Cla014392 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014392
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 30440411 .. 30440704 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGA

mRNA sequence

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGA

Coding sequence (CDS)

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGA

Protein sequence

MALRWLLHSTSYLLGNPTEVHGYGEERSSKVKKGYEEICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY

Homology

[Close]

BLAST of Cla014392 vs. TrEMBL
Match: A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-43
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 1  MALRWLLHSTSYLLGNPTEVHGYGEERSSKVKKGYEEICTSGFQMPLHYPRYNKADYQKM 60
          M LR LLHS SYLLGNP E H YGEERSSK KKGYEE+C SGFQMPLHYPRY K+DYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]

BLAST of Cla014392 vs. TrEMBL
Match: A0A061GHA6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030413 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 68/121 (56.20%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPT------------------EVHGYGEERSSKVKKGYE------ 60
           MALRW +HS  ++LG P                   E H  G  RSSKV  G +      
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNGEQVSTQTA 60

Query: 61  EICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 98
           E+  SGFQMPLHYPRY KADY+KMEEWK+D+LL+EYGLSF+G+L+EKRA+AMGAFLWPDQ
Sbjct: 61  EMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPDQ 120

[Close]

BLAST of Cla014392 vs. TrEMBL
Match: A0A067GFM8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045350mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPTE-------VHGY-----------GEERSSKVKKGYE---EIC 60
           MALRW+LH+  ++LG+  +       V GY           G    SKV  G     E C
Sbjct: 1   MALRWVLHTACHVLGHQNDNKIECNGVVGYQNDHHHQVQVNGVSSDSKVSDGLSQSVEAC 60

Query: 61  TSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 98
            SGFQ+PLHYPRY+KADY+KME+WKLD+LL+EYGL FQG+ +EKRAFAMGAFLWPDQY
Sbjct: 61  ASGFQLPLHYPRYSKADYEKMEDWKLDMLLREYGLCFQGTPDEKRAFAMGAFLWPDQY 118

[Close]

BLAST of Cla014392 vs. TrEMBL
Match: I1MFQ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117600 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.2e-27
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPT---------EVHGY---GEERSSK---VKKGYEEI--C--TS 60
           MALRW+LHS  ++LG PT         ++ GY   GE +S K   +   + E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLSNNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DY+ MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

[Close]

BLAST of Cla014392 vs. TrEMBL
Match: A0A0B2RLN7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009934 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-27
Identity = 66/115 (57.39%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPT---------EVHGYGEERSSKVKKG------YEEI--C--TS 60
           MALRW+LHS  ++LG PT         ++ GY     +K  KG      + E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLANNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DY+ MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

[Close]

BLAST of Cla014392 vs. NCBI nr
Match: gi|778720128|ref|XP_011658113.1| (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 1  MALRWLLHSTSYLLGNPTEVHGYGEERSSKVKKGYEEICTSGFQMPLHYPRYNKADYQKM 60
          M LR LLHS SYLLGNP E H YGEERSSK KKGYEE+C SGFQMPLHYPRY K+DYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]

BLAST of Cla014392 vs. NCBI nr
Match: gi|590627017|ref|XP_007026334.1| (Uncharacterized protein TCM_030413 [Theobroma cacao])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 68/121 (56.20%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPT------------------EVHGYGEERSSKVKKGYE------ 60
           MALRW +HS  ++LG P                   E H  G  RSSKV  G +      
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNGEQVSTQTA 60

Query: 61  EICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 98
           E+  SGFQMPLHYPRY KADY+KMEEWK+D+LL+EYGLSF+G+L+EKRA+AMGAFLWPDQ
Sbjct: 61  EMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPDQ 120

[Close]

BLAST of Cla014392 vs. NCBI nr
Match: gi|641859833|gb|KDO78523.1| (hypothetical protein CISIN_1g045350mg [Citrus sinensis])

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPTE-------VHGY-----------GEERSSKVKKGYE---EIC 60
           MALRW+LH+  ++LG+  +       V GY           G    SKV  G     E C
Sbjct: 1   MALRWVLHTACHVLGHQNDNKIECNGVVGYQNDHHHQVQVNGVSSDSKVSDGLSQSVEAC 60

Query: 61  TSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 98
            SGFQ+PLHYPRY+KADY+KME+WKLD+LL+EYGL FQG+ +EKRAFAMGAFLWPDQY
Sbjct: 61  ASGFQLPLHYPRYSKADYEKMEDWKLDMLLREYGLCFQGTPDEKRAFAMGAFLWPDQY 118

[Close]

BLAST of Cla014392 vs. NCBI nr
Match: gi|571517919|ref|XP_006597610.1| (PREDICTED: uncharacterized protein LOC102663856 [Glycine max])

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-27
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPT---------EVHGY---GEERSSK---VKKGYEEI--C--TS 60
           MALRW+LHS  ++LG PT         ++ GY   GE +S K   +   + E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLSNNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DY+ MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

[Close]

BLAST of Cla014392 vs. NCBI nr
Match: gi|734404432|gb|KHN32943.1| (hypothetical protein glysoja_009934 [Glycine soja])

HSP 1 Score: 127.9 bits (320), Expect = 9.8e-27
Identity = 66/115 (57.39%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 1   MALRWLLHSTSYLLGNPT---------EVHGYGEERSSKVKKG------YEEI--C--TS 60
           MALRW+LHS  ++LG PT         ++ GY     +K  KG      + E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLANNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DY+ MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

The following BLAST results are available for this feature:

BLAST of Cla014392 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMW8_CUCSA	8.9e-43	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1	[more]
A0A061GHA6_THECC	2.1e-28	56.20	Uncharacterized protein OS=Theobroma cacao GN=TCM_030413 PE=4 SV=1	[more]
A0A067GFM8_CITSI	1.4e-27	55.93	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045350mg PE=4 SV=1	[more]
I1MFQ9_SOYBN	5.2e-27	58.26	Uncharacterized protein OS=Glycine max GN=GLYMA_15G117600 PE=4 SV=1	[more]
A0A0B2RLN7_GLYSO	6.8e-27	57.39	Uncharacterized protein OS=Glycine soja GN=glysoja_009934 PE=4 SV=1	[more]

BLAST of Cla014392 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778720128\|ref\|XP_011658113.1\|	1.3e-42	87.50	PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus]	[more]
gi\|590627017\|ref\|XP_007026334.1\|	3.0e-28	56.20	Uncharacterized protein TCM_030413 [Theobroma cacao]	[more]
gi\|641859833\|gb\|KDO78523.1\|	2.0e-27	55.93	hypothetical protein CISIN_1g045350mg [Citrus sinensis]	[more]
gi\|571517919\|ref\|XP_006597610.1\|	7.5e-27	58.26	PREDICTED: uncharacterized protein LOC102663856 [Glycine max]	[more]
gi\|734404432\|gb\|KHN32943.1\|	9.8e-27	57.39	hypothetical protein glysoja_009934 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0015992	proton transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005351	sugar:proton symporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU22781	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU23217	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU24853	watermelon EST collection version 2.0	transcribed_cluster
WMU53114	watermelon EST collection version 2.0	transcribed_cluster
WMU65835	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014392	Cla014392.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU24853	WMU24853	transcribed_cluster
WMU23217	WMU23217	transcribed_cluster
WMU65835	WMU65835	transcribed_cluster
WMU22781	WMU22781	transcribed_cluster
WMU53114	WMU53114	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 36..97 score: 4.1
None	No IPR available	PANTHER	PTHR33513:SF2	SUBFAMILY NOT NAMED	coord: 36..97 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014392	Cla97C01G020890	Watermelon (97103) v2	wmwmbB234
Cla014392	Csa6G511080	Cucumber (Chinese Long) v2	cuwmB500
Cla014392	MELO3C007449	Melon (DHL92) v3.5.1	mewmB572
Cla014392	ClCG01G021310	Watermelon (Charleston Gray)	wcgwmB141
Cla014392	CSPI06G32880	Wild cucumber (PI 183967)	cpiwmB519
Cla014392	Cucsa.044650	Cucumber (Gy14) v1	cgywmB026
Cla014392	CmaCh07G003560	Cucurbita maxima (Rimu)	cmawmB826
Cla014392	CmaCh03G005860	Cucurbita maxima (Rimu)	cmawmB632
Cla014392	CmoCh07G003480	Cucurbita moschata (Rifu)	cmowmB816
Cla014392	CmoCh03G006110	Cucurbita moschata (Rifu)	cmowmB623
Cla014392	Lsi01G004930	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla014392	Cp4.1LG19g08000	Cucurbita pepo (Zucchini)	cpewmB482
Cla014392	Cp4.1LG10g09900	Cucurbita pepo (Zucchini)	cpewmB073
Cla014392	MELO3C007449.2	Melon (DHL92) v3.6.1	medwmB561
Cla014392	CsaV3_6G048330	Cucumber (Chinese Long) v3	cucwmB526

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014392	Cucurbita maxima (Rimu)	cmawmB389
Cla014392	Melon (DHL92) v3.5.1	mewmB165
Cla014392	Cucumber (Chinese Long) v2	cuwmB048
Cla014392	Cucumber (Gy14) v2	cgybwmB048
Cla014392	Cucumber (Gy14) v2	cgybwmB061
Cla014392	Cucumber (Gy14) v2	cgybwmB468
Cla014392	Silver-seed gourd	carwmB0407
Cla014392	Silver-seed gourd	carwmB0642
Cla014392	Cucumber (Chinese Long) v3	cucwmB064
Cla014392	Wax gourd	wgowmB432