of Cla018144 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5F9_CUCSA2.7e-6694.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1[more]
D7T671_VITVI2.5e-5980.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=... [more]
B9IEE2_POPTR2.5e-5982.22Signal recognition particle 19 kDa family protein OS=Populus trichocarpa GN=POPT... [more]
A0A067JVS4_JATCU5.5e-5984.56Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1[more]
M5W012_PRUPE9.4e-5980.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013182mg PE=4 SV=1[more]
BLAST of Cla018144 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460339|ref|XP_004147903.1|2.9e-6997.04PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus][more]
gi|659077020|ref|XP_008438988.1|1.3e-6694.81PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo][more]
gi|700202067|gb|KGN57200.1|3.9e-6694.81hypothetical protein Csa_3G171080 [Cucumis sativus][more]
gi|449459788|ref|XP_004147628.1|3.9e-6694.81PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus][more]
gi|297736791|emb|CBI25992.3|3.6e-5980.00unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002778Signal_recog_particle_SRP19
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
biological_process GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component GO:0048500 signal recognition particle
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
molecular_function GO:0008312 7S RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05378watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018144Cla018144.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU05378WMU05378transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002778Signal recognition particle, SRP19 subunitGENE3DG3DSA:3.30.56.30coord: 5..117
score: 2.2
IPR002778Signal recognition particle, SRP19 subunitPANTHERPTHR17453SIGNAL RECOGNITION PARTICLE 19 KD PROTEINcoord: 1..135
score: 6.9
IPR002778Signal recognition particle, SRP19 subunitPFAMPF01922SRP19coord: 13..106
score: 4.1
IPR002778Signal recognition particle, SRP19 subunitunknownSSF69695SRP19coord: 6..109
score: 3.14
NoneNo IPR availablePANTHERPTHR17453:SF0SIGNAL RECOGNITION PARTICLE 19 KDA PROTEINcoord: 1..135
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla018144Cla97C04G074070Watermelon (97103) v2wmwmbB291
Cla018144Csa4G304820Cucumber (Chinese Long) v2cuwmB338
Cla018144ClCG04G007440Watermelon (Charleston Gray)wcgwmB255
Cla018144CSPI04G15480Wild cucumber (PI 183967)cpiwmB345
Cla018144Cucsa.066870Cucumber (Gy14) v1cgywmB064
Cla018144Lsi01G015070Bottle gourd (USVL1VR-Ls)lsiwmB152
Cla018144Cp4.1LG03g12000Cucurbita pepo (Zucchini)cpewmB619
Cla018144CsGy4G014830Cucumber (Gy14) v2cgybwmB314
Cla018144MELO3C033488.2Melon (DHL92) v3.6.1medwmB571
Cla018144CsaV3_4G025830Cucumber (Chinese Long) v3cucwmB355
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla018144Wax gourdwgowmB048
Cla018144Wax gourdwgowmB341
Cla018144Wax gourdwgowmB449
Cla018144Watermelon (97103) v1wmwmB050
Cla018144Watermelon (97103) v1wmwmB155
Cla018144Cucumber (Gy14) v1cgywmB233
Cla018144Cucumber (Gy14) v1cgywmB338
Cla018144Cucurbita maxima (Rimu)cmawmB246
Cla018144Cucurbita maxima (Rimu)cmawmB282
Cla018144Cucurbita maxima (Rimu)cmawmB633
Cla018144Cucurbita maxima (Rimu)cmawmB718
Cla018144Cucurbita maxima (Rimu)cmawmB806
Cla018144Cucurbita maxima (Rimu)cmawmB835
Cla018144Cucurbita moschata (Rifu)cmowmB236
Cla018144Cucurbita moschata (Rifu)cmowmB272
Cla018144Cucurbita moschata (Rifu)cmowmB624
Cla018144Cucurbita moschata (Rifu)cmowmB714
Cla018144Cucurbita moschata (Rifu)cmowmB797
Cla018144Cucurbita moschata (Rifu)cmowmB825
Cla018144Melon (DHL92) v3.5.1mewmB175
Cla018144Melon (DHL92) v3.5.1mewmB325
Cla018144Melon (DHL92) v3.5.1mewmB379
Cla018144Melon (DHL92) v3.5.1mewmB583
Cla018144Watermelon (Charleston Gray)wcgwmB074
Cla018144Watermelon (Charleston Gray)wcgwmB099
Cla018144Cucumber (Chinese Long) v2cuwmB265
Cla018144Cucumber (Chinese Long) v2cuwmB423
Cla018144Cucumber (Chinese Long) v2cuwmB508
Cla018144Cucurbita pepo (Zucchini)cpewmB086
Cla018144Cucurbita pepo (Zucchini)cpewmB446
Cla018144Cucurbita pepo (Zucchini)cpewmB485
Cla018144Cucurbita pepo (Zucchini)cpewmB618
Cla018144Cucurbita pepo (Zucchini)cpewmB849
Cla018144Bottle gourd (USVL1VR-Ls)lsiwmB266
Cla018144Bottle gourd (USVL1VR-Ls)lsiwmB267
Cla018144Cucumber (Gy14) v2cgybwmB250
Cla018144Cucumber (Gy14) v2cgybwmB066
Cla018144Cucumber (Gy14) v2cgybwmB320
Cla018144Cucumber (Gy14) v2cgybwmB476
Cla018144Melon (DHL92) v3.6.1medwmB322
Cla018144Melon (DHL92) v3.6.1medwmB374
Cla018144Silver-seed gourdcarwmB0151
Cla018144Silver-seed gourdcarwmB0258
Cla018144Silver-seed gourdcarwmB0554
Cla018144Silver-seed gourdcarwmB0580
Cla018144Silver-seed gourdcarwmB0999
Cla018144Cucumber (Chinese Long) v3cucwmB073
Cla018144Cucumber (Chinese Long) v3cucwmB275
Cla018144Cucumber (Chinese Long) v3cucwmB448
Cla018144Cucumber (Chinese Long) v3cucwmB533
Cla018144Watermelon (97103) v2wmwmbB285
Cla018144Watermelon (97103) v2wmwmbB286