Lsi05G013910 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G013910
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSignal recognition particle 19 kDa family protein
Locationchr05 : 21787508 .. 21791115 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGTAATTTTCCCTGAAAATTTCAGTGGCAGTTTTGTAAATTTCTATGAGAGCTTTGATTTCAATTTTCTTCTCTTCTTTTCGGTGGCGTTAAAAAAAAAAAAAAAAAAAATCCTATTCTGCCTTCGGTGTTCGGCCTCGCCCCATTTTCCTTTCCCATTCTCTCGCTCAATTTCGCCCATTGTCGCAGTTCGGCCGGAACAGAAAAATCAGATCTCTGTTTAGCTTCTCGATTTGCCATTCATAATCAATTGATTCTTGATTTAGTAGGTATGTAACTTGTTTCGTACGATCCTCGTGCTTTAGGATGTTTGCATACGCTTTCGGATTGTTATTCTTTTGTTCTGCAGAATCTCATAGTCAGTAATTCGCATGTCATATGAGAAATTTATTCCATTTTTTGGCATTTTAATGGCAATAATCAGACAACTGAGTTCTACCCAGCGAGGAAGTTGTTAAGTCGTCGAAATCCTGTTCAGTTAGGTGCTTTTTAATTGCCAGAATATGTTTCTTTTTGCCCTATATTTGATTGAATGTGCATTGTGATAGGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGTGAGAATCCTACGTGCGCTGAGATTGGGGATTGCTGCAGTCATCTGAAACTGCCCTTTGCTATTGAGGTTTTCTAGCAATCATCTGTCATTGATAAAGATCTTACCTGCCTATTAATTTTTATCCTCCCTGCTTCCTGTTTGTGTTGAAGTTAGCTGCAGCCTGCATTGAGTTTATGTGAACCTGTGATAATTGGATTGTTTTCTTACATTATTAGGGAAATCAAATTTTCAATTTAAATTCAAGAATTAGGGTCGGTGATAATTGATGTTTTGATTTGCCTACATTGTCTGATAATTAAAAAAAAAAAGAGAGAATCATTTAGGCCTTATTTGGTAACCATTTTGTTTTTAGTTCTACCTTTGAAATTTATGCTTGTTTTCTCCCAATTTTCTTACCATGGTTTTCACTTTTATTAAAGAAACATTTAAATTCTTAGTAAAAACAAAAACTAAGTTTTAAAAAAAAAACTTTTTTAGTTTTTGAAACTTAGTTTGAGTTTTGAAAACGTTGGTAGGAAGTGGACAATATAACATACAAATTTAGAGCTGAATATAGAGTTTCGAAGCTTAATTTTTAAAATCTAAAAAACAAATGATTATCAAATGGGGTCTTATGAATTCACAACCAATTGCTATAAAGTTAATGGTTCCCATTTGTCCTAAATTTTTGCTTTTGTGACTGAAAATCCACGTTTTTTTTTTCTTGCAATAGAAGAACAAAGCAAAGTTTTTTGGTTTATATTGACAGCATTCCTGCAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCAACTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCCATTACTTCCAGTAAGGCTTTTGCTTGTCTCTTGAAAAATATTTCTTAAATCTTTCTTGTTCCAAACGAGATATATAATTTAAAATTCTTTTTGGAATTTCAAATTATAGGATCTAAAATTATTTCTTGAACATTTTTGGTTCTAAACCAAAGGTAAAGTTTCAAGTAGTTGTCCGGGGAGAATAGCTGGTGTGTGCAAGCTGACCTAAGACACTCACATTTTTTTTTTTAAAGAACATAAAGTGTATTATCCATGTATTTTGGTCAATGCATCAAGGCTCTTGAATTTTGCCTTGTATAATATTAATTTAACCGTGTGATTTTTACCTGAAGTAGATTTATAAAGATGAAATTGGTCCATAAAGAAAGATTGGAGGCTAGCCAAATAGGAGTGGAGCTCCCTGAGGCTGAATCCTTCTACCCATTAATAGACAATAGTGAAAAAGTTGTCTGTTCTTCATCAACAAATCCATAATAAACTATTAAATCAAACATATACGTACTTGTAGAAGATTGTTGCTTCTAGTAATTTCTTTCAACATTCATCCCATTTATTAAAAAGAGGATTTGTACTCCAGTTTGATTGAAACACCCTGGGAATTCCGTTTGAAGTTCATTTCAAATCCAAAGTGGTAACAACGCAGGTCTCTTTGGAATGAAACAAATTCCCCAGTTTACACCCTTTTTTTTTTTTTCTGCCTTGGGCCTTTGATTGTGAGCCTTCCCATGCTACCTTTCACAGATTAAACTCTACTTATAGTGATGATCTGTGGATGTGGGAATCTGCTAAAACTATATTTTAAACTCTACTGCTTGTGCTTGAATTAACCAAACAGCGAGTCCCTACTATTGTACCAGTTGAAGTAGTTTGGATAATTGTATCTATCTACCTAACAGATGCAACAGTTTGTCCAACTTTCATCAAAGGAAAGTGTTTTTCTTTTCGTTAAATTACAAGTTTAATCAATGAACTTTTAGATTCGTATCTATTAGGTCCTTAAATTCTAAAAATTGTTTAATAAATAATAGGTTCTTAAACTTTCAAATCTTTGTATCTGGTAGGTTCTTGAATTTAAATATGTCATAAGTCATTGAACTTTCGATTGTGATTTCAGTAGGTCCTGAATATTTAATCCGATTACACATCTTTTACATATCTATGATACACGAAAATTGACAATTCAGTGTATATAAAAAAATATCTCAAATATATTAAAATCTTATCCGACGCTAAATTGAAAATATAAAACTAGTAGAACTATTAGACATATGACACAAACTTGACAGGTGGAGGAATAAACTTATAATTTAACCTTAAATGTTTCAGAATTCTTCACTAGTTCTTATTATAAATGGAAATATCCTAAGATTAGAGTTTTATATCTGTGGTATCTGGCTATATGGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGAACAAAGAAGCAGGAGCCTGCATCCTCATCAACAGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTGCATTATGTAATTGCAAGAACCAGATTGTTATCGACCAGGCAGGCGGTTTCGTTTTCAGGTCTTAGTTCATAATTCTTGAGACCTTTGAGTATTGGTGTTCTACCCCAGCCCCCATCCAAAACGAAAACTAACACAGTGGTCTGAATGTTTTTGTGAAGAGTCATTGATACTTTTTTCTTGATGGTCGATTCAATGACTGAAAAAAATAGTCACGGAAAGTAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGGTGTAGTATGGGTTTGTCTTAGAACAATTTTGTAAAAGAGTGGATCATGAAGTTTTACTGAGATAAAGTTGGTGATAGGAGAAAAGGATGGTGGATGAGAATTAAGTTGAATGATCCACTCTTTTCTAAATCCTTTGAGATTGGAGGTGAAATAACCAATATATGAATATGATTTACAGGTCTGGAGATTGATA

mRNA sequence

ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGAACAAAGAAGCAGGAGCCTGCATCCTCATCAACAGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTGCATTATGTAATTGCAAGAACCAGATTGTTATCGACCAGGCAGGCGGTTTCGTTTTCAGGTCTTAGTTCATAATTCTTGAGACCTTTGAGTATTGGTGTTCTACCCCAGCCCCCATCCAAAACGAAAACTAACACAGTGGTCTGAATGTTTTTGTGAAGAGTCATTGATACTTTTTTCTTGATGGTCGATTCAATGACTGAAAAAAATAGTCACGGAAAGTAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGGTGTAGTATGGGTTTGTCTTAGAACAATTTTGTAAAAGAGTGGATCATGAAGTTTTACTGAGATAAAGTTGGTGATAGGAGAAAAGGATGGTGGATGAGAATTAAGTTGAATGATCCACTCTTTTCTAAATCCTTTGAGATTGGAGGTGAAATAACCAATATATGAATATGATTTACAGGTCTGGAGATTGATA

Coding sequence (CDS)

ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGA

Protein sequence

MACYGLERECDHWAQCQGFKPTGAFLSSGISEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
BLAST of Lsi05G013910 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.8e-09
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+
Sbjct: 1  MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKS 36

BLAST of Lsi05G013910 vs. TrEMBL
Match: A0A0A0L5F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-23
Identity = 62/81 (76.54%), Postives = 63/81 (77.78%), Query Frame = 1

Query: 1   MACYGLERECDHWAQC-QGFKPTGA--FLS------SGISEFGWNMDGEIPNIKRWVVLY 60
           +A  GLERECDHWAQ  QG KPT A  FL        GI EFG NMDGEIPNIKRWVVLY
Sbjct: 23  IASCGLERECDHWAQPRQGLKPTRAVAFLQFWPTNFDGIFEFGRNMDGEIPNIKRWVVLY 82

Query: 61  PIYINSKKTIAEGRRIGVSKA 73
           PIYINSKKTIAEGRRIGVSKA
Sbjct: 83  PIYINSKKTIAEGRRIGVSKA 103

BLAST of Lsi05G013910 vs. TrEMBL
Match: A0A0A0L2H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304820 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Sbjct: 1  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 36

BLAST of Lsi05G013910 vs. TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1

Query: 36  NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
           +MDGE+PNIK+W+V YP+YINSKKTIAEGRR+  SKA
Sbjct: 77  DMDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKA 113

BLAST of Lsi05G013910 vs. TrEMBL
Match: I3SG59_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 27/36 (75.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          M+GE+P+IK+W+VLYP+YINSKKT+AEGRRIG+SK+
Sbjct: 1  MEGELPSIKKWIVLYPVYINSKKTVAEGRRIGISKS 36

BLAST of Lsi05G013910 vs. TrEMBL
Match: D7T624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1

Query: 36 NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          +MDGE+PNIK+W+V YP+YINSKKTIAEGRR+  SKA
Sbjct: 34 DMDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKA 70

BLAST of Lsi05G013910 vs. TAIR10
Match: AT1G48160.1 (AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 60.8 bits (146), Expect = 3.9e-10
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+
Sbjct: 1  MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKS 36

BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 62/81 (76.54%), Postives = 63/81 (77.78%), Query Frame = 1

Query: 1   MACYGLERECDHWAQC-QGFKPTGA--FLS------SGISEFGWNMDGEIPNIKRWVVLY 60
           +A  GLERECDHWAQ  QG KPT A  FL        GI EFG NMDGEIPNIKRWVVLY
Sbjct: 23  IASCGLERECDHWAQPRQGLKPTRAVAFLQFWPTNFDGIFEFGRNMDGEIPNIKRWVVLY 82

Query: 61  PIYINSKKTIAEGRRIGVSKA 73
           PIYINSKKTIAEGRRIGVSKA
Sbjct: 83  PIYINSKKTIAEGRRIGVSKA 103

BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Sbjct: 1  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 36

BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Sbjct: 1  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 36

BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Sbjct: 1  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 36

BLAST of Lsi05G013910 vs. NCBI nr
Match: gi|700199178|gb|KGN54336.1| (hypothetical protein Csa_4G304820 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 37 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 73
          MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Sbjct: 1  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA 36

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SRP19_ARATH6.8e-0972.22Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1... [more]
Match NameE-valueIdentityDescription
A0A0A0L5F9_CUCSA2.6e-2376.54Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171080 PE=4 SV=1[more]
A0A0A0L2H8_CUCSA6.0e-12100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304820 PE=4 SV=1[more]
D7T671_VITVI1.6e-0975.68Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=... [more]
I3SG59_MEDTR1.6e-0975.00Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
D7T624_VITVI1.6e-0975.68Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT1G48160.13.9e-1072.22 signal recognition particle 19 kDa protein, putative / SRP19, putati... [more]
Match NameE-valueIdentityDescription
gi|700202067|gb|KGN57200.1|3.7e-2376.54hypothetical protein Csa_3G171080 [Cucumis sativus][more]
gi|449460339|ref|XP_004147903.1|8.6e-12100.00PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus][more]
gi|659077020|ref|XP_008438988.1|8.6e-12100.00PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo][more]
gi|449459788|ref|XP_004147628.1|8.6e-12100.00PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus][more]
gi|700199178|gb|KGN54336.1|8.6e-12100.00hypothetical protein Csa_4G304820 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: INTERPRO
TermDefinition
IPR002778Signal_recog_particle_SRP19
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
biological_process GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component GO:0048500 signal recognition particle
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
molecular_function GO:0008312 7S RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G013910.1Lsi05G013910.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002778Signal recognition particle, SRP19 subunitGENE3DG3DSA:3.30.56.30coord: 37..72
score: 2.4
IPR002778Signal recognition particle, SRP19 subunitPFAMPF01922SRP19coord: 49..72
score: 1.
IPR002778Signal recognition particle, SRP19 subunitunknownSSF69695SRP19coord: 42..72
score: 2.0