Carg19599 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19599
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	signal recognition particle 19 kDa protein
Location	Cucurbita_argyrosperma_scaffold_117 : 83605 .. 86016 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCGCCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGTAATCGTATTTAGTTGATTCTTGGTATAGTGGATTTGTAACTTGTTTCATACGATCTTGTGTTTTAGGATGTTTACATCTTCTTTGGGATTGTTTCTCTCTTCTTATACTGAAGCTCATTGGCAGTAATTGGCATAGCATATGAAGAATTTGTTCACTTTTTTGTCATTTTGATTGCAATGATCAGATAAATGAGCTTTATCCAGCTAGGAATTTGTTAAGTAGTTGAAATCCTGTTCAATTAGGTGCTTTCTGATTGCTAGACTGTTATACTTCTTTAGTAGTATGAATCTTCAATCGGCGGATCAGACAAAGAAAATCTGGTCAAATTTAATCAAATATTAGGAACTTAAAGTCAAATTCAAACTTCACTTCATTTTCTTTCGGCAAATTTTAGAATATCCTTGTTTGGAACTAGAATTTATTGAATGAAATGGATTATTTATAAATTTACTTGAAGTGTTGATTTTCTTTCATCATGCTTTGCAATGTATTTGCAAATGTGGGGGAATTGGACGGTTTGTTTATTTCAACTTTGTCTTGCCTTTGTCTCAACGTTGCATTTTCTCGATATTTTGTTCCCCCTTTATTTTCCATAGATGTACTGTTTGAACATGTTTATGTATAGCATATGGAAAATGATTAACAAAACTTTGTTGTTATTATTGGATAGTGTGGTGTTAAATTTTCAATTTTATTGTTTGAGGTGGTGGTTATATTAATGGCCTAAAATTGTAGAACATTAAGGTGTCCTAGCTTTCCTTTCTATAAATTGTTGGAAATTTCACTCAAGTTTTCAATTCATAATGTCCCAATTTGAGACTGTATGAAGAATATATTTCTGTCAGATAACCAAAAACTGAATTGAGTTGAACAGTTTCTTGTCGAGGGAACATTCGTACTAATGTCTGAAGAATATATTTTGTTTTGCCCTATACTGATTGGATATGCATTATGATAGAAATTTTTTATGTGCTATTATAGGAATCTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGGTTTTCTGGCAATGATCTGTCATTGATTAAATCTTCCCTTCCTATTAATTTTTGTTCTCCCTGCTGTTTGTTTAGATTGAAGTTAGCTGCATCCTGCGTTGAGTTTATAAGAGCCTATGATCATTGATAGAATACGTTAATTCATGTTCAGAGCATTCCTGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGTAAGGCTTATGCTTGTCTCTTTGGACCCGTTTTATCCCTTGGGAAAAGGCAGTTGTCTGTTTCCGATTAATATTGAAATAGTTGTCTGTTTTTCATTAATAAAGCTATAATAAGCTATGAATCAAACATATACTTATTTTCATTCAACACCTTTGCGAAAATGAGAACTTGCCCTCCAGTTTGATTGAAACACCTATGTCTTGTAGGAAGCATAGAATCAATTTGAGAATTCTGTTTGAAGCTCATTTCAAATCCAAAGTGGTAAAAAAGCTGCGCGATTAGGTCTTGAACTTTAATAGATTGTTAAACTTTCTTTTTTGTATCTAGGTTTCTGAACTTTCAATTTCGTGTACAATAGGTCCTTAATTTTTTAATTCAAAATTCAGGGTCATATTCAAAACGAAACTTAATTTTATATCATATAGATCTATTAATTTATTCCTATTGGATGCAAAATTGAAATTCATGAATCTATTAAACACAAAGTTAAAAGTTCATAAAATTGTTACACATTTTAGGGTTTAGAAACTTGGGACAAAACCCATAGTTTAACCTAAAAGTATCTTATTCCCCTTTTGAGTTCTTATTGTCAATGGGAATACCCTAATGATTACAATTTTACATATGAGGTATGTGGCTACATTGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAACTGCATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCGTTTTTTAGGTCTTATTTCTTAATTCTT

mRNA sequence

CTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCGCCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGAATCTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAACTGCATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCGTTTTTTAGGTCTTATTTCTTAATTCTT

Coding sequence (CDS)

ATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAA

Protein sequence

MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSSTAGPSKGKGGRKKK

Homology

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BLAST of Carg19599 vs. NCBI nr
Match: XP_022955603.1 (signal recognition particle 19 kDa protein [Cucurbita moschata])

HSP 1 Score: 272.3 bits (695), Expect = 8.6e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

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BLAST of Carg19599 vs. NCBI nr
Match: XP_022979984.1 (signal recognition particle 19 kDa protein [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 1.1e-69
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

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BLAST of Carg19599 vs. NCBI nr
Match: XP_023526150.1 (signal recognition particle 19 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.6 bits (693), Expect = 1.5e-69
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQ+MLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

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BLAST of Carg19599 vs. NCBI nr
Match: XP_008438988.1 (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_008438989.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 2.4e-67
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLR+AELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

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BLAST of Carg19599 vs. NCBI nr
Match: XP_004147628.1 (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011651094.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 6.9e-67
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

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BLAST of Carg19599 vs. TAIR10
Match: AT1G48160.1 (signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-45
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRH 108
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK LM +IAELVPRH
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRH 107

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BLAST of Carg19599 vs. Swiss-Prot
Match: sp|P49964|SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.8e-50
Identity = 94/128 (73.44%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 7   NIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPR 66
           +IK+W V+YPVY+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSSTAGPSK 126
           DF Q GRVRV LKK+DG+  NPAI ++KQLM++IAELVP+H GR KKQEPA+SSTAG SK
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASSTAGTSK 128

Query: 127 GKGGRKKK 135
           GKGG+KKK
Sbjct: 129 GKGGKKKK 136

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BLAST of Carg19599 vs. Swiss-Prot
Match: sp|Q943Z6|SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-44
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRH 108
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK LM +IAELVPRH
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRH 107

[Close]

BLAST of Carg19599 vs. Swiss-Prot
Match: sp|Q9D7A6|SRP19_MOUSE (Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-24
Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQ---EPASSSTA 129
           RD   RGRVRV LK+EDG+L     PSRK +ML +AE++P+   R +K    +P      
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

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BLAST of Carg19599 vs. Swiss-Prot
Match: sp|P09132|SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

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BLAST of Carg19599 vs. Swiss-Prot
Match: sp|Q5RBR1|SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

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BLAST of Carg19599 vs. TrEMBL
Match: tr|A0A1S3AYC2|A0A1S3AYC2_CUCME (signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483920 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-67
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLR+AELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Carg19599 vs. TrEMBL
Match: tr|A0A0A0L5F9|A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.5e-67
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]

BLAST of Carg19599 vs. TrEMBL
Match: tr|A0A067JVS4|A0A067JVS4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19072 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.1e-60
Identity = 116/135 (85.93%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDG +PNIK+W+VLYP+YINSKKTIAEGRRI  +KACENPTC EIGDCCSHLKLPFAIEI
Sbjct: 2   MDGNLPNIKKWIVLYPIYINSKKTIAEGRRISTTKACENPTCVEIGDCCSHLKLPFAIEI 61

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQ GRVRVLLK+EDGTL NPAIP+RKQLML IAELVPRHPGR KKQEPAS+S
Sbjct: 62  DKAYPRDFMQIGRVRVLLKREDGTLYNPAIPTRKQLMLHIAELVPRHPGRTKKQEPASTS 121

Query: 121 TAGPSK-GKGGRKKK 135
            AGPSK GKGGRKK+
Sbjct: 122 GAGPSKSGKGGRKKR 136

[Close]

BLAST of Carg19599 vs. TrEMBL
Match: tr|A0A2I4HIM7|A0A2I4HIM7_9ROSI (signal recognition particle 19 kDa protein isoform X2 OS=Juglans regia OX=51240 GN=LOC109018317 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.1e-60
Identity = 115/133 (86.47%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 3   GEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDK 62
           G++PNIK+W V YPVYINSKKT+AEGRRI VS ACENPTCAEI DCC HLKLPFAIEIDK
Sbjct: 5   GDVPNIKKWTVFYPVYINSKKTVAEGRRISVSNACENPTCAEIADCCGHLKLPFAIEIDK 64

Query: 63  AYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSSTA 122
           AYPRDFMQRGRVRVLLKKEDGTL NPAI SRKQLMLR+AELVPRHPGR+KKQEP+S+STA
Sbjct: 65  AYPRDFMQRGRVRVLLKKEDGTLCNPAISSRKQLMLRVAELVPRHPGRVKKQEPSSTSTA 124

Query: 123 GPSK-GKGGRKKK 135
           GPSK GKGGRKK+
Sbjct: 125 GPSKSGKGGRKKR 137

[Close]

BLAST of Carg19599 vs. TrEMBL
Match: tr|A0A2I4HIM3|A0A2I4HIM3_9ROSI (signal recognition particle 19 kDa protein isoform X1 OS=Juglans regia OX=51240 GN=LOC109018317 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.1e-60
Identity = 115/133 (86.47%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 3   GEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDK 62
           G++PNIK+W V YPVYINSKKT+AEGRRI VS ACENPTCAEI DCC HLKLPFAIEIDK
Sbjct: 17  GDVPNIKKWTVFYPVYINSKKTVAEGRRISVSNACENPTCAEIADCCGHLKLPFAIEIDK 76

Query: 63  AYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSSTA 122
           AYPRDFMQRGRVRVLLKKEDGTL NPAI SRKQLMLR+AELVPRHPGR+KKQEP+S+STA
Sbjct: 77  AYPRDFMQRGRVRVLLKKEDGTLCNPAISSRKQLMLRVAELVPRHPGRVKKQEPSSTSTA 136

Query: 123 GPSK-GKGGRKKK 135
           GPSK GKGGRKK+
Sbjct: 137 GPSKSGKGGRKKR 149

The following BLAST results are available for this feature:

BLAST of Carg19599 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955603.1	8.6e-70	100.00	signal recognition particle 19 kDa protein [Cucurbita moschata]	[more]
XP_022979984.1	1.1e-69	99.25	signal recognition particle 19 kDa protein [Cucurbita maxima]	[more]
XP_023526150.1	1.5e-69	99.25	signal recognition particle 19 kDa protein [Cucurbita pepo subsp. pepo]	[more]
XP_008438988.1	2.4e-67	96.27	PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_0084389...	[more]
XP_004147628.1	6.9e-67	96.27	PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus] >XP_0116...	[more]

BLAST of Carg19599 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48160.1	1.1e-45	78.50	signal recognition particle 19 kDa protein, putative / SRP19, putative	[more]

BLAST of Carg19599 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P49964\|SRP19_ORYSJ	6.8e-50	73.44	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|Q943Z6\|SRP19_ARATH	1.9e-44	78.50	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
sp\|Q9D7A6\|SRP19_MOUSE	4.9e-24	48.85	Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=...	[more]
sp\|P09132\|SRP19_HUMAN	1.1e-23	49.62	Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1...	[more]
sp\|Q5RBR1\|SRP19_PONAB	1.1e-23	49.62	Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1...	[more]

BLAST of Carg19599 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYC2\|A0A1S3AYC2_CUCME	1.6e-67	96.27	signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC1034839...	[more]
tr\|A0A0A0L5F9\|A0A0A0L5F9_CUCSA	4.5e-67	96.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1	[more]
tr\|A0A067JVS4\|A0A067JVS4_JATCU	3.1e-60	85.93	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19072 PE=4 SV=1	[more]
tr\|A0A2I4HIM7\|A0A2I4HIM7_9ROSI	4.1e-60	86.47	signal recognition particle 19 kDa protein isoform X2 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2I4HIM3\|A0A2I4HIM3_9ROSI	4.1e-60	86.47	signal recognition particle 19 kDa protein isoform X1 OS=Juglans regia OX=51240 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0048500	signal recognition particle

Vocabulary: **Molecular Function**
Term	Definition
GO:0008312	7S RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR036521	SRP19-like_sf
IPR002778	Signal_recog_particle_SRP19

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19599-RA	Carg19599-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 13..107 e-value: 2.0E-31 score: 108.7
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 7..124
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	GENE3D	G3DSA:3.30.56.30		coord: 3..119 e-value: 3.6E-43 score: 148.7
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	SUPERFAMILY	SSF69695	SRP19	coord: 6..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19599	Cla021824	Watermelon (97103) v1	carwmB0269
Carg19599	Csa3G171080	Cucumber (Chinese Long) v2	carcuB0306
Carg19599	MELO3C006747	Melon (DHL92) v3.5.1	carmeB0280
Carg19599	ClCG05G006830	Watermelon (Charleston Gray)	carwcgB0271
Carg19599	CSPI03G15310	Wild cucumber (PI 183967)	carcpiB0310
Carg19599	Cucsa.252210	Cucumber (Gy14) v1	carcgyB0329
Carg19599	CmaCh14G015620	Cucurbita maxima (Rimu)	carcmaB0391
Carg19599	CmoCh14G015980	Cucurbita moschata (Rifu)	carcmoB0388
Carg19599	Lsi05G013910	Bottle gourd (USVL1VR-Ls)	carlsiB253
Carg19599	Cp4.1LG03g12000	Cucurbita pepo (Zucchini)	carcpeB0395
Carg19599	CsGy3G015380	Cucumber (Gy14) v2	carcgybB0294
Carg19599	MELO3C006747.2	Melon (DHL92) v3.6.1	carmedB0292
Carg19599	CsaV3_3G015480	Cucumber (Chinese Long) v3	carcucB0309
Carg19599	Cla97C05G088450	Watermelon (97103) v2	carwmbB0287
Carg19599	Bhi01G000814	Wax gourd	carwgoB0365

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19599	Silver-seed gourd	carcarB079
Carg19599	Silver-seed gourd	carcarB317
Carg19599	Cucurbita maxima (Rimu)	carcmaB0392
Carg19599	Cucurbita maxima (Rimu)	carcmaB0393
Carg19599	Cucurbita moschata (Rifu)	carcmoB0389
Carg19599	Cucurbita moschata (Rifu)	carcmoB0390
Carg19599	Cucurbita pepo (Zucchini)	carcpeB0393
Carg19599	Cucurbita pepo (Zucchini)	carcpeB0396
Carg19599	Bottle gourd (USVL1VR-Ls)	carlsiB252
Carg19599	Wax gourd	carwgoB0364