CSPI06G08990 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G08990
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAt5g35732
LocationChr6 : 7560931 .. 7561796 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGTTTGTTATTTTATAATTTATTTTGGAGGTTAGGGATGATGACCTTTATAAAAGGAAGCGGGAAGACCTAGCAAGACACACTAGCCAAGCCAAGTAGCCATACCATAAACTCAGCACGACCACAAAAAGAAGCCCTCCAACTTATACTATATTTCTTTTCCTATTTGTCAAATCTAAAACCCCCCCTCCCCCATCCAATTCTCTCTCTTCCCTTCACTTTCTTCTCCAAACCCCCCATTAATTTATTCCCTCCTCCTCCCTTAGGATCTACAACCCAAAAAAACAATAATATAGACACATACATACATATATACACACCCATCATGTGGCAGGTGTTCGCACTTATTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCATTGCTGATGAGAGTATGTTCACTTCAACTGATCAATTCCCAATTTACGCTGCCGCCAACAACCGTCGAACCTTCTCCTCCTCCATCTTCAACATCATTCGTGCTCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCCGCCGTTCACCGCTCCCCCGACGCCTTCTGGCTCTCCGGTGACCACTATTTTGCCTCCACTATTTCTGAGATCAACCACCTTATGGTAAGCGATGGCATGCGTTACGCCATATTGATGTAAAAGCTCTAAAACTAATCTTACCAAGCACACACATATATATGTATTAGAAGTACTTTAGCTTTTATTTTGATGGTAACCTGATGAATAATCACTTGGGTTTTTGTTTTTGTTTGTCTCTTTTTTGGTTAAATTTGATTTAGCGTATTATGTTTCTAATTTGTTACCAGTACCATAATCAAATTAAATTTATATATAAGAAAAAAAAGTTACTCTTTTCCCAAG

mRNA sequence

ATGTGGCAGGTGTTCGCACTTATTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCATTGCTGATGAGAGTATGTTCACTTCAACTGATCAATTCCCAATTTACGCTGCCGCCAACAACCGTCGAACCTTCTCCTCCTCCATCTTCAACATCATTCGTGCTCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCCGCCGTTCACCGCTCCCCCGACGCCTTCTGGCTCTCCGGTGACCACTATTTTGCCTCCACTATTTCTGAGATCAACCACCTTATGGTAAGCGATGGCATGCGTTACGCCATATTGATGTAA

Coding sequence (CDS)

ATGTGGCAGGTGTTCGCACTTATTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCATTGCTGATGAGAGTATGTTCACTTCAACTGATCAATTCCCAATTTACGCTGCCGCCAACAACCGTCGAACCTTCTCCTCCTCCATCTTCAACATCATTCGTGCTCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCCGCCGTTCACCGCTCCCCCGACGCCTTCTGGCTCTCCGGTGACCACTATTTTGCCTCCACTATTTCTGAGATCAACCACCTTATGGTAAGCGATGGCATGCGTTACGCCATATTGATGTAA
Homology
[Close]
BLAST of CSPI06G08990 vs. TrEMBL
Match: A0A0A0KFS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60
           MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60

Query: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM
Sbjct: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]
BLAST of CSPI06G08990 vs. TrEMBL
Match: A0A067KF26_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTD-----QFPIYAA---ANNRRTFSSSIFNI 60
           MW+  A IR  +HN   S R+ADESMF   +     +FPI  A   A  +R   S+IF I
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIGFSAIFRI 60

Query: 61  IRAPFSILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           + APFS+LSCF+        D  W+SG H FA  ISE+NHLMV+D MRYAILM
Sbjct: 61  VLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

[Close]
BLAST of CSPI06G08990 vs. TrEMBL
Match: M4F2T6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60
           M Q+ +++R  L N   S R+ADE+   ST Q     A N RR  ++++  ++R PFSI+
Sbjct: 1   MTQMLSILRRNLQNLRKSPRVADETEMASTTQGAGVVAHNERRDGANAV--MMRFPFSII 60

Query: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           SCFA P V  + D  W+SGD+   +++SE+NHLMVSDGMRYAILM
Sbjct: 61  SCFAVPRVSGT-DGLWMSGDY---ASVSEVNHLMVSDGMRYAILM 99

[Close]
BLAST of CSPI06G08990 vs. TrEMBL
Match: A0A0D3BZ79_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-15
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60
           M Q+ +++R  L N   S R+ADE+   ST Q     A N RR  ++++  ++R PFSI+
Sbjct: 1   MTQMLSILRRNLQNLRKSPRVADETEMASTTQGAGVVAHNERRDGANAV--MMRFPFSII 60

Query: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           SCFA P V  + D  W+SGD+   +++SE+NHLM SDGMRYAILM
Sbjct: 61  SCFAVPRVSGT-DGLWMSGDY---ASVSEVNHLMASDGMRYAILM 99

[Close]
BLAST of CSPI06G08990 vs. TrEMBL
Match: A0A0B2R259_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038234 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-14
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFS-SSIFNIIRAPFSI 60
           MW++ A +   L N   S ++ADESMF + +   ++     RR      + +I++AP SI
Sbjct: 1   MWRLLAAVARNLQNTRKSSKVADESMFEAGNGVELFGHERGRRQHGWGLVCSILQAPISI 60

Query: 61  LSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           LSC + P V+   D  W++G+    S +SE+NHLMVSD MRYAILM
Sbjct: 61  LSCVSQPQVNNGSDGVWVTGEF---SQVSEMNHLMVSDSMRYAILM 103

[Close]
BLAST of CSPI06G08990 vs. TAIR10
Match: AT5G35732.1 (AT5G35732.1 unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 4.1e-16
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMF-TSTDQFPIYAAANNRRTFSSSIFNIIRAPFSI 60
           M Q+ +++R  L N   S R+AD++   +ST        AN RR   +S+  I+R PFSI
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV--IMRFPFSI 60

Query: 61  LSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           +SCFA P V  + D  W+SGD+    +ISE+NHLMVSD MRYAILM
Sbjct: 61  ISCFAVPRVSGT-DGLWVSGDY---GSISEVNHLMVSDSMRYAILM 100

[Close]
BLAST of CSPI06G08990 vs. TAIR10
Match: AT2G04795.1 (AT2G04795.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-14
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60
           M ++ +++R  L N   S R+ADES   ST     +   N       S   I++ P SI+
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDHGGGNG------SNGGIMKFPLSIM 60

Query: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           SCF+ P V R+ D  W+SGD+     +SE+NHLMV DGMRYA+LM
Sbjct: 61  SCFSVPRVSRA-DGVWVSGDY---GRVSEVNHLMVCDGMRYALLM 95

[Close]
BLAST of CSPI06G08990 vs. NCBI nr
Match: gi|778712310|ref|XP_011656875.1| (PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 7.9e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60
           MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60

Query: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM
Sbjct: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]
BLAST of CSPI06G08990 vs. NCBI nr
Match: gi|659111908|ref|XP_008455967.1| (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-49
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAA-ANNRRTFSSSIFNIIRAPFSI 60
           MW+VFA+IRPTLHNFTN+HRIADESMFT+TDQFP YAA ANNRRTFS++IFNIIRAPFSI
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANNRRTFSTAIFNIIRAPFSI 60

Query: 61  LSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           LSCFAPP+VHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM
Sbjct: 61  LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]
BLAST of CSPI06G08990 vs. NCBI nr
Match: gi|802658798|ref|XP_012080701.1| (PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17
Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTD-----QFPIYAA---ANNRRTFSSSIFNI 60
           MW+  A IR  +HN   S R+ADESMF   +     +FPI  A   A  +R   S+IF I
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIGFSAIFRI 60

Query: 61  IRAPFSILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           + APFS+LSCF+        D  W+SG H FA  ISE+NHLMV+D MRYAILM
Sbjct: 61  VLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

[Close]
BLAST of CSPI06G08990 vs. NCBI nr
Match: gi|685384083|ref|XP_009124259.1| (PREDICTED: uncharacterized protein LOC103849195 [Brassica rapa])

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60
           M Q+ +++R  L N   S R+ADE+   ST Q     A N RR  ++++  ++R PFSI+
Sbjct: 1   MTQMLSILRRNLQNLRKSPRVADETEMASTTQGAGVVAHNERRDGANAV--MMRFPFSII 60

Query: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           SCFA P V  + D  W+SGD+   +++SE+NHLMVSDGMRYAILM
Sbjct: 61  SCFAVPRVSGT-DGLWMSGDY---ASVSEVNHLMVSDGMRYAILM 99

[Close]
BLAST of CSPI06G08990 vs. NCBI nr
Match: gi|922468272|ref|XP_013634187.1| (PREDICTED: uncharacterized protein LOC106339868 [Brassica oleracea var. oleracea])

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-15
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60
           M Q+ +++R  L N   S R+ADE+   ST Q     A N RR  ++++  ++R PFSI+
Sbjct: 1   MTQMLSILRRNLQNLRKSPRVADETEMASTTQGAGVVAHNERRDGANAV--MMRFPFSII 60

Query: 61  SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
           SCFA P V  + D  W+SGD+   +++SE+NHLM SDGMRYAILM
Sbjct: 61  SCFAVPRVSGT-DGLWMSGDY---ASVSEVNHLMASDGMRYAILM 99

The following BLAST results are available for this feature:
BLAST of CSPI06G08990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G08990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFS1_CUCSA5.5e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1[more]
A0A067KF26_JATCU1.8e-1749.56Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1[more]
M4F2T6_BRARP1.3e-1547.62Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0D3BZ79_BRAOL3.8e-1546.67Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A0B2R259_GLYSO5.6e-1441.51Uncharacterized protein OS=Glycine soja GN=glysoja_038234 PE=4 SV=1[more]
BLAST of CSPI06G08990 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35732.14.1e-1647.17 unknown protein[more]
AT2G04795.11.7e-1441.90 unknown protein[more]
BLAST of CSPI06G08990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778712310|ref|XP_011656875.1|7.9e-54100.00PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus][more]
gi|659111908|ref|XP_008455967.1|2.6e-4991.51PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo][more]
gi|802658798|ref|XP_012080701.1|2.6e-1749.56PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas][more]
gi|685384083|ref|XP_009124259.1|1.9e-1547.62PREDICTED: uncharacterized protein LOC103849195 [Brassica rapa][more]
gi|922468272|ref|XP_013634187.1|5.5e-1546.67PREDICTED: uncharacterized protein LOC106339868 [Brassica oleracea var. oleracea... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G08990.1CSPI06G08990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G08990Cla015658Watermelon (97103) v1cpiwmB535
CSPI06G08990MELO3C019368Melon (DHL92) v3.5.1cpimeB419
CSPI06G08990MELO3C018891Melon (DHL92) v3.5.1cpimeB457
CSPI06G08990ClCG02G002530Watermelon (Charleston Gray)cpiwcgB465
CSPI06G08990ClCG02G009450Watermelon (Charleston Gray)cpiwcgB473
CSPI06G08990Lsi11G013770Bottle gourd (USVL1VR-Ls)cpilsiB432
CSPI06G08990MELO3C019368.2Melon (DHL92) v3.6.1cpimedB414
CSPI06G08990MELO3C018891.2Melon (DHL92) v3.6.1cpimedB450
CSPI06G08990CsaV3_6G009360Cucumber (Chinese Long) v3cpicucB364
CSPI06G08990CsaV3_7G002850Cucumber (Chinese Long) v3cpicucB375
CSPI06G08990Cla97C02G029010Watermelon (97103) v2cpiwmbB456
CSPI06G08990Cla97C02G035790Watermelon (97103) v2cpiwmbB466
CSPI06G08990Bhi05G001266Wax gourdcpiwgoB566
CSPI06G08990Cucsa.120440Cucumber (Gy14) v1cgycpiB156
CSPI06G08990CmaCh20G006650Cucurbita maxima (Rimu)cmacpiB561
CSPI06G08990CmaCh19G008820Cucurbita maxima (Rimu)cmacpiB527
CSPI06G08990CmoCh19G008950Cucurbita moschata (Rifu)cmocpiB520
CSPI06G08990Cp4.1LG15g07070Cucurbita pepo (Zucchini)cpecpiB251
CSPI06G08990CsGy6G009110Cucumber (Gy14) v2cgybcpiB288
CSPI06G08990Carg16090Silver-seed gourdcarcpiB0381
CSPI06G08990Carg04163Silver-seed gourdcarcpiB0234
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI06G08990CSPI07G02960Wild cucumber (PI 183967)cpicpiB189
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G08990Silver-seed gourdcarcpiB0843
CSPI06G08990Wax gourdcpiwgoB613
CSPI06G08990Cucurbita maxima (Rimu)cmacpiB623
CSPI06G08990Cucurbita moschata (Rifu)cmocpiB616
CSPI06G08990Cucumber (Chinese Long) v2cpicuB314
CSPI06G08990Cucurbita pepo (Zucchini)cpecpiB294
CSPI06G08990Cucurbita pepo (Zucchini)cpecpiB757
CSPI06G08990Bottle gourd (USVL1VR-Ls)cpilsiB418