WMU24853 (transcribed_cluster) Watermelon (97103) v1

NameWMU24853
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHeavy metal transport/detoxification superfamily protein
LocationChr1 : 30423358 .. 30595669 (+)
Sequence length457
The following sequences are available for this feature:

transcribed_cluster sequence

GGGGGCTCTTGAGCTTACAGCCATGGAGGAAAAGGTAGTGCTTATGGTGTTGAAAGCCGACCTCAAACTGTCGATCGTTGCTACAAGAAAGTCAAGAAAGTTCTTGCCAAATTTCCTCAAAATTAGAGACCAGCTTTATGATGAGAAAACAGGGGTTGGTGAAGATCAAAAGTTGTGTGTTGTACGCCTGAAAAAATCATGAAAGAAAATTTGTTCTAAAAGGCGATGGATCCATTAAAAGCATCGAAATCAAAAGAGCCCGAGAAAAAAGAAAGAAGAAGCGAAAAAAGAAGAGAAGAAAGAAGAAGAGAAGAAGAAGAAAGAAAGAAGAAGAAAGAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAAAGAAAAGAAAAAGAAAAAAGAA
BLAST of WMU24853 vs. NCBI nr
Match: gi|778720120|ref|XP_004134803.2| (PREDICTED: protein PXR1-like [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 73  DRCYKKVKKVLAKFPQN*RPAL**ENRGW*RSKVVCCTPEKIMKE 132
           DRCYKKVKKVLAKFPQ  R  +  E +G    KVVCCTPEKIMK+
Sbjct: 17  DRCYKKVKKVLAKFPQI-RDQVYNEKQGLVIIKVVCCTPEKIMKK 60

Query: 133 192
           
Sbjct: 77  60

Query: 193 208
           
Sbjct: 137 60

BLAST of WMU24853 vs. NCBI nr
Match: gi|700193833|gb|KGN49037.1| (hypothetical protein Csa_6G511040 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 73  DRCYKKVKKVLAKFPQN*RPAL**ENRGW*RSKVVCCTPEKIMKE 132
           DRCYKKVKKVLAKFPQ  R  +  E +G    KVVCCTPEKIMK+
Sbjct: 10  DRCYKKVKKVLAKFPQI-RDQVYNEKQGLVIIKVVCCTPEKIMKK 53

Query: 133 192
           
Sbjct: 70  53

Query: 193 208
           
Sbjct: 130 53

BLAST of WMU24853 vs. NCBI nr
Match: gi|659080790|ref|XP_008440982.1| (PREDICTED: protein PXR1-like [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1

Query: 76  RCYKKVKKVLAKFPQN*RPAL**ENRGW*RSKVVCCTPEKIMKE 135
           RCYKKVKKVLAKFPQ  R  +  E +G+   KVVCCTPEKIMK+
Sbjct: 18  RCYKKVKKVLAKFPQI-RDQVYNEKQGFVMIKVVCCTPEKIMKK 60

Query: 136 195
           
Sbjct: 78  60

Query: 196 208
           
Sbjct: 138 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|778720120|ref|XP_004134803.2|1.4e-0668.89PREDICTED: protein PXR1-like [Cucumis sativus][more]
gi|700193833|gb|KGN49037.1|1.4e-0668.89hypothetical protein Csa_6G511040 [Cucumis sativus][more]
gi|659080790|ref|XP_008440982.1|1.8e-0668.18PREDICTED: protein PXR1-like [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla014402Cla014402gene
Cla014408Cla014408gene
Cla014391Cla014391gene
Cla014413Cla014413gene
Cla014407Cla014407gene
Cla014404Cla014404gene
Cla014411Cla014411gene
Cla014399Cla014399gene
Cla014405Cla014405gene
Cla014401Cla014401gene
Cla014396Cla014396gene
Cla014412Cla014412gene
Cla014400Cla014400gene
Cla014414Cla014414gene
Cla014397Cla014397gene
Cla014398Cla014398gene
Cla014406Cla014406gene
Cla014410Cla014410gene
Cla014409Cla014409gene
Cla014389Cla014389gene
Cla014403Cla014403gene
Cla014393Cla014393gene
Cla014394Cla014394gene
Cla014395Cla014395gene
Cla014390Cla014390gene
Cla014392Cla014392gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0016667S3_0016667EST
S4_0165180S4_0165180EST