Cla015658 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015658
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 2426920 .. 2427255 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

mRNA sequence

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM

Homology

[Close]

BLAST of Cla015658 vs. TrEMBL
Match: A0A0A0K391_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037480 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-31
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 26  MYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMW 85
           MYG    GVDGGGRV AVVDG RREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMW
Sbjct: 1   MYG---GGVDGGGRVGAVVDGDRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMW 60

Query: 86  VSGEFPRISEVNHLMVSDSMR 107
           VSGEFPRISEVNHLM S+  R
Sbjct: 61  VSGEFPRISEVNHLMQSNLWR 78

[Close]

BLAST of Cla015658 vs. TrEMBL
Match: F6HII7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 68/114 (59.65%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGG---RREGNSYGFS 60
           MW + AA+RRN  NIRKSPRVADE+M+G       GG +    + G    RR     GFS
Sbjct: 1   MWHMLAAMRRNFQNIRKSPRVADENMFG-------GGNQAELPIFGRDMERRARGWDGFS 60

Query: 61  MIYSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
            +YS++R P S+LSCFS PHVNG DG+WVSG+F  ISE+NHLMVSDSMRYAILM
Sbjct: 61  AVYSIVRVPLSLLSCFSHPHVNGADGVWVSGDFAHISEMNHLMVSDSMRYAILM 107

[Close]

BLAST of Cla015658 vs. TrEMBL
Match: A0A061DMU7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002274 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.1e-28
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWR+   +RRNL NI+KSPRVADE+M G GV   +  G    +    R  G+  G S+I 
Sbjct: 1   MWRMLVVLRRNLQNIKKSPRVADENMVG-GVNTNNNNGAEMPIFIDRRPRGSWNGLSVIC 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           S++R P S++SCFSQPHVNG DG+WVS EF +ISE+NHLMVSDSMRYAILM
Sbjct: 61  SVVRAPLSLVSCFSQPHVNGADGVWVSSEFAQISEMNHLMVSDSMRYAILM 110

[Close]

BLAST of Cla015658 vs. TrEMBL
Match: A0A067KF26_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.1e-26
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWR  A +RRN+HN+RKSPRVADESM+  G   ++ G     +           GFS I+
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMF--GGMNINNGTEFPIIFARETAGRQRIGFSAIF 60

Query: 61  SLLRTPFSILSCF-SQPHVNGVDGMWVSG--EFPRISEVNHLMVSDSMRYAILM 112
            ++  PFS+LSCF SQPH NGVDG+WVSG  EF +ISE+NHLMV+DSMRYAILM
Sbjct: 61  RIVLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQISEMNHLMVNDSMRYAILM 112

[Close]

BLAST of Cla015658 vs. TrEMBL
Match: I3SRB2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 67/111 (60.36%), Postives = 78/111 (70.27%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRL AAV RNL N +KS RVADESM+    AG D G R        R + +  GFS+IY
Sbjct: 1   MWRLVAAVTRNLQNTKKSSRVADESMFE---AGHDRGIR--------RSQHDWSGFSLIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           ++L  P SILSC S P  NGVDG WVSGEF +ISE+NH+MV+DSMRYAILM
Sbjct: 61  AILHAPISILSCVSHPQANGVDGAWVSGEFSQISEMNHIMVNDSMRYAILM 100

[Close]

BLAST of Cla015658 vs. NCBI nr
Match: gi|449453582|ref|XP_004144535.1| (PREDICTED: uncharacterized protein LOC101211016 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 3.7e-46
Identity = 96/106 (90.57%), Postives = 97/106 (91.51%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRV AVVDG RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVGAVVDGDRREGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 107
           SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 103

[Close]

BLAST of Cla015658 vs. NCBI nr
Match: gi|659110985|ref|XP_008455515.1| (PREDICTED: uncharacterized protein LOC103495667 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-45
Identity = 97/107 (90.65%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVV-DGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRVAAVV DG RREGNSYGFSMI
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVAAVVVDGDRREGNSYGFSMI 100

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 107
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

[Close]

BLAST of Cla015658 vs. NCBI nr
Match: gi|700188211|gb|KGN43444.1| (hypothetical protein Csa_7G037480 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-31
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 26  MYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMW 85
           MYG    GVDGGGRV AVVDG RREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMW
Sbjct: 1   MYG---GGVDGGGRVGAVVDGDRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMW 60

Query: 86  VSGEFPRISEVNHLMVSDSMR 107
           VSGEFPRISEVNHLM S+  R
Sbjct: 61  VSGEFPRISEVNHLMQSNLWR 78

[Close]

BLAST of Cla015658 vs. NCBI nr
Match: gi|731409715|ref|XP_010657294.1| (PREDICTED: uncharacterized protein LOC100267059 [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 68/114 (59.65%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGG---RREGNSYGFS 60
           MW + AA+RRN  NIRKSPRVADE+M+G       GG +    + G    RR     GFS
Sbjct: 1   MWHMLAAMRRNFQNIRKSPRVADENMFG-------GGNQAELPIFGRDMERRARGWDGFS 60

Query: 61  MIYSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
            +YS++R P S+LSCFS PHVNG DG+WVSG+F  ISE+NHLMVSDSMRYAILM
Sbjct: 61  AVYSIVRVPLSLLSCFSHPHVNGADGVWVSGDFAHISEMNHLMVSDSMRYAILM 107

[Close]

BLAST of Cla015658 vs. NCBI nr
Match: gi|1009128082|ref|XP_015881037.1| (PREDICTED: uncharacterized protein LOC107416995 [Ziziphus jujuba])

HSP 1 Score: 132.1 bits (331), Expect = 6.0e-28
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 1


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           M R+  ++R+N  NI KSPRVADESMYG GV G  GGG +  +    RR     GF ++Y
Sbjct: 2   MGRVLGSLRQNFQNIGKSPRVADESMYG-GVGG-GGGGNIEIME---RRRSGWKGFLIVY 61

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           S++R PFS+ SCFS PHVNG DG+W SGEF +ISE+NHLMVSDSMRYAILM
Sbjct: 62  SVVRAPFSLFSCFSHPHVNGADGVWASGEFAQISEMNHLMVSDSMRYAILM 107

The following BLAST results are available for this feature:

BLAST of Cla015658 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K391_CUCSA	1.8e-31	87.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037480 PE=4 SV=1	[more]
F6HII7_VITVI	1.1e-28	59.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=...	[more]
A0A061DMU7_THECC	7.1e-28	59.46	Uncharacterized protein OS=Theobroma cacao GN=TCM_002274 PE=4 SV=1	[more]
A0A067KF26_JATCU	5.1e-26	57.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1	[more]
I3SRB2_LOTJA	1.1e-25	60.36	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Cla015658 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453582\|ref\|XP_004144535.1\|	3.7e-46	90.57	PREDICTED: uncharacterized protein LOC101211016 [Cucumis sativus]	[more]
gi\|659110985\|ref\|XP_008455515.1\|	3.1e-45	90.65	PREDICTED: uncharacterized protein LOC103495667 [Cucumis melo]	[more]
gi\|700188211\|gb\|KGN43444.1\|	2.6e-31	87.65	hypothetical protein Csa_7G037480 [Cucumis sativus]	[more]
gi\|731409715\|ref\|XP_010657294.1\|	1.6e-28	59.65	PREDICTED: uncharacterized protein LOC100267059 [Vitis vinifera]	[more]
gi\|1009128082\|ref\|XP_015881037.1\|	6.0e-28	61.26	PREDICTED: uncharacterized protein LOC107416995 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU63225	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015658	Cla015658.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU63225	WMU63225	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015658	Cla97C02G029010	Watermelon (97103) v2	wmwmbB317
Cla015658	Cla97C02G035790	Watermelon (97103) v2	wmwmbB333
Cla015658	Csa7G037480	Cucumber (Chinese Long) v2	cuwmB604
Cla015658	MELO3C018891	Melon (DHL92) v3.5.1	mewmB241
Cla015658	MELO3C019368	Melon (DHL92) v3.5.1	mewmB110
Cla015658	ClCG02G002530	Watermelon (Charleston Gray)	wcgwmB198
Cla015658	ClCG02G009450	Watermelon (Charleston Gray)	wcgwmB215
Cla015658	CSPI06G08990	Wild cucumber (PI 183967)	cpiwmB535
Cla015658	CSPI07G02960	Wild cucumber (PI 183967)	cpiwmB624
Cla015658	Cucsa.120440	Cucumber (Gy14) v1	cgywmB186
Cla015658	Cucsa.180980	Cucumber (Gy14) v1	cgywmB346
Cla015658	CmaCh19G008820	Cucurbita maxima (Rimu)	cmawmB503
Cla015658	CmaCh20G006650	Cucurbita maxima (Rimu)	cmawmB527
Cla015658	CmaCh11G012720	Cucurbita maxima (Rimu)	cmawmB121
Cla015658	CmoCh11G018500	Cucurbita moschata (Rifu)	cmowmB117
Cla015658	CmoCh19G008950	Cucurbita moschata (Rifu)	cmowmB496
Cla015658	Lsi11G013770	Bottle gourd (USVL1VR-Ls)	lsiwmB106
Cla015658	Cp4.1LG15g07070	Cucurbita pepo (Zucchini)	cpewmB268
Cla015658	Cp4.1LG04g03990	Cucurbita pepo (Zucchini)	cpewmB675
Cla015658	CsGy6G009110	Cucumber (Gy14) v2	cgybwmB484
Cla015658	MELO3C018891.2	Melon (DHL92) v3.6.1	medwmB233
Cla015658	MELO3C019368.2	Melon (DHL92) v3.6.1	medwmB109
Cla015658	Carg18060	Silver-seed gourd	carwmB1066
Cla015658	Carg04163	Silver-seed gourd	carwmB0194
Cla015658	Carg16090	Silver-seed gourd	carwmB0334
Cla015658	CsaV3_6G009360	Cucumber (Chinese Long) v3	cucwmB541
Cla015658	CsaV3_7G002850	Cucumber (Chinese Long) v3	cucwmB634

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015658	Cucumber (Gy14) v2	cgybwmB565
Cla015658	Cucumber (Gy14) v2	cgybwmB566
Cla015658	Cucumber (Chinese Long) v3	cucwmB633
Cla015658	Wax gourd	wgowmB272
Cla015658	Wax gourd	wgowmB403
Cla015658	Watermelon (Charleston Gray)	wcgwmB079
Cla015658	Cucumber (Chinese Long) v2	cuwmB603
Cla015658	Cucurbita pepo (Zucchini)	cpewmB305
Cla015658	Bottle gourd (USVL1VR-Ls)	lsiwmB080
Cla015658	Bottle gourd (USVL1VR-Ls)	lsiwmB105