CmoCh07G003480 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G003480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Cmo_Chr07 : 1619794 .. 1620078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGCCTTTAAAATGGCTGCTTCATTCAACAAGTTACCTTCTCGGGAACCCGATCGAGGTCCCGATAAGCTCACAAGGGAAAAGGGGTTGTGAAGAAATATGCGATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGTTACAGCAAGGCCGATTACCAGAAGATGGAGGACTGGAAGGTGGATCTGCTTCTCAAGGAATATGGCTTGAGTTTTCATGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGGGCGTTTACATGGCCTGATCAGAATTAA

mRNA sequence

ATGGCCATGCCTTTAAAATGGCTGCTTCATTCAACAAGTTACCTTCTCGGGAACCCGATCGAGGTCCCGATAAGCTCACAAGGGAAAAGGGGTTGTGAAGAAATATGCGATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGTTACAGCAAGGCCGATTACCAGAAGATGGAGGACTGGAAGGTGGATCTGCTTCTCAAGGAATATGGCTTGAGTTTTCATGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGGGCGTTTACATGGCCTGATCAGAATTAA

Coding sequence (CDS)

ATGGCCATGCCTTTAAAATGGCTGCTTCATTCAACAAGTTACCTTCTCGGGAACCCGATCGAGGTCCCGATAAGCTCACAAGGGAAAAGGGGTTGTGAAGAAATATGCGATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGTTACAGCAAGGCCGATTACCAGAAGATGGAGGACTGGAAGGTGGATCTGCTTCTCAAGGAATATGGCTTGAGTTTTCATGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGGGCGTTTACATGGCCTGATCAGAATTAA

Homology

[Close]

BLAST of CmoCh07G003480 vs. TrEMBL
Match: A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-35
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 3  MPLKWLLHSTSYLLGNPIEVPI-----SSQGKRGCEEICDSGFQMPLHYPRYSKADYQKM 62
          M L+ LLHS SYLLGNP E        SS+GK+G EE+C+SGFQMPLHYPRY K+DYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 63 EDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQN 95
          E+WK+DLLLKEYGLSF GSLEEKRAFAMGAF WPDQN
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 97

[Close]

BLAST of CmoCh07G003480 vs. TrEMBL
Match: G7IPB3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026420 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-25
Identity = 61/107 (57.01%), Postives = 76/107 (71.03%), Query Frame = 1


Query: 1   MAMPLKWLLHSTSYLLGNPIEVPI----SSQGKRGC----EEICDSG------FQMPLHY 60
           MA+ ++WLLHS   +LG P E  I    + + K+ C    +E+ D        FQMPLHY
Sbjct: 1   MALIIRWLLHSACNILGYPREDKIEGYPNGEVKKKCLNNLKEVSDENSSSSYEFQMPLHY 60

Query: 61  PRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
           PRY+K DY+KME+WKV+LLLKEYGLSF GSL+EKR+FAMGAF WPDQ
Sbjct: 61  PRYTKVDYEKMEEWKVELLLKEYGLSFKGSLDEKRSFAMGAFLWPDQ 107

[Close]

BLAST of CmoCh07G003480 vs. TrEMBL
Match: A0A067GFM8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045350mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-24
Identity = 57/117 (48.72%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 3   MPLKWLLHSTSYLLGNPIEVPISSQGKRGCE--------------------------EIC 62
           M L+W+LH+  ++LG+  +  I   G  G +                          E C
Sbjct: 1   MALRWVLHTACHVLGHQNDNKIECNGVVGYQNDHHHQVQVNGVSSDSKVSDGLSQSVEAC 60

Query: 63  DSGFQMPLHYPRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
            SGFQ+PLHYPRYSKADY+KMEDWK+D+LL+EYGL F G+ +EKRAFAMGAF WPDQ
Sbjct: 61  ASGFQLPLHYPRYSKADYEKMEDWKLDMLLREYGLCFQGTPDEKRAFAMGAFLWPDQ 117

[Close]

BLAST of CmoCh07G003480 vs. TrEMBL
Match: B9HD46_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01870g PE=4 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 5   LKWLLHSTSYLLGNPIEVP-ISSQGKR-GC---------------EEICDSGFQMPLHYP 64
           L+WL+HS  ++LG P E   + S+ K  GC               E    +GFQMPLHYP
Sbjct: 4   LRWLVHSACHVLGYPNEDSNMQSRNKVVGCPNEHANGVMIKNSRLEMNPCTGFQMPLHYP 63

Query: 65  RYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
           RY+KADY+KME+WKVD+LL+EYG+SF G+LEEKRA+AMGAF WPDQ
Sbjct: 64  RYAKADYEKMEEWKVDMLLREYGISFKGNLEEKRAYAMGAFLWPDQ 109

[Close]

BLAST of CmoCh07G003480 vs. TrEMBL
Match: A0A0B2RLN7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009934 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-23
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 3   MPLKWLLHSTSYLLGNPIEVPISSQGKR--GCEEICD----------------------S 62
           M L+W+LHS  ++LG P       + K+  G   I +                      S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLANNFNEVDQCYPCS 60

Query: 63  GFQMPLHYPRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQN 95
           GFQMPLHYPRY+K DY+ ME+WKVDLLLK+YGLSF G+L+EKRAFAMGAF WPDQ+
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQD 116

[Close]

BLAST of CmoCh07G003480 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-19
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 38  SGFQMPLHYPRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
           SGFQ+PLHYP+YSK+DY+ M+D ++DLLLK+YG SF GSLE+KR FA+ +F WPDQ
Sbjct: 45  SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQ 100

[Close]

BLAST of CmoCh07G003480 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-18
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 7  WLLHSTSYLLGNPIEVPISSQGKRGCEEICDSGFQMPLHYPRYSKADYQKMEDWKVDLLL 66
          WLL+  ++      +  + +  K G  +   SGF+MPLHYPRY+K DY++ME+W++DLLL
Sbjct: 6  WLLNFLNHAKN---QESVENLDKNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLL 65

Query: 67 KEYG-LSFH-GSLEEKRAFAMGAFTWP 92
           EYG L+FH  +L EKRAFA+  F WP
Sbjct: 66 SEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of CmoCh07G003480 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-16
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 38 SGFQMPLHYPRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQN 95
          S FQ+PLHYP+Y+K+DY+KM +W++D LL+EYGL   G   EKR FA+GAF W  +N
Sbjct: 43 SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSEN 99

[Close]

BLAST of CmoCh07G003480 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-15
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 38 SGFQMPLHYPRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTW 91
          S F+MPLHYPRYSK DYQ M +WK+D +L +YGLS +G L  KR FA+GAF W
Sbjct: 30 SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]

BLAST of CmoCh07G003480 vs. TAIR10
Match: AT3G11405.1 (AT3G11405.1 unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 9.5e-09
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1


Query: 38  SGFQMPLHYPRYSKADYQKMEDWKVDLLLKEYGLSFH-GSLEEKRAFAMGAFTW 91
           S FQMPL YP Y+K  Y  M + ++D LLK YGL    G+L  K+ FA+GAF W
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

[Close]

BLAST of CmoCh07G003480 vs. NCBI nr
Match: gi|778720128|ref|XP_011658113.1| (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.3e-35
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 3  MPLKWLLHSTSYLLGNPIEVPI-----SSQGKRGCEEICDSGFQMPLHYPRYSKADYQKM 62
          M L+ LLHS SYLLGNP E        SS+GK+G EE+C+SGFQMPLHYPRY K+DYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 63 EDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQN 95
          E+WK+DLLLKEYGLSF GSLEEKRAFAMGAF WPDQN
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 97

[Close]

BLAST of CmoCh07G003480 vs. NCBI nr
Match: gi|357447993|ref|XP_003594272.1| (hypothetical protein MTR_2g026420 [Medicago truncatula])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 61/107 (57.01%), Postives = 76/107 (71.03%), Query Frame = 1


Query: 1   MAMPLKWLLHSTSYLLGNPIEVPI----SSQGKRGC----EEICDSG------FQMPLHY 60
           MA+ ++WLLHS   +LG P E  I    + + K+ C    +E+ D        FQMPLHY
Sbjct: 1   MALIIRWLLHSACNILGYPREDKIEGYPNGEVKKKCLNNLKEVSDENSSSSYEFQMPLHY 60

Query: 61  PRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
           PRY+K DY+KME+WKV+LLLKEYGLSF GSL+EKR+FAMGAF WPDQ
Sbjct: 61  PRYTKVDYEKMEEWKVELLLKEYGLSFKGSLDEKRSFAMGAFLWPDQ 107

[Close]

BLAST of CmoCh07G003480 vs. NCBI nr
Match: gi|641859833|gb|KDO78523.1| (hypothetical protein CISIN_1g045350mg [Citrus sinensis])

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-24
Identity = 57/117 (48.72%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 3   MPLKWLLHSTSYLLGNPIEVPISSQGKRGCE--------------------------EIC 62
           M L+W+LH+  ++LG+  +  I   G  G +                          E C
Sbjct: 1   MALRWVLHTACHVLGHQNDNKIECNGVVGYQNDHHHQVQVNGVSSDSKVSDGLSQSVEAC 60

Query: 63  DSGFQMPLHYPRYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
            SGFQ+PLHYPRYSKADY+KMEDWK+D+LL+EYGL F G+ +EKRAFAMGAF WPDQ
Sbjct: 61  ASGFQLPLHYPRYSKADYEKMEDWKLDMLLREYGLCFQGTPDEKRAFAMGAFLWPDQ 117

[Close]

BLAST of CmoCh07G003480 vs. NCBI nr
Match: gi|802681920|ref|XP_012082179.1| (PREDICTED: uncharacterized protein LOC105642099 [Jatropha curcas])

HSP 1 Score: 118.2 bits (295), Expect = 7.5e-24
Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = 1


Query: 3   MPLKWLLHSTSYLLGNPIEVPISSQGKRG-----CEEIC----------DSGFQMPLHYP 62
           M L+WLLHS   +LG P++     QG  G     CE+              GFQMPLHYP
Sbjct: 1   MALRWLLHSACQVLGYPLKDSTDMQGSHGVVGYPCEKDVYGVIKMETYPSGGFQMPLHYP 60

Query: 63  RYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
           +Y+K+DY+KME+W+VDLLL+EYGL+F G+LEEKR FA GAF WP Q
Sbjct: 61  KYTKSDYEKMEEWRVDLLLREYGLNFKGTLEEKREFATGAFLWPGQ 106

[Close]

BLAST of CmoCh07G003480 vs. NCBI nr
Match: gi|566173985|ref|XP_002307908.2| (hypothetical protein POPTR_0006s01870g [Populus trichocarpa])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 5   LKWLLHSTSYLLGNPIEVP-ISSQGKR-GC---------------EEICDSGFQMPLHYP 64
           L+WL+HS  ++LG P E   + S+ K  GC               E    +GFQMPLHYP
Sbjct: 4   LRWLVHSACHVLGYPNEDSNMQSRNKVVGCPNEHANGVMIKNSRLEMNPCTGFQMPLHYP 63

Query: 65  RYSKADYQKMEDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 94
           RY+KADY+KME+WKVD+LL+EYG+SF G+LEEKRA+AMGAF WPDQ
Sbjct: 64  RYAKADYEKMEEWKVDMLLREYGISFKGNLEEKRAYAMGAFLWPDQ 109

The following BLAST results are available for this feature:

BLAST of CmoCh07G003480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G003480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMW8_CUCSA	3.0e-35	75.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1	[more]
G7IPB3_MEDTR	1.6e-25	57.01	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026420 PE=4 SV=1	[more]
A0A067GFM8_CITSI	3.1e-24	48.72	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045350mg PE=4 SV=1	[more]
B9HD46_POPTR	1.2e-23	55.66	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01870g PE=4 SV=2	[more]
A0A0B2RLN7_GLYSO	5.8e-23	50.00	Uncharacterized protein OS=Glycine soja GN=glysoja_009934 PE=4 SV=1	[more]

BLAST of CmoCh07G003480 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55620.1	1.6e-19	67.86	unknown protein	[more]
AT3G09950.1	2.3e-18	48.28	unknown protein	[more]
AT5G41761.1	3.6e-16	57.89	unknown protein	[more]
AT3G55570.1	1.4e-15	64.15	unknown protein	[more]
AT3G11405.1	9.5e-09	51.85	unknown protein	[more]

BLAST of CmoCh07G003480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778720128\|ref\|XP_011658113.1\|	4.3e-35	75.26	PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus]	[more]
gi\|357447993\|ref\|XP_003594272.1\|	2.3e-25	57.01	hypothetical protein MTR_2g026420 [Medicago truncatula]	[more]
gi\|641859833\|gb\|KDO78523.1\|	4.4e-24	48.72	hypothetical protein CISIN_1g045350mg [Citrus sinensis]	[more]
gi\|802681920\|ref\|XP_012082179.1\|	7.5e-24	52.83	PREDICTED: uncharacterized protein LOC105642099 [Jatropha curcas]	[more]
gi\|566173985\|ref\|XP_002307908.2\|	1.7e-23	55.66	hypothetical protein POPTR_0006s01870g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G003480.1	CmoCh07G003480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 33..93 score: 5.0
None	No IPR available	PANTHER	PTHR33513:SF2	SUBFAMILY NOT NAMED	coord: 33..93 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G003480	Cucsa.044650	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G003480	CmaCh03G005860	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G003480	Cla014392	Watermelon (97103) v1	cmowmB816
CmoCh07G003480	Csa6G511080	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G003480	MELO3C007449	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G003480	ClCG01G021310	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G003480	CSPI06G32880	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G003480	Cp4.1LG10g09900	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G003480	Cp4.1LG19g08000	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G003480	CsaV3_6G048330	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G003480	Cla97C01G020890	Watermelon (97103) v2	cmowmbB849
CmoCh07G003480	Bhi03G000514	Wax gourd	cmowgoB1051

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G003480	CmoCh03G006110	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G003480	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G003480	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G003480	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G003480	Silver-seed gourd	carcmoB0554
CmoCh07G003480	Silver-seed gourd	carcmoB0888
CmoCh07G003480	Cucurbita maxima (Rimu)	cmacmoB428
CmoCh07G003480	Cucurbita maxima (Rimu)	cmacmoB875