ClCG02G009450 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G009450
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 14141532 .. 14141855 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

mRNA sequence

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Coding sequence (CDS)

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Protein sequence

MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM

Homology

[Close]

BLAST of ClCG02G009450 vs. TrEMBL
Match: A0A0A0KFS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.4e-43
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAA++  RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANN--RRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of ClCG02G009450 vs. TrEMBL
Match: A0A067KF26_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMF-----TTTDQFPIYAAADHHHRRPFS-AAIFSI 60
           MWR ++ +R  +HN   S RVADESMF         +FPI  A +   R+    +AIF I
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIGFSAIFRI 60

Query: 61  IRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           + APFS+LSCF+  P     D  W+SG H FA  ISE N LMV+D MRYAILM
Sbjct: 61  VLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

[Close]

BLAST of ClCG02G009450 vs. TrEMBL
Match: F6HII7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQ--FPIYAAADHHHRRPFS--AAIFSIIR 60
           MW +++A+R    N   S RVADE+MF   +Q   PI+        R +   +A++SI+R
Sbjct: 1   MWHMLAAMRRNFQNIRKSPRVADENMFGGGNQAELPIFGRDMERRARGWDGFSAVYSIVR 60

Query: 61  APFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
            P S+LSCF+ P V+  AD  W+SGD    + ISE N LMVSD MRYAILM
Sbjct: 61  VPLSLLSCFSHPHVN-GADGVWVSGDF---AHISEMNHLMVSDSMRYAILM 107

[Close]

BLAST of ClCG02G009450 vs. TrEMBL
Match: A0A0B2R259_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038234 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MWRL++A+   L N   S +VADESMF   +   ++   +   R+     + SI++AP S
Sbjct: 1   MWRLLAAVARNLQNTRKSSKVADESMFEAGNGVELFGH-ERGRRQHGWGLVCSILQAPIS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSC + P V+  +D  W++G+    S +SE N LMVSD MRYAILM
Sbjct: 61  ILSCVSQPQVNNGSDGVWVTGEF---SQVSEMNHLMVSDSMRYAILM 103

[Close]

BLAST of ClCG02G009450 vs. TrEMBL
Match: A0A118K0Z8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019653 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTD--QFPIYAAADHHHRRPFSAA--IFSIIR 60
           M R+++++R  +     S +VADE+MF   +  +FP+ A   H  R+ ++    I+SIIR
Sbjct: 1   MMRVLASMRHNIKKMRKSTKVADENMFGEGNGVEFPVIA---HRTRQGWNGLSFIYSIIR 60

Query: 61  APFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           AP S+LSC +  P H +AD  W+SG+    + ISE N LMVSD MRYAILM
Sbjct: 61  APISLLSCLSSHPPHAAADGVWVSGEF---ARISEINHLMVSDSMRYAILM 105

[Close]

BLAST of ClCG02G009450 vs. TAIR10
Match: AT5G35732.1 (AT5G35732.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 46/107 (42.99%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVAD++   ++          +  R  F++ I   +R PFS
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSVI---MRFPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCFA P V    D  W+SGD+    +ISE N LMVSD MRYAILM
Sbjct: 61  IISCFAVPRVS-GTDGLWVSGDY---GSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of ClCG02G009450 vs. TAIR10
Match: AT2G04795.1 (AT2G04795.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-13
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVADES   +T         DH      +  I   ++ P S
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTT-----VNGDHGGGNGSNGGI---MKFPLS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCF+ P V R AD  W+SGD+     +SE N LMV DGMRYA+LM
Sbjct: 61  IMSCFSVPRVSR-ADGVWVSGDY---GRVSEVNHLMVCDGMRYALLM 95

[Close]

BLAST of ClCG02G009450 vs. NCBI nr
Match: gi|659111908|ref|XP_008455967.1| (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTN+HR+ADESMFTTTDQFP YAAA ++ RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-RRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of ClCG02G009450 vs. NCBI nr
Match: gi|778712310|ref|XP_011656875.1| (PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-43
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAA++  RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANN--RRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of ClCG02G009450 vs. NCBI nr
Match: gi|802658798|ref|XP_012080701.1| (PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMF-----TTTDQFPIYAAADHHHRRPFS-AAIFSI 60
           MWR ++ +R  +HN   S RVADESMF         +FPI  A +   R+    +AIF I
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIGFSAIFRI 60

Query: 61  IRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           + APFS+LSCF+  P     D  W+SG H FA  ISE N LMV+D MRYAILM
Sbjct: 61  VLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

[Close]

BLAST of ClCG02G009450 vs. NCBI nr
Match: gi|657979642|ref|XP_008381793.1| (PREDICTED: uncharacterized protein LOC103444614 [Malus domestica])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTT------TDQFPIYAAA-DHHH--RRP----- 60
           MW +++ +R  LHN   S RVADESM           + PI+ A  DHHH  RR      
Sbjct: 1   MWSMLATMRQNLHNIRKSPRVADESMVNVGAGNPAPAELPIFPAHHDHHHVDRRSLPRIR 60

Query: 61  ----FSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMR 108
               F++ ++S++  PFS++SCF+ P     AD  W SG+    S I+E NQLMVSD MR
Sbjct: 61  WIKGFNSLLYSVVLVPFSVISCFSQPHHVHGADGVWASGEF---SQITEMNQLMVSDSMR 120

[Close]

BLAST of ClCG02G009450 vs. NCBI nr
Match: gi|694377806|ref|XP_009365182.1| (PREDICTED: uncharacterized protein LOC103955039 [Pyrus x bretschneideri])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTT------TDQFPIYAAA-DHHH--RRP----- 60
           MW +++ +R  LHN   S RVADESM           + PI+ A  DHHH  RR      
Sbjct: 1   MWSMLTTMRQNLHNIRKSPRVADESMVNVGAGNPAPAELPIFPAHHDHHHVDRRSLLRIR 60

Query: 61  ----FSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMR 108
               F++ ++S++  PFS++SCF+ P     AD  W SG+    S I+E NQLMVSD MR
Sbjct: 61  WIKGFNSLLYSVVLVPFSVISCFSQPHHVHGADGVWASGEF---SQITEMNQLMVSDSMR 120

The following BLAST results are available for this feature:

BLAST of ClCG02G009450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFS1_CUCSA	3.4e-43	81.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1	[more]
A0A067KF26_JATCU	1.9e-17	48.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1	[more]
F6HII7_VITVI	1.5e-14	45.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=...	[more]
A0A0B2R259_GLYSO	1.6e-13	42.99	Uncharacterized protein OS=Glycine soja GN=glysoja_038234 PE=4 SV=1	[more]
A0A118K0Z8_CYNCS	2.1e-13	44.14	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019653 PE=4 ...	[more]

BLAST of ClCG02G009450 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35732.1	1.1e-13	42.99	unknown protein	[more]
AT2G04795.1	4.2e-13	42.99	unknown protein	[more]

BLAST of ClCG02G009450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111908\|ref\|XP_008455967.1\|	2.8e-43	82.24	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo]	[more]
gi\|778712310\|ref\|XP_011656875.1\|	4.8e-43	81.31	PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus]	[more]
gi\|802658798\|ref\|XP_012080701.1\|	2.7e-17	48.67	PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]	[more]
gi\|657979642\|ref\|XP_008381793.1\|	1.5e-15	43.20	PREDICTED: uncharacterized protein LOC103444614 [Malus domestica]	[more]
gi\|694377806\|ref\|XP_009365182.1\|	1.5e-15	43.20	PREDICTED: uncharacterized protein LOC103955039 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G009450.1	ClCG02G009450.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G009450	MELO3C019368	Melon (DHL92) v3.5.1	mewcgB109
ClCG02G009450	Cla015658	Watermelon (97103) v1	wcgwmB215
ClCG02G009450	Cla97C02G035790	Watermelon (97103) v2	wcgwmbB138
ClCG02G009450	Cla97C02G029010	Watermelon (97103) v2	wcgwmbB149
ClCG02G009450	CSPI06G08990	Wild cucumber (PI 183967)	cpiwcgB473
ClCG02G009450	Cucsa.120440	Cucumber (Gy14) v1	cgywcgB180
ClCG02G009450	CmaCh20G006650	Cucurbita maxima (Rimu)	cmawcgB493
ClCG02G009450	Lsi11G013770	Bottle gourd (USVL1VR-Ls)	lsiwcgB096
ClCG02G009450	CsGy6G009110	Cucumber (Gy14) v2	cgybwcgB414
ClCG02G009450	MELO3C019368.2	Melon (DHL92) v3.6.1	medwcgB104
ClCG02G009450	Carg16090	Silver-seed gourd	carwcgB0340
ClCG02G009450	Carg04163	Silver-seed gourd	carwcgB0193
ClCG02G009450	CsaV3_6G009360	Cucumber (Chinese Long) v3	cucwcgB471

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG02G009450	ClCG02G002530	Watermelon (Charleston Gray)	wcgwcgB120

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G009450	Wax gourd	wcgwgoB285
ClCG02G009450	Cucurbita maxima (Rimu)	cmawcgB543
ClCG02G009450	Cucurbita moschata (Rifu)	cmowcgB493
ClCG02G009450	Cucurbita moschata (Rifu)	cmowcgB541
ClCG02G009450	Cucumber (Chinese Long) v2	cuwcgB453
ClCG02G009450	Cucurbita pepo (Zucchini)	cpewcgB258
ClCG02G009450	Cucurbita pepo (Zucchini)	cpewcgB646
ClCG02G009450	Bottle gourd (USVL1VR-Ls)	lsiwcgB047
ClCG02G009450	Silver-seed gourd	carwcgB0783