Lsi05G013910 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGTAATTTTCCCTGAAAATTTCAGTGGCAGTTTTGTAAATTTCTATGAGAGCTTTGATTTCAATTTTCTTCTCTTCTTTTCGGTGGCGTTAAAAAAAAAAAAAAAAAAAATCCTATTCTGCCTTCGGTGTTCGGCCTCGCCCCATTTTCCTTTCCCATTCTCTCGCTCAATTTCGCCCATTGTCGCAGTTCGGCCGGAACAGAAAAATCAGATCTCTGTTTAGCTTCTCGATTTGCCATTCATAATCAATTGATTCTTGATTTAGTAGGTATGTAACTTGTTTCGTACGATCCTCGTGCTTTAGGATGTTTGCATACGCTTTCGGATTGTTATTCTTTTGTTCTGCAGAATCTCATAGTCAGTAATTCGCATGTCATATGAGAAATTTATTCCATTTTTTGGCATTTTAATGGCAATAATCAGACAACTGAGTTCTACCCAGCGAGGAAGTTGTTAAGTCGTCGAAATCCTGTTCAGTTAGGTGCTTTTTAATTGCCAGAATATGTTTCTTTTTGCCCTATATTTGATTGAATGTGCATTGTGATAGGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGTGAGAATCCTACGTGCGCTGAGATTGGGGATTGCTGCAGTCATCTGAAACTGCCCTTTGCTATTGAGGTTTTCTAGCAATCATCTGTCATTGATAAAGATCTTACCTGCCTATTAATTTTTATCCTCCCTGCTTCCTGTTTGTGTTGAAGTTAGCTGCAGCCTGCATTGAGTTTATGTGAACCTGTGATAATTGGATTGTTTTCTTACATTATTAGGGAAATCAAATTTTCAATTTAAATTCAAGAATTAGGGTCGGTGATAATTGATGTTTTGATTTGCCTACATTGTCTGATAATTAAAAAAAAAAAGAGAGAATCATTTAGGCCTTATTTGGTAACCATTTTGTTTTTAGTTCTACCTTTGAAATTTATGCTTGTTTTCTCCCAATTTTCTTACCATGGTTTTCACTTTTATTAAAGAAACATTTAAATTCTTAGTAAAAACAAAAACTAAGTTTTAAAAAAAAAACTTTTTTAGTTTTTGAAACTTAGTTTGAGTTTTGAAAACGTTGGTAGGAAGTGGACAATATAACATACAAATTTAGAGCTGAATATAGAGTTTCGAAGCTTAATTTTTAAAATCTAAAAAACAAATGATTATCAAATGGGGTCTTATGAATTCACAACCAATTGCTATAAAGTTAATGGTTCCCATTTGTCCTAAATTTTTGCTTTTGTGACTGAAAATCCACGTTTTTTTTTTCTTGCAATAGAAGAACAAAGCAAAGTTTTTTGGTTTATATTGACAGCATTCCTGCAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCAACTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCCATTACTTCCAGTAAGGCTTTTGCTTGTCTCTTGAAAAATATTTCTTAAATCTTTCTTGTTCCAAACGAGATATATAATTTAAAATTCTTTTTGGAATTTCAAATTATAGGATCTAAAATTATTTCTTGAACATTTTTGGTTCTAAACCAAAGGTAAAGTTTCAAGTAGTTGTCCGGGGAGAATAGCTGGTGTGTGCAAGCTGACCTAAGACACTCACATTTTTTTTTTTAAAGAACATAAAGTGTATTATCCATGTATTTTGGTCAATGCATCAAGGCTCTTGAATTTTGCCTTGTATAATATTAATTTAACCGTGTGATTTTTACCTGAAGTAGATTTATAAAGATGAAATTGGTCCATAAAGAAAGATTGGAGGCTAGCCAAATAGGAGTGGAGCTCCCTGAGGCTGAATCCTTCTACCCATTAATAGACAATAGTGAAAAAGTTGTCTGTTCTTCATCAACAAATCCATAATAAACTATTAAATCAAACATATACGTACTTGTAGAAGATTGTTGCTTCTAGTAATTTCTTTCAACATTCATCCCATTTATTAAAAAGAGGATTTGTACTCCAGTTTGATTGAAACACCCTGGGAATTCCGTTTGAAGTTCATTTCAAATCCAAAGTGGTAACAACGCAGGTCTCTTTGGAATGAAACAAATTCCCCAGTTTACACCCTTTTTTTTTTTTTCTGCCTTGGGCCTTTGATTGTGAGCCTTCCCATGCTACCTTTCACAGATTAAACTCTACTTATAGTGATGATCTGTGGATGTGGGAATCTGCTAAAACTATATTTTAAACTCTACTGCTTGTGCTTGAATTAACCAAACAGCGAGTCCCTACTATTGTACCAGTTGAAGTAGTTTGGATAATTGTATCTATCTACCTAACAGATGCAACAGTTTGTCCAACTTTCATCAAAGGAAAGTGTTTTTCTTTTCGTTAAATTACAAGTTTAATCAATGAACTTTTAGATTCGTATCTATTAGGTCCTTAAATTCTAAAAATTGTTTAATAAATAATAGGTTCTTAAACTTTCAAATCTTTGTATCTGGTAGGTTCTTGAATTTAAATATGTCATAAGTCATTGAACTTTCGATTGTGATTTCAGTAGGTCCTGAATATTTAATCCGATTACACATCTTTTACATATCTATGATACACGAAAATTGACAATTCAGTGTATATAAAAAAATATCTCAAATATATTAAAATCTTATCCGACGCTAAATTGAAAATATAAAACTAGTAGAACTATTAGACATATGACACAAACTTGACAGGTGGAGGAATAAACTTATAATTTAACCTTAAATGTTTCAGAATTCTTCACTAGTTCTTATTATAAATGGAAATATCCTAAGATTAGAGTTTTATATCTGTGGTATCTGGCTATATGGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGAACAAAGAAGCAGGAGCCTGCATCCTCATCAACAGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTGCATTATGTAATTGCAAGAACCAGATTGTTATCGACCAGGCAGGCGGTTTCGTTTTCAGGTCTTAGTTCATAATTCTTGAGACCTTTGAGTATTGGTGTTCTACCCCAGCCCCCATCCAAAACGAAAACTAACACAGTGGTCTGAATGTTTTTGTGAAGAGTCATTGATACTTTTTTCTTGATGGTCGATTCAATGACTGAAAAAAATAGTCACGGAAAGTAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGGTGTAGTATGGGTTTGTCTTAGAACAATTTTGTAAAAGAGTGGATCATGAAGTTTTACTGAGATAAAGTTGGTGATAGGAGAAAAGGATGGTGGATGAGAATTAAGTTGAATGATCCACTCTTTTCTAAATCCTTTGAGATTGGAGGTGAAATAACCAATATATGAATATGATTTACAGGTCTGGAGATTGATA ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGAACAAAGAAGCAGGAGCCTGCATCCTCATCAACAGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTGCATTATGTAATTGCAAGAACCAGATTGTTATCGACCAGGCAGGCGGTTTCGTTTTCAGGTCTTAGTTCATAATTCTTGAGACCTTTGAGTATTGGTGTTCTACCCCAGCCCCCATCCAAAACGAAAACTAACACAGTGGTCTGAATGTTTTTGTGAAGAGTCATTGATACTTTTTTCTTGATGGTCGATTCAATGACTGAAAAAAATAGTCACGGAAAGTAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGGTGTAGTATGGGTTTGTCTTAGAACAATTTTGTAAAAGAGTGGATCATGAAGTTTTACTGAGATAAAGTTGGTGATAGGAGAAAAGGATGGTGGATGAGAATTAAGTTGAATGATCCACTCTTTTCTAAATCCTTTGAGATTGGAGGTGAAATAACCAATATATGAATATGATTTACAGGTCTGGAGATTGATA ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGA MACYGLERECDHWAQCQGFKPTGAFLSSGISEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
BLAST of Lsi05G013910 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 6.8e-09 Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
BLAST of Lsi05G013910 vs. TrEMBL
Match: A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 2.6e-23 Identity = 62/81 (76.54%), Postives = 63/81 (77.78%), Query Frame = 1
BLAST of Lsi05G013910 vs. TrEMBL
Match: A0A0A0L2H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304820 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 6.0e-12 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of Lsi05G013910 vs. TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09 Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1
BLAST of Lsi05G013910 vs. TrEMBL
Match: I3SG59_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09 Identity = 27/36 (75.00%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of Lsi05G013910 vs. TrEMBL
Match: D7T624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09 Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1
BLAST of Lsi05G013910 vs. TAIR10
Match: AT1G48160.1 (AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative) HSP 1 Score: 60.8 bits (146), Expect = 3.9e-10 Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus]) HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23 Identity = 62/81 (76.54%), Postives = 63/81 (77.78%), Query Frame = 1
BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus]) HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]) HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus]) HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|700199178|gb|KGN54336.1| (hypothetical protein Csa_4G304820 [Cucumis sativus]) HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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