WMU65032 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU65032
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 6626690 .. 6629194 (+)
Sequence length	480

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGAGGATGCAGGCTCCTGCTTCTTTGTCCTCCCAGGATGTCTAGGAACAAGTTCGGCTATACGAAGCATCAGTTGTTTTCTGGAAGTAATAGCTGGATTAGACAGAGTTCCGTCCTCCTTCTTCAGCTGGACCCGCACTCTCCCTCTTTGCATGAAATCACGAGGATATGCTTTATCAATCTCAATAGCAAAGTGCAGTTTGAGATGACTGCAGCAATCCCCAATCTCAGCACAGGTTGGATTCTCACATGCTTTGCTAACACCTATACGTCTTCCTTCAGCAATTGTCTTCTTTGAATCAATATAGATTGGATACAGTACTACCCATCTCTTTATGTTGGGAATTTCTCCATCCATATTCCAACCAATTCCTACTAATCCAAGAATCAATTGATTACGAATGGGAAATCGAGAAGCTAAACAGAGATCTGATTCTTCTGTTCCGGCCAACCGCGACAATGGGCGAAATTGAGCGAGAGA

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU65032 vs. TAIR10
Match: AT1G48160.1 (AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 187.6 bits (475), Expect = 6.1e-48
Identity = 89/115 (77.39%), Postives = 96/115 (83.48%), Query Frame = -1


Query: 13  MDGEIPNIKRWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEI 72
           MD    NIK+WVV+YP+YI+SKKT+AEGRRI VSK+CENP C EI DCC HLKL  A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 73  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE 132
           DKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +IAELVPRHP R KKQE
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQE 115

Query: 133  192
           
Sbjct: 121  115

Query: 193  252
           
Sbjct: 181  115

Query: 253  312
           
Sbjct: 241  115

Query: 313  358
           
Sbjct: 301  115

[Close]

BLAST of WMU65032 vs. Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 89/115 (77.39%), Postives = 96/115 (83.48%), Query Frame = -1


Query: 13  MDGEIPNIKRWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEI 72
           MD    NIK+WVV+YP+YI+SKKT+AEGRRI VSK+CENP C EI DCC HLKL  A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 73  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE 132
           DKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +IAELVPRHP R KKQE
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQE 115

Query: 133  192
           
Sbjct: 121  115

Query: 193  252
           
Sbjct: 181  115

Query: 253  312
           
Sbjct: 241  115

Query: 313  358
           
Sbjct: 301  115

[Close]

BLAST of WMU65032 vs. Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.5e-43
Identity = 80/113 (70.80%), Postives = 96/113 (84.96%), Query Frame = -1


Query: 1   NIKRWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEIDKAYPR 60
           +IK+W V+YP+Y++SKKT+AEGRRI   KAC +PTC EI DCCSHLK+  AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 61  DFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS 120
           DF Q GRVRVQLKK+DG+  NPAI ++KQLM++IAELVP+H GRTKKQEPA+S
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAAS 121

Query: 121  180
           
Sbjct: 129  121

Query: 181  240
           
Sbjct: 189  121

Query: 241  300
           
Sbjct: 249  121

Query: 301  340
           
Sbjct: 309  121

[Close]

BLAST of WMU65032 vs. Swiss-Prot
Match: SRP19_MOUSE (Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-22
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = -1


Query: 19  RWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEIDKAYP---- 78
           R++ +YP Y+++KKTIAEGRRI +SKA ENPT  EI D CS + L+  +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 79  RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKK 138
           RD   RGRVRVQLK+EDG+L      SRK +ML +AE++P+   RT+K
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQK 121

Query: 139  198
           
Sbjct: 134  121

Query: 199  258
           
Sbjct: 194  121

Query: 259  318
           
Sbjct: 254  121

Query: 319  331
           
Sbjct: 314  121

[Close]

BLAST of WMU65032 vs. Swiss-Prot
Match: SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-22
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = -1


Query: 19  RWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEIDKAYP---- 78
           R++ +YP Y+++KKTIAEGRRI +SKA ENPT  EI D CS + L+  +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 79  RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKK 138
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121

Query: 139  198
           
Sbjct: 134  121

Query: 199  258
           
Sbjct: 194  121

Query: 259  318
           
Sbjct: 254  121

Query: 319  331
           
Sbjct: 314  121

[Close]

BLAST of WMU65032 vs. Swiss-Prot
Match: SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-22
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = -1


Query: 19  RWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEIDKAYP---- 78
           R++ +YP Y+++KKTIAEGRRI +SKA ENPT  EI D CS + L+  +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 79  RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKK 138
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121

Query: 139  198
           
Sbjct: 134  121

Query: 199  258
           
Sbjct: 194  121

Query: 259  318
           
Sbjct: 254  121

Query: 319  331
           
Sbjct: 314  121

[Close]

BLAST of WMU65032 vs. NCBI nr
Match: gi|700202067|gb|KGN57200.1| (hypothetical protein Csa_3G171080 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 9.1e-62
Identity = 119/127 (93.70%), Postives = 121/127 (95.28%), Query Frame = -1


Query: 1   GLVGIGWNMDGEIPNIKRWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHL 60
           G+   G NMDGEIPNIKRWVVLYPIYI+SKKTIAEGRRIGVSKACENPTCAEIGDCCSHL
Sbjct: 60  GIFEFGRNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHL 119

Query: 61  KLHFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTK 120
           KL FAIEIDKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTK
Sbjct: 120 KLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTK 179

Query: 121 KQEPASS 180
           KQEPASS
Sbjct: 180 KQEPASS 186

Query: 181  240
           
Sbjct: 240  186

Query: 241  300
           
Sbjct: 300  186

Query: 301  360
           
Sbjct: 360  186

Query: 361  382
           
Sbjct: 420  186

[Close]

BLAST of WMU65032 vs. NCBI nr
Match: gi|659077020|ref|XP_008438988.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-60
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = -1


Query: 1   MDGEIPNIKRWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEI 60
           MDGEIPNIKRWVVLYPIYI+SKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKL FAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS 120
           DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPASS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASS 119

Query: 121  180
           
Sbjct: 121  119

Query: 181  240
           
Sbjct: 181  119

Query: 241  300
           
Sbjct: 241  119

Query: 301  358
           
Sbjct: 301  119

[Close]

BLAST of WMU65032 vs. NCBI nr
Match: gi|449459788|ref|XP_004147628.1| (PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = -1


Query: 1   MDGEIPNIKRWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEI 60
           MDGEIPNIKRWVVLYPIYI+SKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKL FAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS 120
           DKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS 119

Query: 121  180
           
Sbjct: 121  119

Query: 181  240
           
Sbjct: 181  119

Query: 241  300
           
Sbjct: 241  119

Query: 301  358
           
Sbjct: 301  119

[Close]

BLAST of WMU65032 vs. NCBI nr
Match: gi|449460339|ref|XP_004147903.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 7.2e-59
Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = -1


Query: 1   MDGEIPNIKRWVVLYPIYIDSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEI 60
           MDGEIPNIKRWVVLYPIYI+SKKTIAEGRRIGVSKACENPTC EIGDCC HLKL FAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS 119

Query: 121  180
           
Sbjct: 121  119

Query: 181  240
           
Sbjct: 181  119

Query: 241  300
           
Sbjct: 241  119

Query: 301  358
           
Sbjct: 301  119

[Close]

BLAST of WMU65032 vs. NCBI nr
Match: gi|297736791|emb|CBI25992.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 218.4 bits (555), Expect = 9.1e-54
Identity = 104/153 (67.97%), Postives = 122/153 (79.74%), Query Frame = -1


Query: 1   LSRLAGTEESDLCLASRFPIRNQLILGLVGIGWNMDGEIPNIKRWVVLYPIYIDSKKTIA 60
           L  +A  + S     +    R ++++G      +MDGE+PNIK+W+V YP+YI+SKKTIA
Sbjct: 50  LHSIANRDLSPYLAGANLYYRLRILIG------DMDGEVPNIKKWIVFYPVYINSKKTIA 109

Query: 61  EGRRIGVSKACENPTCAEIGDCCSHLKLHFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLS 120
           EGRR+  SKACENPTC EIGDCCSHLKL FAIEIDKAYPRDFMQRGRVRV LKKEDGTL 
Sbjct: 110 EGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLY 169

Query: 121 NPAITSRKQLMLRIAELVPRHPGRTKKQEPASS 180
           NPAI+SRK+LM  +AELVPRHPGR KKQEPAS+
Sbjct: 170 NPAISSRKELMRHVAELVPRHPGRVKKQEPAST 196

Query: 181  240
           
Sbjct: 230  196

Query: 241  300
           
Sbjct: 290  196

Query: 301  360
           
Sbjct: 350  196

Query: 361  420
           
Sbjct: 410  196

Query: 421  460
           
Sbjct: 470  196

The following BLAST results are available for this feature:

BLAST of WMU65032 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48160.1	6.1e-48	77.39	signal recognition particle 19 kDa protein, putative / SRP19, putati...	[more]

BLAST of WMU65032 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRP19_ARATH	1.1e-46	77.39	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1...	[more]
SRP19_ORYSJ	5.5e-43	70.80	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SR...	[more]
SRP19_MOUSE	3.2e-22	51.85	Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=1 SV=1	[more]
SRP19_PONAB	4.1e-22	51.85	Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2	[more]
SRP19_HUMAN	4.1e-22	51.85	Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3	[more]

BLAST of WMU65032 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202067\|gb\|KGN57200.1\|	9.1e-62	93.70	hypothetical protein Csa_3G171080 [Cucumis sativus]	[more]
gi\|659077020\|ref\|XP_008438988.1\|	1.7e-60	97.48	PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]	[more]
gi\|449459788\|ref\|XP_004147628.1\|	5.0e-60	97.48	PREDICTED: signal recognition particle 19 kDa protein [Cucumis sativus]	[more]
gi\|449460339\|ref\|XP_004147903.1\|	7.2e-59	95.80	PREDICTED: signal recognition particle 19 kDa protein-like [Cucumis sativus]	[more]
gi\|297736791\|emb\|CBI25992.3\|	9.1e-54	67.97	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002778	Signal_recog_particle_SRP19

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008312	7S RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0048500	signal recognition particle

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021824	Cla021824	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0120149	S2_0120149	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002778	Signal recognition particle, SRP19 subunit	GENE3D	G3DSA:3.30.56.30		coord: 42..158 score: 1.6
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 32..159 score: 9.1
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 54..147 score: 9.1
IPR002778	Signal recognition particle, SRP19 subunit	unknown	SSF69695	SRP19	coord: 47..150 score: 6.8