CmaCh20G006650 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G006650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BnaA03g37860D protein
Location	Cma_Chr20 : 3056104 .. 3056613 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGCCTCATCGCAGCTCTTCGCCCTACCCTCCACAACTTCACTAACAGCCACCGCGTCGCCGATGAGAGCATGTTCACTACAACTGAATTCCCCATCTACGCCGTCGCCAATCACCACCACCACCGCCGCCCTGCTGCTCACCGCACCTTCTCCGCCGTCTTCAGCATCATTCGTGCCCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCACCCGTTCACTCCTCCGCCGACACCTTCTGGCTCTCCACCGATCACTATTTTGCCTCCACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGTTACGCCATGTTGATGTAGAAACAGAACAACACTCACAACAACAACAACAAAAAATCAAAACTTTAGCTTTTATTTCGGTTTTAGGTGAAAATAATCACTTGGGTTTTTCTTTTTTTTTAGTTAAATTTGATTCAGTGTCTGTTTCTAATCTTTTCTTGTATTGTTTGCAGACGACCCTGATCCCAATCCCAT

mRNA sequence

ATGTGGCGCCTCATCGCAGCTCTTCGCCCTACCCTCCACAACTTCACTAACAGCCACCGCGTCGCCGATGAGAGCATGTTCACTACAACTGAATTCCCCATCTACGCCGTCGCCAATCACCACCACCACCGCCGCCCTGCTGCTCACCGCACCTTCTCCGCCGTCTTCAGCATCATTCGTGCCCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCACCCGTTCACTCCTCCGCCGACACCTTCTGGCTCTCCACCGATCACTATTTTGCCTCCACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGTTACGCCATGTTGATACGACCCTGATCCCAATCCCAT

Coding sequence (CDS)

ATGTGGCGCCTCATCGCAGCTCTTCGCCCTACCCTCCACAACTTCACTAACAGCCACCGCGTCGCCGATGAGAGCATGTTCACTACAACTGAATTCCCCATCTACGCCGTCGCCAATCACCACCACCACCGCCGCCCTGCTGCTCACCGCACCTTCTCCGCCGTCTTCAGCATCATTCGTGCCCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCACCCGTTCACTCCTCCGCCGACACCTTCTGGCTCTCCACCGATCACTATTTTGCCTCCACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGTTACGCCATGTTGATACGACCCTGA

Protein sequence

MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRPAAHRTFSAVFSIIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLIRP

Homology

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BLAST of CmaCh20G006650 vs. TrEMBL
Match: A0A0A0KFS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 81/113 (71.68%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTE-FPIYAVANHHHHRRPAAHRTFSA-VFSI 60
           MW++ A +RPTLHNFTNSHR+ADESMFT+T+ FPIYA AN+         RTFS+ +F+I
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNR--------RTFSSSIFNI 60

Query: 61  IRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           IRAPFSILSCFAPP VH S D FWLS DHYFASTISE NHLMVSDGMRYA+L+
Sbjct: 61  IRAPFSILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of CmaCh20G006650 vs. TrEMBL
Match: A0A067KF26_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17
Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMF------TTTEFPIYAVANHHHHRRPAAHRTFSA 60
           MWR +A +R  +HN   S RVADESMF        TEFPI         +R      FSA
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIG----FSA 60

Query: 61  VFSIIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           +F I+ APFS+LSCF+  P  +  D  W+S  H FA  ISE NHLMV+D MRYA+L+
Sbjct: 61  IFRIVLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

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BLAST of CmaCh20G006650 vs. TrEMBL
Match: F6HII7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.1e-15
Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMF---TTTEFPIYAVANHHHHRRPAAHRTFSAVFS 60
           MW ++AA+R    N   S RVADE+MF      E PI+        RR      FSAV+S
Sbjct: 1   MWHMLAAMRRNFQNIRKSPRVADENMFGGGNQAELPIFG---RDMERRARGWDGFSAVYS 60

Query: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           I+R P S+LSCF+ P V + AD  W+S D    + ISE NHLMVSD MRYA+L+
Sbjct: 61  IVRVPLSLLSCFSHPHV-NGADGVWVSGDF---AHISEMNHLMVSDSMRYAILM 107

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BLAST of CmaCh20G006650 vs. TrEMBL
Match: A0A118K0Z8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019653 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMF---TTTEFPIYAVANHHHHRRPAAHRTFSAVFS 60
           M R++A++R  +     S +VADE+MF      EFP+ A      HR        S ++S
Sbjct: 1   MMRVLASMRHNIKKMRKSTKVADENMFGEGNGVEFPVIA------HRTRQGWNGLSFIYS 60

Query: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           IIRAP S+LSC +  P H++AD  W+S +    + ISE NHLMVSD MRYA+L+
Sbjct: 61  IIRAPISLLSCLSSHPPHAAADGVWVSGEF---ARISEINHLMVSDSMRYAILM 105

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BLAST of CmaCh20G006650 vs. TrEMBL
Match: A0A0D2M1L2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G219600 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT----EFPIYAVANHHHHRRPAAHRTFSAVF 60
           MWR++  LR  L N   +HRVADE+M        E PI+      H     +   FS + 
Sbjct: 1   MWRMLVVLRRNLQNIKKTHRVADENMVNNNNNGGEMPIFINRRRSH----GSWNGFSVIC 60

Query: 61  SIIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           S++RAP S++SC + P V+ + D  W+S+ H FA  ISE NHLMVSD MRYA+L+
Sbjct: 61  SVVRAPLSLVSCLSQPHVNGT-DGVWVSS-HEFAQ-ISEMNHLMVSDSMRYAILM 108

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BLAST of CmaCh20G006650 vs. TAIR10
Match: AT5G35732.1 (AT5G35732.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMF--TTTEFPIYAVANHHHHRRPAAHRTFSAVFSI 60
           M ++++ LR  L N   S RVAD++    +T+      VAN    RR      F++V  I
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANG---RRDG----FNSV--I 60

Query: 61  IRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           +R PFSI+SCFA P V S  D  W+S D+    +ISE NHLMVSD MRYA+L+
Sbjct: 61  MRFPFSIISCFAVPRV-SGTDGLWVSGDY---GSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of CmaCh20G006650 vs. TAIR10
Match: AT2G04795.1 (AT2G04795.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-11
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRPAAHRTFSAVFSIIR 60
           M ++++ LR  L N   S RVADES   +T        N  H     ++        I++
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPST------TVNGDHGGGNGSNG------GIMK 60

Query: 61  APFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
            P SI+SCF+ P V S AD  W+S D+     +SE NHLMV DGMRYA+L+
Sbjct: 61  FPLSIMSCFSVPRV-SRADGVWVSGDY---GRVSEVNHLMVCDGMRYALLM 95

[Close]

BLAST of CmaCh20G006650 vs. NCBI nr
Match: gi|778712310|ref|XP_011656875.1| (PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 81/113 (71.68%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTE-FPIYAVANHHHHRRPAAHRTFSA-VFSI 60
           MW++ A +RPTLHNFTNSHR+ADESMFT+T+ FPIYA AN+         RTFS+ +F+I
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNR--------RTFSSSIFNI 60

Query: 61  IRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           IRAPFSILSCFAPP VH S D FWLS DHYFASTISE NHLMVSDGMRYA+L+
Sbjct: 61  IRAPFSILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of CmaCh20G006650 vs. NCBI nr
Match: gi|659111908|ref|XP_008455967.1| (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 4.6e-36
Identity = 81/113 (71.68%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTE-FPIYAVANHHHHRRPAAHRTFS-AVFSI 60
           MWR+ A +RPTLHNFTN+HR+ADESMFTTT+ FP YA A ++        RTFS A+F+I
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANNR-------RTFSTAIFNI 60

Query: 61  IRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           IRAPFSILSCFAPP VH S D FWLS DHYFASTISE NHLMVSDGMRYA+L+
Sbjct: 61  IRAPFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of CmaCh20G006650 vs. NCBI nr
Match: gi|802658798|ref|XP_012080701.1| (PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMF------TTTEFPIYAVANHHHHRRPAAHRTFSA 60
           MWR +A +R  +HN   S RVADESMF        TEFPI         +R      FSA
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIG----FSA 60

Query: 61  VFSIIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           +F I+ APFS+LSCF+  P  +  D  W+S  H FA  ISE NHLMV+D MRYA+L+
Sbjct: 61  IFRIVLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

[Close]

BLAST of CmaCh20G006650 vs. NCBI nr
Match: gi|731409715|ref|XP_010657294.1| (PREDICTED: uncharacterized protein LOC100267059 [Vitis vinifera])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMF---TTTEFPIYAVANHHHHRRPAAHRTFSAVFS 60
           MW ++AA+R    N   S RVADE+MF      E PI+        RR      FSAV+S
Sbjct: 1   MWHMLAAMRRNFQNIRKSPRVADENMFGGGNQAELPIFG---RDMERRARGWDGFSAVYS 60

Query: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           I+R P S+LSCF+ P V + AD  W+S D    + ISE NHLMVSD MRYA+L+
Sbjct: 61  IVRVPLSLLSCFSHPHV-NGADGVWVSGDF---AHISEMNHLMVSDSMRYAILM 107

[Close]

BLAST of CmaCh20G006650 vs. NCBI nr
Match: gi|1012201922|ref|XP_015973432.1| (PREDICTED: uncharacterized protein LOC107496640 [Arachis duranensis])

HSP 1 Score: 85.1 bits (209), Expect = 8.5e-14
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRPAAHRTFSAVFSIIR 60
           MWR++AA+   L +   S +VADESMF         V  H + RR   H  FS + SI++
Sbjct: 1   MWRVLAAVARNLQSTKKSSKVADESMFEGANGVEIHVFGHENGRR--GHGGFSIIHSILQ 60

Query: 61  APFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLI 112
           AP SILSC + P V+ S D  W++T  +  S ISE NHLMVSD MRYA+L+
Sbjct: 61  APISILSCVSHPRVNGS-DGIWVTTGEF--SQISEMNHLMVSDSMRYAILM 106

The following BLAST results are available for this feature:

BLAST of CmaCh20G006650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G006650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFS1_CUCSA	1.4e-36	71.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1	[more]
A0A067KF26_JATCU	7.5e-17	47.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1	[more]
F6HII7_VITVI	9.1e-15	47.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=...	[more]
A0A118K0Z8_CYNCS	1.7e-13	42.98	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019653 PE=4 ...	[more]
A0A0D2M1L2_GOSRA	1.7e-13	43.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G219600 PE=4 SV=1	[more]

BLAST of CmaCh20G006650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35732.1	1.4e-11	44.25	unknown protein	[more]
AT2G04795.1	7.1e-11	39.64	unknown protein	[more]

BLAST of CmaCh20G006650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778712310\|ref\|XP_011656875.1\|	2.1e-36	71.68	PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus]	[more]
gi\|659111908\|ref\|XP_008455967.1\|	4.6e-36	71.68	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo]	[more]
gi\|802658798\|ref\|XP_012080701.1\|	1.1e-16	47.86	PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]	[more]
gi\|731409715\|ref\|XP_010657294.1\|	1.3e-14	47.37	PREDICTED: uncharacterized protein LOC100267059 [Vitis vinifera]	[more]
gi\|1012201922\|ref\|XP_015973432.1\|	8.5e-14	46.85	PREDICTED: uncharacterized protein LOC107496640 [Arachis duranensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G006650.1	CmaCh20G006650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G006650	Cucsa.120440	Cucumber (Gy14) v1	cgycmaB0303
CmaCh20G006650	Cla015658	Watermelon (97103) v1	cmawmB527
CmaCh20G006650	MELO3C019368	Melon (DHL92) v3.5.1	cmameB494
CmaCh20G006650	ClCG02G002530	Watermelon (Charleston Gray)	cmawcgB483
CmaCh20G006650	ClCG02G009450	Watermelon (Charleston Gray)	cmawcgB493
CmaCh20G006650	CSPI07G02960	Wild cucumber (PI 183967)	cmacpiB582
CmaCh20G006650	CSPI06G08990	Wild cucumber (PI 183967)	cmacpiB561
CmaCh20G006650	CmoCh19G008950	Cucurbita moschata (Rifu)	cmacmoB549
CmaCh20G006650	Lsi11G013770	Bottle gourd (USVL1VR-Ls)	cmalsiB515
CmaCh20G006650	Cp4.1LG04g03990	Cucurbita pepo (Zucchini)	cmacpeB575
CmaCh20G006650	Cp4.1LG15g07070	Cucurbita pepo (Zucchini)	cmacpeB560
CmaCh20G006650	MELO3C019368.2	Melon (DHL92) v3.6.1	cmamedB574
CmaCh20G006650	CsaV3_6G009360	Cucumber (Chinese Long) v3	cmacucB0667
CmaCh20G006650	CsaV3_7G002850	Cucumber (Chinese Long) v3	cmacucB0687
CmaCh20G006650	Cla97C02G035790	Watermelon (97103) v2	cmawmbB581
CmaCh20G006650	Cla97C02G029010	Watermelon (97103) v2	cmawmbB572
CmaCh20G006650	Bhi05G001266	Wax gourd	cmawgoB0678
CmaCh20G006650	CsGy6G009110	Cucumber (Gy14) v2	cgybcmaB791
CmaCh20G006650	Carg18060	Silver-seed gourd	carcmaB1475
CmaCh20G006650	Carg16090	Silver-seed gourd	carcmaB0486
CmaCh20G006650	Carg04163	Silver-seed gourd	carcmaB0280

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G006650	CmaCh11G012720	Cucurbita maxima (Rimu)	cmacmaB155
CmaCh20G006650	CmaCh19G008820	Cucurbita maxima (Rimu)	cmacmaB445

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G006650	Wax gourd	cmawgoB0695
CmaCh20G006650	Cucurbita maxima (Rimu)	cmacmaB471
CmaCh20G006650	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G006650	Cucurbita moschata (Rifu)	cmacmoB556
CmaCh20G006650	Cucumber (Chinese Long) v2	cmacuB555
CmaCh20G006650	Cucumber (Chinese Long) v2	cmacuB576
CmaCh20G006650	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G006650	Cucurbita pepo (Zucchini)	cmacpeB588
CmaCh20G006650	Bottle gourd (USVL1VR-Ls)	cmalsiB509
CmaCh20G006650	Cucumber (Gy14) v2	cgybcmaB957
CmaCh20G006650	Silver-seed gourd	carcmaB1121