Cla97C02G035790 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G035790
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	At5g35732
Location	Cla97Chr02 : 13318272 .. 13318595 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

mRNA sequence

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Coding sequence (CDS)

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Protein sequence

MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM

Homology

[Close]

BLAST of Cla97C02G035790 vs. NCBI nr
Match: XP_008455967.1 (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-43
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTN+HR+ADESMFTTTDQFP YAAA  ++RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAA-ANNRRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Cla97C02G035790 vs. NCBI nr
Match: XP_011656875.1 (PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical protein Csa_6G110050 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAA  ++RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAA--NNRRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Cla97C02G035790 vs. NCBI nr
Match: XP_022944204.1 (uncharacterized protein LOC111448722 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-42
Identity = 92/112 (82.14%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHH-HRRPFS----AAIFSII 60
           MWRLI+ALRPTLHNFTNSHRVADESMFTTT +FPIYA A+HH   RP +    AA+FSII
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVANHHXXXRPAAHRTIAAVFSII 60

Query: 61  RAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           RAPFSILSCFAPPPVH SAD FWLS DHYFASTISETN LMVSDGMRYA+LM
Sbjct: 61  RAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Cla97C02G035790 vs. NCBI nr
Match: XP_022985817.1 (uncharacterized protein LOC111483748 [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 90/113 (79.65%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHH------RRPFSAAIFSI 60
           MWRLI+ALRPTLHNFTNSHRVADESMFTTT +FPIYA A+          R FS A+FSI
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVANXXXXXXPAAHRTFS-AVFSI 60

Query: 61  IRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           IRAPFSILSCFAPPPVH SAD FWLS DHYFASTISETN LMVSDGMRYA+LM
Sbjct: 61  IRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Cla97C02G035790 vs. NCBI nr
Match: XP_023513038.1 (uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 2.8e-39
Identity = 90/114 (78.95%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAA-------DHHHRRPFSAAIFS 60
           MWRLI+ALRPTLHNFTNSHRVADESMFTTT +FPIYA A            R FS A+FS
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVAXXXXXXXXXXXHRTFS-AVFS 60

Query: 61  IIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           IIRAPFSILSCFAPPPVH SAD FWLS DHYFASTISETN LMVSDGMRYA+LM
Sbjct: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 112

[Close]

BLAST of Cla97C02G035790 vs. TrEMBL
Match: tr|A0A1S3C290|A0A1S3C290_CUCME (uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.2e-43
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTN+HR+ADESMFTTTDQFP YAAA  ++RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAA-ANNRRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Cla97C02G035790 vs. TrEMBL
Match: tr|A0A0A0KFS1|A0A0A0KFS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAA  ++RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAA--NNRRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Cla97C02G035790 vs. TrEMBL
Match: tr|A0A067KF26|A0A067KF26_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13803 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMF-----TTTDQFPIYAAADHHHRRPFS-AAIFSI 60
           MWR ++ +R  +HN   S RVADESMF         +FPI  A +   R+    +AIF I
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIGFSAIFRI 60

Query: 61  IRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           + APFS+LSCF+  P     D  W+SG H FA  ISE N LMV+D MRYAILM
Sbjct: 61  VLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

[Close]

BLAST of Cla97C02G035790 vs. TrEMBL
Match: tr|A0A251TML0|A0A251TML0_HELAN (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0306371 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.4e-15
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTD--QFPIYAAADHHHRRPFSAAIFSIIRAP 60
           M R+++A+R  + N   SH+VADE+MF   +  +FPI A      R  FS  I SI+RAP
Sbjct: 1   MRRILAAMRQNIENMRKSHKVADENMFGEGNGTEFPIIAHHTRQGRNGFS-LIHSIVRAP 60

Query: 61  FSILSCFAP-PPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
            S++SC +  P ++ + D  W+SGDH   + +SE N LMVSD MRYAILM
Sbjct: 61  LSLVSCISSHPHINGATDGVWVSGDH---TRVSEVNHLMVSDSMRYAILM 106

[Close]

BLAST of Cla97C02G035790 vs. TrEMBL
Match: tr|A0A2P4J6M9|A0A2P4J6M9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_19880 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTD--QFPIYAAADHHHRRPFS--AAIFSIIR 60
           MWR+++A+   L N   S RVADE+MF   +  + PIYA      +R ++  + I+S++R
Sbjct: 1   MWRILAAVGRNLKNIKKSPRVADENMFAAGNGAELPIYARDREIRQRRWNGFSFIYSVVR 60

Query: 61  APFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           AP SILSCF+ P V+  AD  W+SG+    + IS+ N LMVSD MRYAILM
Sbjct: 61  APISILSCFSHPHVN-GADGVWVSGEF---AQISDMNHLMVSDSMRYAILM 107

[Close]

BLAST of Cla97C02G035790 vs. TAIR10
Match: AT5G35732.1 (unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-13
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVAD++   ++          +  R  F++    I+R PFS
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV---IMRFPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCFA P V    D  W+SGD+    +ISE N LMVSD MRYAILM
Sbjct: 61  IISCFAVPRV-SGTDGLWVSGDY---GSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of Cla97C02G035790 vs. TAIR10
Match: AT2G04795.1 (unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 5.5e-13
Identity = 46/107 (42.99%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVADES   +T         DH      +     I++ P S
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTT-----VNGDHGGGNGSNG---GIMKFPLS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCF+ P V R AD  W+SGD+     +SE N LMV DGMRYA+LM
Sbjct: 61  IMSCFSVPRVSR-ADGVWVSGDY---GRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of Cla97C02G035790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455967.1	9.4e-43	82.24	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo]	[more]
XP_011656875.1	1.6e-42	81.31	PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hy...	[more]
XP_022944204.1	6.1e-42	82.14	uncharacterized protein LOC111448722 [Cucurbita moschata]	[more]
XP_022985817.1	1.3e-39	79.65	uncharacterized protein LOC111483748 [Cucurbita maxima]	[more]
XP_023513038.1	2.8e-39	78.95	uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C02G035790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C290\|A0A1S3C290_CUCME	6.2e-43	82.24	uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=...	[more]
tr\|A0A0A0KFS1\|A0A0A0KFS1_CUCSA	1.1e-42	81.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1	[more]
tr\|A0A067KF26\|A0A067KF26_JATCU	5.9e-17	48.67	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13803 PE=4 SV=1	[more]
tr\|A0A251TML0\|A0A251TML0_HELAN	9.4e-15	46.36	Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0306371 PE...	[more]
tr\|A0A2P4J6M9\|A0A2P4J6M9_QUESU	1.6e-14	46.85	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_19880 PE=4 SV=1	[more]

BLAST of Cla97C02G035790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G035790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35732.1	1.9e-13	42.99	unknown protein	[more]
AT2G04795.1	5.5e-13	42.99	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G035790.1	Cla97C02G035790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G035790	Cla015658	Watermelon (97103) v1	wmwmbB333
Cla97C02G035790	MELO3C019368	Melon (DHL92) v3.5.1	mewmbB111
Cla97C02G035790	ClCG02G002530	Watermelon (Charleston Gray)	wcgwmbB148
Cla97C02G035790	ClCG02G009450	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G035790	CSPI06G08990	Wild cucumber (PI 183967)	cpiwmbB466
Cla97C02G035790	Cucsa.120440	Cucumber (Gy14) v1	cgywmbB175
Cla97C02G035790	CmaCh20G006650	Cucurbita maxima (Rimu)	cmawmbB581
Cla97C02G035790	CmoCh19G008950	Cucurbita moschata (Rifu)	cmowmbB511
Cla97C02G035790	CsGy6G009110	Cucumber (Gy14) v2	cgybwmbB420
Cla97C02G035790	MELO3C019368.2	Melon (DHL92) v3.6.1	medwmbB103
Cla97C02G035790	Carg16090	Silver-seed gourd	carwmbB0363
Cla97C02G035790	CsaV3_6G009360	Cucumber (Chinese Long) v3	cucwmbB460
Cla97C02G035790	Bhi05G001266	Wax gourd	wgowmbB256

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla97C02G035790	Cla97C02G029010	Watermelon (97103) v2	wmbwmbB091

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G035790	Silver-seed gourd	carwmbB0845
Cla97C02G035790	Cucurbita maxima (Rimu)	cmawmbB631
Cla97C02G035790	Cucurbita moschata (Rifu)	cmowmbB560
Cla97C02G035790	Cucurbita moschata (Rifu)	cmowmbB604
Cla97C02G035790	Cucumber (Chinese Long) v2	cuwmbB443
Cla97C02G035790	Bottle gourd (USVL1VR-Ls)	lsiwmbB046
Cla97C02G035790	Wax gourd	wgowmbB355