Cp4.1LG10g09900 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g09900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGb|AAF04428.1
LocationCp4.1LG10 : 4256966 .. 4257265 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAGGATGGCTACTTTATTCAGCAGCTTGTCTTCTCGGGAACCCGAATCATGAGGTCCATGGCTACGGTGAAGAGAGGAGCTCAAAAGGGGAAAAGGGTTGTGAAGAAATATGCACTTCTTCTGGGTTTCAAATGCCTCTTCATTACCCTCACTACACCAAGGCAGATTACCAGAAGATGGAAGAGTGGAAGGTGGATCAGCTTCTCAAGGAATATGGCTTGAGCTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTCTATGGCCTGATCAGTATTAA

mRNA sequence

ATGGCTTTAGGATGGCTACTTTATTCAGCAGCTTGTCTTCTCGGGAACCCGAATCATGAGGTCCATGGCTACGGTGAAGAGAGGAGCTCAAAAGGGGAAAAGGGTTGTGAAGAAATATGCACTTCTTCTGGGTTTCAAATGCCTCTTCATTACCCTCACTACACCAAGGCAGATTACCAGAAGATGGAAGAGTGGAAGGTGGATCAGCTTCTCAAGGAATATGGCTTGAGCTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTCTATGGCCTGATCAGTATTAA

Coding sequence (CDS)

ATGGCTTTAGGATGGCTACTTTATTCAGCAGCTTGTCTTCTCGGGAACCCGAATCATGAGGTCCATGGCTACGGTGAAGAGAGGAGCTCAAAAGGGGAAAAGGGTTGTGAAGAAATATGCACTTCTTCTGGGTTTCAAATGCCTCTTCATTACCCTCACTACACCAAGGCAGATTACCAGAAGATGGAAGAGTGGAAGGTGGATCAGCTTCTCAAGGAATATGGCTTGAGCTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTCTATGGCCTGATCAGTATTAA

Protein sequence

MALGWLLYSAACLLGNPNHEVHGYGEERSSKGEKGCEEICTSSGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY
Homology
[Close]
BLAST of Cp4.1LG10g09900 vs. TrEMBL
Match: A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1 

Query: 1  MALGWLLYSAACLLGNPNHEVHGYGEERSSKGEKGCEEICTSSGFQMPLHYPHYTKADYQ 60
          M L  LL+S + LLGNPN E H YGEERSSKG+KG EE+C +SGFQMPLHYP Y K+DYQ
Sbjct: 1  MDLRGLLHSVSYLLGNPN-EAHAYGEERSSKGKKGYEELC-NSGFQMPLHYPRYKKSDYQ 60

Query: 61 KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
          KMEEWK+D LLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 KMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]
BLAST of Cp4.1LG10g09900 vs. TrEMBL
Match: A0A061GHA6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030413 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.1e-27
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 1 

Query: 1   MALGWLLYSAACLLG-----NPNH------------EVHGYGEERSSKGEKGCEEICTS- 60
           MAL W ++SA  +LG     +PNH            E H  G  RSSK   G E++ T  
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNG-EQVSTQT 60

Query: 61  -----SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPD 100
                SGFQMPLHYP YTKADY+KMEEWKVD LL+EYGLSF+G+L+EKRA+AMGAFLWPD
Sbjct: 61  AEMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPD 120

[Close]
BLAST of Cp4.1LG10g09900 vs. TrEMBL
Match: B9SA77_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0863040 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-26
Identity = 66/117 (56.41%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MALGWLLYSAACLLGNPNHE--------VHGYGEERSSKGEKGCE----------EICTS 60
           MAL WLL+SA  +LG PN+E        V GY  E+ + G               E   S
Sbjct: 1   MALRWLLHSACHVLGYPNNEASYRQGSHVLGYPNEQHANGVMKSGKPIAEMEVKMETYPS 60

Query: 61  SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
            GFQ+PLHYP YTK DYQKMEEW+VD LL+EYGLS +G+LEEKRAFAMG FLWPDQY
Sbjct: 61  GGFQLPLHYPRYTKTDYQKMEEWRVDMLLREYGLSIKGTLEEKRAFAMGTFLWPDQY 117

[Close]
BLAST of Cp4.1LG10g09900 vs. TrEMBL
Match: A0A059CA62_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03884 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-26
Identity = 61/115 (53.04%), Postives = 72/115 (62.61%), Query Frame = 1 

Query: 1   MALGWLLYSAACLLGNPNHEVHGYGEERS----------------SKGEKGCEEICTSSG 60
           MAL WLL+SA  +L  P+HE  G     S                 K     E +C S G
Sbjct: 1   MALSWLLHSACHVLRYPDHEARGMNHHPSLLSGVSPTRQDAVKSLKKTSDAKEAMCGSPG 60

Query: 61  FQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
           FQMPLHYP Y K DY+ MEEW++D LL+EYGLSF G+L+EKRA+AMGAFLWPDQY
Sbjct: 61  FQMPLHYPRYKKVDYENMEEWRLDMLLREYGLSFDGNLDEKRAYAMGAFLWPDQY 115

[Close]
BLAST of Cp4.1LG10g09900 vs. TrEMBL
Match: I1MFQ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117600 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-25
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 1   MALGWLLYSAACLLGNPNH--------EVHGYGEERSSKGEKGC---------EEICTSS 60
           MAL W+L+SA  +LG P          ++ GY     +K  KG          ++    S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLSNNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
           GFQMPLHYP YTK DY+ MEEWKVD LLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

[Close]
BLAST of Cp4.1LG10g09900 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 87.4 bits (215), Expect = 5.3e-18
Identity = 36/56 (64.29%), Postives = 49/56 (87.50%), Query Frame = 1 

Query: 43  SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
           SGFQ+PLHYP Y+K+DY+ M++ ++D LLK+YG SF+GSLE+KR FA+ +FLWPDQ
Sbjct: 45  SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQ 100

[Close]
BLAST of Cp4.1LG10g09900 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 7.6e-17
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 42 SSGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
          SS FQ+PLHYP YTK+DY+KM EW++D+LL+EYGL   G   EKR FA+GAFLW  +
Sbjct: 42 SSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]
BLAST of Cp4.1LG10g09900 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-16
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1 

Query: 4  GWLLYSAACLLGNPNHEVHGYGEERSSKGEKGCEEICTSSGFQMPLHYPHYTKADYQKME 63
          GWLL          N   H   +E     +K       SSGF+MPLHYP YTK DY++ME
Sbjct: 5  GWLL----------NFLNHAKNQESVENLDKNGAVKAPSSGFKMPLHYPRYTKEDYEEME 64

Query: 64 EWKVDQLLKEYGL--SFQGSLEEKRAFAMGAFLWP 97
          EW++D LL EYGL      +L EKRAFA+  F+WP
Sbjct: 65 EWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]
BLAST of Cp4.1LG10g09900 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.2e-15
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 43 SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLW 96
          S F+MPLHYP Y+K DYQ M EWK+D++L +YGLS  G L  KR FA+GAFLW
Sbjct: 30 SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]
BLAST of Cp4.1LG10g09900 vs. TAIR10
Match: AT3G11405.1 (AT3G11405.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 

Query: 43  SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQ-GSLEEKRAFAMGAFLW 96
           S FQMPL YP+Y K  Y  M E ++D+LLK YGL    G+L  K+ FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

[Close]
BLAST of Cp4.1LG10g09900 vs. NCBI nr
Match: gi|778720128|ref|XP_011658113.1| (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-35
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1 

Query: 1  MALGWLLYSAACLLGNPNHEVHGYGEERSSKGEKGCEEICTSSGFQMPLHYPHYTKADYQ 60
          M L  LL+S + LLGNPN E H YGEERSSKG+KG EE+C +SGFQMPLHYP Y K+DYQ
Sbjct: 1  MDLRGLLHSVSYLLGNPN-EAHAYGEERSSKGKKGYEELC-NSGFQMPLHYPRYKKSDYQ 60

Query: 61 KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
          KMEEWK+D LLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 KMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]
BLAST of Cp4.1LG10g09900 vs. NCBI nr
Match: gi|590627017|ref|XP_007026334.1| (Uncharacterized protein TCM_030413 [Theobroma cacao])

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-27
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 1 

Query: 1   MALGWLLYSAACLLG-----NPNH------------EVHGYGEERSSKGEKGCEEICTS- 60
           MAL W ++SA  +LG     +PNH            E H  G  RSSK   G E++ T  
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNG-EQVSTQT 60

Query: 61  -----SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPD 100
                SGFQMPLHYP YTKADY+KMEEWKVD LL+EYGLSF+G+L+EKRA+AMGAFLWPD
Sbjct: 61  AEMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPD 120

[Close]
BLAST of Cp4.1LG10g09900 vs. NCBI nr
Match: gi|1000957640|ref|XP_015577098.1| (PREDICTED: uncharacterized protein LOC8282528 [Ricinus communis])

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 66/117 (56.41%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MALGWLLYSAACLLGNPNHE--------VHGYGEERSSKGEKGCE----------EICTS 60
           MAL WLL+SA  +LG PN+E        V GY  E+ + G               E   S
Sbjct: 1   MALRWLLHSACHVLGYPNNEASYRQGSHVLGYPNEQHANGVMKSGKPIAEMEVKMETYPS 60

Query: 61  SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
            GFQ+PLHYP YTK DYQKMEEW+VD LL+EYGLS +G+LEEKRAFAMG FLWPDQY
Sbjct: 61  GGFQLPLHYPRYTKTDYQKMEEWRVDMLLREYGLSIKGTLEEKRAFAMGTFLWPDQY 117

[Close]
BLAST of Cp4.1LG10g09900 vs. NCBI nr
Match: gi|702351173|ref|XP_010057813.1| (PREDICTED: uncharacterized protein LOC104445607 [Eucalyptus grandis])

HSP 1 Score: 125.2 bits (313), Expect = 6.5e-26
Identity = 61/115 (53.04%), Postives = 72/115 (62.61%), Query Frame = 1 

Query: 1   MALGWLLYSAACLLGNPNHEVHGYGEERS----------------SKGEKGCEEICTSSG 60
           MAL WLL+SA  +L  P+HE  G     S                 K     E +C S G
Sbjct: 1   MALSWLLHSACHVLRYPDHEARGMNHHPSLLSGVSPTRQDAVKSLKKTSDAKEAMCGSPG 60

Query: 61  FQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
           FQMPLHYP Y K DY+ MEEW++D LL+EYGLSF G+L+EKRA+AMGAFLWPDQY
Sbjct: 61  FQMPLHYPRYKKVDYENMEEWRLDMLLREYGLSFDGNLDEKRAYAMGAFLWPDQY 115

[Close]
BLAST of Cp4.1LG10g09900 vs. NCBI nr
Match: gi|743920930|ref|XP_011004521.1| (PREDICTED: uncharacterized protein LOC105110995 [Populus euphratica])

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-25
Identity = 65/110 (59.09%), Postives = 76/110 (69.09%), Query Frame = 1 

Query: 2   ALGWLLYSAACLLGNPNHE--------VHGYGEERSS----KGEKGCEEICTSSGFQMPL 61
           AL WL++SA  +LG PN +        V G   E +S    K  +     CT  GFQMPL
Sbjct: 3   ALRWLVHSACHVLGYPNEDNNMQSRNKVVGCSNEHASGVMIKNSRLEMNPCT--GFQMPL 62

Query: 62  HYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
           HYP YTKADY+KMEEWKVD LL EYG+SF+G+LEEKRA+AMGAFLWPDQY
Sbjct: 63  HYPRYTKADYEKMEEWKVDMLLGEYGISFKGNLEEKRAYAMGAFLWPDQY 110

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g09900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g09900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMW8_CUCSA1.1e-3578.57Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1[more]
A0A061GHA6_THECC4.1e-2757.38Uncharacterized protein OS=Theobroma cacao GN=TCM_030413 PE=4 SV=1[more]
B9SA77_RICCO2.7e-2656.41Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0863040 PE=4 SV=1[more]
A0A059CA62_EUCGR4.5e-2653.04Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03884 PE=4 SV=1[more]
I1MFQ9_SOYBN5.0e-2553.91Uncharacterized protein OS=Glycine max GN=GLYMA_15G117600 PE=4 SV=1[more]
BLAST of Cp4.1LG10g09900 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G55620.15.3e-1864.29 unknown protein[more]
AT5G41761.17.6e-1763.16 unknown protein[more]
AT3G09950.11.0e-1646.32 unknown protein[more]
AT3G55570.14.2e-1564.15 unknown protein[more]
AT3G11405.11.2e-0955.56 unknown protein[more]
BLAST of Cp4.1LG10g09900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778720128|ref|XP_011658113.1|1.5e-3578.57PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus][more]
gi|590627017|ref|XP_007026334.1|5.9e-2757.38Uncharacterized protein TCM_030413 [Theobroma cacao][more]
gi|1000957640|ref|XP_015577098.1|3.8e-2656.41PREDICTED: uncharacterized protein LOC8282528 [Ricinus communis][more]
gi|702351173|ref|XP_010057813.1|6.5e-2653.04PREDICTED: uncharacterized protein LOC104445607 [Eucalyptus grandis][more]
gi|743920930|ref|XP_011004521.1|3.2e-2559.09PREDICTED: uncharacterized protein LOC105110995 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g09900.1Cp4.1LG10g09900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513FAMILY NOT NAMEDcoord: 42..99
score: 3.5
NoneNo IPR availablePANTHERPTHR33513:SF2SUBFAMILY NOT NAMEDcoord: 42..99
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g09900Cucsa.044650Cucumber (Gy14) v1cgycpeB0033
Cp4.1LG10g09900CmaCh07G003560Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g09900CmoCh03G006110Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g09900CmoCh07G003480Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g09900Cla014392Watermelon (97103) v1cpewmB073
Cp4.1LG10g09900Csa6G511080Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g09900MELO3C007449Melon (DHL92) v3.5.1cpemeB071
Cp4.1LG10g09900ClCG01G021310Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g09900CSPI06G32880Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g09900CsaV3_6G048330Cucumber (Chinese Long) v3cpecucB0092
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g09900Cp4.1LG19g08000Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g09900Cucurbita pepo (Zucchini)cpecpeB089
Cp4.1LG10g09900Cucurbita maxima (Rimu)cmacpeB218
Cp4.1LG10g09900Cucurbita maxima (Rimu)cmacpeB419
Cp4.1LG10g09900Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g09900Wild cucumber (PI 183967)cpecpiB051
Cp4.1LG10g09900Cucumber (Chinese Long) v2cpecuB056
Cp4.1LG10g09900Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g09900Cucumber (Gy14) v2cgybcpeB024
Cp4.1LG10g09900Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g09900Melon (DHL92) v3.6.1cpemedB091
Cp4.1LG10g09900Silver-seed gourdcarcpeB0554
Cp4.1LG10g09900Silver-seed gourdcarcpeB0913
Cp4.1LG10g09900Wax gourdcpewgoB0097